Wall clock time and date at job start Mon Mar 8 2021 06:54:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.43193 * 179.97438 * 2 1 4 4 C 1.39617 * 120.15021 * 187.46409 * 3 2 1 5 5 C 1.37968 * 119.85168 * 180.02562 * 4 3 2 6 6 C 1.38337 * 120.14629 * 359.73960 * 5 4 3 7 7 C 1.38389 * 120.30932 * 0.51915 * 6 5 4 8 8 C 1.50699 * 119.92615 * 179.76224 * 7 6 5 9 9 H 1.09003 * 112.84965 * 168.52615 * 8 7 6 10 10 C 1.53781 * 113.61310 * 299.72074 * 8 7 6 11 11 C 1.53779 * 87.07813 * 140.06758 * 10 8 7 12 12 H 1.08998 * 113.61414 * 219.93182 * 11 10 8 13 13 N 1.46497 * 113.61561 * 89.11705 * 11 10 8 14 14 C 1.39004 * 120.00202 * 154.99696 * 13 11 10 15 15 N 1.32394 * 119.71023 * 179.97438 * 14 13 11 16 16 C 1.31973 * 121.62797 * 180.02562 * 15 14 13 17 17 C 1.38019 * 120.85191 * 0.26010 * 16 15 14 18 18 C 1.50703 * 120.33199 * 179.72365 * 17 16 15 19 19 O 1.42894 * 109.47266 * 119.99566 * 18 17 16 20 20 Si 1.86298 * 109.47235 * 359.97438 * 18 17 16 21 21 C 1.38882 * 119.33362 * 359.49158 * 17 16 15 22 22 C 1.38303 * 118.50152 * 0.49484 * 21 17 16 23 23 C 1.53780 * 113.69022 * 37.25938 * 8 7 6 24 24 C 1.37926 * 120.14657 * 359.48521 * 7 6 5 25 25 H 1.08003 * 120.07539 * 0.04536 * 4 3 2 26 26 H 1.07994 * 119.92792 * 180.02562 * 5 4 3 27 27 H 1.08004 * 119.84753 * 180.25664 * 6 5 4 28 28 H 1.08995 * 113.61557 * 25.52092 * 10 8 7 29 29 H 1.09003 * 113.69017 * 254.62387 * 10 8 7 30 30 H 0.97001 * 120.00213 * 334.99946 * 13 11 10 31 31 H 1.08002 * 119.57103 * 179.97438 * 16 15 14 32 32 H 1.08997 * 109.46604 * 239.99254 * 18 17 16 33 33 H 0.96698 * 114.00137 * 300.00159 * 19 18 17 34 34 H 1.48498 * 110.00039 * 180.02562 * 20 18 17 35 35 H 1.48500 * 109.99961 * 301.31903 * 20 18 17 36 36 H 1.07994 * 120.75153 * 180.25022 * 21 17 16 37 37 H 1.08004 * 120.45124 * 179.77718 * 22 21 17 38 38 H 1.08998 * 113.61350 * 105.45750 * 23 8 7 39 39 H 1.09000 * 113.61460 * 334.55391 * 23 8 7 40 40 H 1.08001 * 120.07858 * 180.23549 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2687 1.1980 0.1568 5 6 4.6484 1.1916 0.1554 6 6 5.3374 0.0016 0.0044 7 6 4.6493 -1.1883 -0.1569 8 6 5.4087 -2.4789 -0.3260 9 1 4.7709 -3.3591 -0.2442 10 6 6.3271 -2.4962 -1.5594 11 6 7.3581 -3.2276 -0.6836 12 1 8.3839 -2.8990 -0.8502 13 7 7.2172 -4.6856 -0.7051 14 6 8.3131 -5.4940 -0.4262 15 7 8.1792 -6.8110 -0.4467 16 6 9.1939 -7.6139 -0.1873 17 6 10.4387 -7.1042 0.1219 18 6 11.5878 -8.0319 0.4221 19 8 12.6402 -7.8063 -0.5178 20 14 11.0094 -9.7983 0.2954 21 6 10.6229 -5.7279 0.1489 22 6 9.5410 -4.9118 -0.1273 23 6 6.6849 -2.5614 0.5280 24 6 3.2701 -1.1963 -0.1574 25 1 2.7319 2.1272 0.2793 26 1 5.1916 2.1170 0.2770 27 1 6.4174 0.0016 0.0081 28 1 6.6495 -1.5048 -1.8776 29 1 5.9449 -3.1012 -2.3816 30 1 6.3592 -5.0870 -0.9140 31 1 9.0472 -8.6836 -0.2130 32 1 11.9545 -7.8413 1.4308 33 1 12.3847 -7.9572 -1.4381 34 1 12.1333 -10.7231 0.5899 35 1 9.8937 -10.0368 1.2459 36 1 11.5881 -5.3045 0.3841 37 1 9.6479 -3.8372 -0.1115 38 1 6.5905 -3.2196 1.3916 39 1 7.1051 -1.5879 0.7803 40 1 2.7342 -2.1260 -0.2795 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_15356834_13915762.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:54:27 Heat of formation + Delta-G solvation = 103.800013 kcal Electronic energy + Delta-G solvation = -23121.076919 eV Core-core repulsion = 19675.622882 eV Total energy + Delta-G solvation = -3445.454038 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 308.127 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.64165 -40.97603 -39.48652 -37.86724 -37.47449 -35.30024 -33.38457 -32.25553 -32.21750 -30.82393 -26.78687 -26.62461 -25.73683 -24.92380 -24.57749 -22.93990 -22.48184 -20.55642 -19.25825 -18.54398 -18.38476 -17.34315 -17.27820 -16.69789 -16.49790 -16.11695 -16.05359 -15.82687 -15.35262 -15.26003 -15.12056 -14.71016 -14.51085 -14.28409 -14.18297 -14.01889 -13.96451 -13.78027 -13.38525 -13.28990 -13.04190 -12.72067 -12.49423 -12.31574 -12.11306 -11.79856 -11.69344 -11.17055 -11.00216 -10.70159 -10.37506 -10.34929 -9.91320 -9.66131 -8.64376 -4.98092 -0.19299 0.25985 0.37791 0.44371 1.36005 1.54189 1.64399 1.89811 1.98316 2.12048 2.81951 2.84740 2.87356 3.52892 3.58255 3.65192 3.71937 3.77805 3.82250 3.93991 4.03208 4.03725 4.13644 4.19822 4.20365 4.33585 4.41627 4.52537 4.54649 4.65843 4.79242 4.81535 4.87753 4.92749 5.03474 5.06033 5.09666 5.14320 5.25812 5.35691 5.38328 5.44286 5.58480 5.65676 5.90894 6.12065 6.37675 6.57971 6.82182 7.18721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.475 5.475 2 C 0.275 3.725 3 C -0.047 4.047 4 C -0.077 4.077 5 C -0.115 4.115 6 C -0.080 4.080 7 C -0.074 4.074 8 C -0.073 4.073 9 H 0.095 0.905 10 C -0.127 4.127 11 C 0.125 3.875 12 H 0.112 0.888 13 N -0.703 5.703 14 C 0.397 3.603 15 N -0.568 5.568 16 C 0.144 3.856 17 C -0.237 4.237 18 C -0.052 4.052 19 O -0.556 6.556 20 Si 0.763 3.237 21 C -0.013 4.013 22 C -0.239 4.239 23 C -0.144 4.144 24 C -0.073 4.073 25 H 0.140 0.860 26 H 0.158 0.842 27 H 0.158 0.842 28 H 0.116 0.884 29 H 0.075 0.925 30 H 0.405 0.595 31 H 0.164 0.836 32 H 0.107 0.893 33 H 0.394 0.606 34 H -0.297 1.297 35 H -0.289 1.289 36 H 0.146 0.854 37 H 0.155 0.845 38 H 0.062 0.938 39 H 0.115 0.885 40 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.241 3.244 -2.443 7.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.151 5.151 2 C -0.039 4.039 3 C -0.050 4.050 4 C -0.098 4.098 5 C -0.133 4.133 6 C -0.098 4.098 7 C -0.074 4.074 8 C -0.091 4.091 9 H 0.113 0.887 10 C -0.165 4.165 11 C 0.020 3.980 12 H 0.129 0.871 13 N -0.334 5.334 14 C 0.161 3.839 15 N -0.285 5.285 16 C -0.013 4.013 17 C -0.243 4.243 18 C -0.163 4.163 19 O -0.364 6.364 20 Si 0.670 3.330 21 C -0.039 4.039 22 C -0.263 4.263 23 C -0.182 4.182 24 C -0.094 4.094 25 H 0.157 0.843 26 H 0.176 0.824 27 H 0.175 0.825 28 H 0.134 0.866 29 H 0.093 0.907 30 H 0.242 0.758 31 H 0.181 0.819 32 H 0.125 0.875 33 H 0.244 0.756 34 H -0.225 1.225 35 H -0.216 1.216 36 H 0.163 0.837 37 H 0.173 0.827 38 H 0.080 0.920 39 H 0.133 0.867 40 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 3.901 2.482 -1.700 4.926 hybrid contribution 0.339 0.406 0.681 0.863 sum 4.241 2.888 -1.019 5.231 Atomic orbital electron populations 1.81316 1.13825 1.08949 1.10977 1.26221 0.93175 0.92308 0.92200 1.16110 0.82815 0.96411 1.09708 1.21428 0.95385 0.96409 0.96534 1.21420 0.92958 0.99851 0.99075 1.21621 1.01905 0.91103 0.95178 1.19712 0.92194 0.95851 0.99623 1.21575 0.95119 0.94514 0.97893 0.88676 1.23436 0.94820 1.02150 0.96106 1.22012 1.00900 0.78016 0.97115 0.87052 1.44292 1.09851 1.04312 1.74972 1.18628 0.87868 0.87672 0.89706 1.67124 1.34692 1.03974 1.22724 1.22413 0.87491 0.99090 0.92292 1.21032 0.96734 0.96162 1.10354 1.24792 0.88534 1.07875 0.95120 1.86449 1.36556 1.92655 1.20707 0.93881 0.76712 0.73269 0.89148 1.21402 0.98911 0.92307 0.91251 1.21722 0.92176 1.02263 1.10148 1.23685 0.95193 1.02337 0.97027 1.21195 0.94457 0.96513 0.97240 0.84256 0.82402 0.82484 0.86613 0.90673 0.75843 0.81914 0.87544 0.75602 1.22526 1.21573 0.83653 0.82709 0.91966 0.86699 0.84988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -5.70 18.54 19.00 0.35 -5.35 16 2 C 0.28 1.53 15.33 88.33 1.35 2.88 16 3 C -0.05 0.05 5.73 -21.36 -0.12 -0.07 16 4 C -0.08 0.37 9.76 22.54 0.22 0.59 16 5 C -0.12 1.01 10.03 22.23 0.22 1.24 16 6 C -0.08 0.78 8.62 22.33 0.19 0.97 16 7 C -0.07 0.53 5.28 -19.90 -0.11 0.42 16 8 C -0.07 0.65 3.85 -11.01 -0.04 0.60 16 9 H 0.09 -0.73 8.09 -2.39 -0.02 -0.75 16 10 C -0.13 1.33 7.29 31.12 0.23 1.56 16 11 C 0.13 -1.13 4.11 45.52 0.19 -0.94 16 12 H 0.11 -1.22 6.10 -2.39 -0.01 -1.24 16 13 N -0.70 2.58 5.43 -322.05 -1.75 0.83 16 14 C 0.40 0.41 7.65 133.07 1.02 1.42 16 15 N -0.57 -2.50 10.39 -193.26 -2.01 -4.51 16 16 C 0.14 0.23 9.84 84.62 0.83 1.07 16 17 C -0.24 0.00 5.40 -19.76 -0.11 -0.11 16 18 C -0.05 0.06 2.84 71.24 0.20 0.26 16 19 O -0.56 0.50 12.78 -148.98 -1.90 -1.40 16 20 Si 0.76 -1.47 29.82 68.60 2.05 0.58 16 21 C -0.01 0.01 9.76 22.44 0.22 0.23 16 22 C -0.24 0.39 9.29 22.50 0.21 0.60 16 23 C -0.14 1.37 7.25 31.12 0.23 1.60 16 24 C -0.07 0.26 9.41 22.54 0.21 0.47 16 25 H 0.14 -0.93 8.06 -2.91 -0.02 -0.96 16 26 H 0.16 -2.11 8.06 -2.91 -0.02 -2.13 16 27 H 0.16 -2.36 6.63 -2.91 -0.02 -2.38 16 28 H 0.12 -1.51 7.73 -2.39 -0.02 -1.53 16 29 H 0.07 -0.66 8.14 -2.39 -0.02 -0.68 16 30 H 0.41 -1.45 8.82 -92.71 -0.82 -2.27 16 31 H 0.16 -0.32 4.88 -2.91 -0.01 -0.33 16 32 H 0.11 -0.03 7.96 -2.39 -0.02 -0.05 16 33 H 0.39 -3.35 8.70 -74.06 -0.64 -3.99 16 34 H -0.30 -1.60 7.11 99.48 0.71 -0.90 16 35 H -0.29 -0.96 7.11 99.48 0.71 -0.26 16 36 H 0.15 -0.47 8.06 -2.91 -0.02 -0.49 16 37 H 0.16 -1.03 6.03 -2.91 -0.02 -1.04 16 38 H 0.06 -0.34 8.14 -2.39 -0.02 -0.36 16 39 H 0.11 -1.50 6.30 -2.39 -0.02 -1.51 16 40 H 0.13 -0.59 8.05 -2.91 -0.02 -0.61 16 Total: 0.00 -19.89 342.38 1.36 -18.53 By element: Atomic # 1 Polarization: -21.16 SS G_CDS: -0.32 Total: -21.48 kcal Atomic # 6 Polarization: 7.86 SS G_CDS: 4.95 Total: 12.80 kcal Atomic # 7 Polarization: -5.62 SS G_CDS: -3.41 Total: -9.03 kcal Atomic # 8 Polarization: 0.50 SS G_CDS: -1.90 Total: -1.40 kcal Atomic # 14 Polarization: -1.47 SS G_CDS: 2.05 Total: 0.58 kcal Total: -19.89 1.36 -18.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_15356834_13915762.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.328 kcal (2) G-P(sol) polarization free energy of solvation -19.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.528 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds