Wall clock time and date at job start Mon Mar 8 2021 06:54:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.43203 * 179.97438 * 2 1 4 4 C 1.39615 * 120.14551 * 187.74592 * 3 2 1 5 5 C 1.37973 * 119.83985 * 180.02562 * 4 3 2 6 6 C 1.38333 * 120.15651 * 0.02562 * 5 4 3 7 7 C 1.38386 * 120.30437 * 359.95724 * 6 5 4 8 8 C 1.50696 * 119.92797 * 180.02562 * 7 6 5 9 9 H 1.08997 * 112.85561 * 189.69090 * 8 7 6 10 10 C 1.53788 * 113.61322 * 320.89019 * 8 7 6 11 11 C 1.53948 * 87.02319 * 139.94911 * 10 8 7 12 12 H 1.08998 * 113.66821 * 220.06382 * 11 10 8 13 13 N 1.46502 * 113.61470 * 89.19762 * 11 10 8 14 14 C 1.38611 * 120.00222 * 107.46815 * 13 11 10 15 15 N 1.29685 * 124.94502 * 0.02562 * 14 13 11 16 16 C 1.32122 * 116.86737 * 179.97438 * 15 14 13 17 17 C 1.33335 * 114.57295 * 0.02562 * 16 15 14 18 18 C 1.50706 * 125.94699 * 180.02562 * 17 16 15 19 19 O 1.42898 * 109.47183 * 300.00288 * 18 17 16 20 20 Si 1.86296 * 109.46780 * 179.97438 * 18 17 16 21 21 S 1.70959 * 124.95189 * 179.72249 * 14 13 11 22 22 C 1.53785 * 113.61129 * 58.49018 * 8 7 6 23 23 C 1.37924 * 120.15173 * 0.04550 * 7 6 5 24 24 H 1.07998 * 120.08035 * 359.74325 * 4 3 2 25 25 H 1.08000 * 119.91927 * 180.02562 * 5 4 3 26 26 H 1.07999 * 119.84897 * 180.02562 * 6 5 4 27 27 H 1.09008 * 113.60844 * 254.53203 * 10 8 7 28 28 H 1.09002 * 113.61531 * 25.42519 * 10 8 7 29 29 H 0.97003 * 119.99915 * 287.46974 * 13 11 10 30 30 H 1.07992 * 122.71468 * 180.02562 * 16 15 14 31 31 H 1.08997 * 109.46857 * 60.00156 * 18 17 16 32 32 H 0.96711 * 113.99598 * 299.99832 * 19 18 17 33 33 H 1.48508 * 109.99745 * 179.97438 * 20 18 17 34 34 H 1.48498 * 110.00153 * 301.31932 * 20 18 17 35 35 H 1.08989 * 113.61753 * 334.56860 * 22 8 7 36 36 H 1.09003 * 113.61251 * 105.39312 * 22 8 7 37 37 H 1.08003 * 120.08115 * 180.02562 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2686 1.1973 0.1627 5 6 4.6483 1.1907 0.1612 6 6 5.3374 0.0023 -0.0016 7 6 4.6493 -1.1875 -0.1630 8 6 5.4085 -2.4772 -0.3391 9 1 4.7664 -3.3111 -0.6227 10 6 6.6627 -2.3387 -1.2182 11 6 7.3646 -3.2834 -0.2258 12 1 8.3945 -3.0015 -0.0071 13 7 7.2229 -4.7015 -0.5653 14 6 8.3079 -5.4072 -1.0616 15 7 9.4886 -4.9097 -1.2624 16 6 10.4079 -5.7287 -1.7417 17 6 9.9836 -6.9744 -1.9556 18 6 10.8132 -8.1115 -2.4941 19 8 11.3025 -7.7707 -3.7928 20 14 9.7635 -9.6463 -2.6082 21 16 8.2865 -7.0618 -1.4912 22 6 6.3558 -2.7987 0.8289 23 6 3.2700 -1.1955 -0.1635 24 1 2.7319 2.1264 0.2849 25 1 5.1916 2.1155 0.2874 26 1 6.4174 0.0028 -0.0016 27 1 6.5451 -2.7611 -2.2162 28 1 7.0783 -1.3311 -1.2303 29 1 6.3698 -5.1467 -0.4428 30 1 11.4212 -5.4145 -1.9438 31 1 11.6543 -8.2958 -1.8258 32 1 10.6071 -7.5929 -4.4409 33 1 10.5700 -10.7749 -3.1386 34 1 9.2231 -9.9928 -1.2692 35 1 6.6874 -1.9173 1.3775 36 1 5.9904 -3.5912 1.4821 37 1 2.7341 -2.1247 -0.2892 There are 53 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 53 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_15356834_15704118.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:54:32 Heat of formation + Delta-G solvation = 105.856711 kcal Electronic energy + Delta-G solvation = -21694.379687 eV Core-core repulsion = 18338.167081 eV Total energy + Delta-G solvation = -3356.212606 eV No. of doubly occupied orbitals = 53 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 314.083 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.61865 -40.63697 -39.58015 -37.87414 -37.35048 -35.35234 -32.42147 -32.32373 -31.05165 -27.04400 -26.85962 -26.22799 -25.10823 -24.37983 -23.07318 -21.63560 -20.46290 -19.63047 -19.10780 -18.06486 -17.53221 -17.08021 -16.96252 -16.50645 -16.35618 -15.91018 -15.81181 -15.48316 -15.12863 -15.10007 -14.91553 -14.61403 -14.18161 -14.12610 -13.99555 -13.73111 -13.68086 -13.20521 -13.03548 -12.82306 -12.70100 -12.36074 -12.07627 -12.04754 -11.95249 -11.44640 -11.14121 -10.78370 -10.27859 -10.16850 -10.09402 -9.86995 -8.78718 -5.14711 -0.32623 -0.05767 -0.00618 0.15214 0.66732 1.24669 1.56987 1.68029 1.88888 1.89580 2.01233 2.03768 2.74738 2.81344 3.25108 3.41463 3.46361 3.51671 3.65459 3.67968 3.77069 3.90638 3.91633 3.97765 4.08332 4.30319 4.46070 4.48006 4.54142 4.57834 4.63847 4.73231 4.76123 4.82239 4.87257 4.92228 5.15151 5.16919 5.21141 5.38824 5.65992 5.81548 5.99490 6.48848 6.51117 6.97811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.412 5.412 2 C 0.250 3.750 3 C -0.025 4.025 4 C -0.074 4.074 5 C -0.115 4.115 6 C -0.087 4.087 7 C -0.072 4.072 8 C -0.075 4.075 9 H 0.100 0.900 10 C -0.144 4.144 11 C 0.136 3.864 12 H 0.108 0.892 13 N -0.676 5.676 14 C 0.327 3.673 15 N -0.548 5.548 16 C 0.119 3.881 17 C -0.306 4.306 18 C -0.010 4.010 19 O -0.537 6.537 20 Si 0.655 3.345 21 S 0.089 5.911 22 C -0.137 4.137 23 C -0.067 4.067 24 H 0.133 0.867 25 H 0.135 0.865 26 H 0.132 0.868 27 H 0.076 0.924 28 H 0.097 0.903 29 H 0.414 0.586 30 H 0.176 0.824 31 H 0.122 0.878 32 H 0.380 0.620 33 H -0.236 1.236 34 H -0.241 1.241 35 H 0.102 0.898 36 H 0.078 0.922 37 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.658 0.223 -0.292 1.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.087 5.087 2 C -0.066 4.066 3 C -0.028 4.028 4 C -0.094 4.094 5 C -0.133 4.133 6 C -0.105 4.105 7 C -0.072 4.072 8 C -0.094 4.094 9 H 0.118 0.882 10 C -0.183 4.183 11 C 0.028 3.972 12 H 0.126 0.874 13 N -0.315 5.315 14 C -0.043 4.043 15 N -0.273 5.273 16 C -0.032 4.032 17 C -0.429 4.429 18 C -0.124 4.124 19 O -0.342 6.342 20 Si 0.555 3.445 21 S 0.338 5.662 22 C -0.176 4.176 23 C -0.088 4.088 24 H 0.151 0.849 25 H 0.153 0.847 26 H 0.150 0.850 27 H 0.095 0.905 28 H 0.115 0.885 29 H 0.252 0.748 30 H 0.193 0.807 31 H 0.139 0.861 32 H 0.228 0.772 33 H -0.159 1.159 34 H -0.165 1.165 35 H 0.120 0.880 36 H 0.097 0.903 37 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -0.284 -0.772 0.452 0.939 hybrid contribution 1.130 0.599 0.208 1.296 sum 0.846 -0.174 0.660 1.087 Atomic orbital electron populations 1.81310 1.12067 1.06937 1.08365 1.25744 0.92703 0.94110 0.94017 1.15989 0.84301 0.95226 1.07315 1.21245 0.94536 0.96743 0.96897 1.21133 0.93572 0.98736 0.99875 1.21297 1.00655 0.91752 0.96819 1.19590 0.92720 0.95044 0.99826 1.21642 0.95177 0.94836 0.97722 0.88220 1.23651 0.94967 1.00751 0.98926 1.21923 1.00774 0.79249 0.95263 0.87363 1.43694 1.09131 1.09479 1.69153 1.23696 0.91100 0.92938 0.96576 1.66477 0.99334 1.36789 1.24712 1.21332 0.99162 0.87845 0.94840 1.25595 0.96213 1.01566 1.19524 1.24109 1.00877 1.01180 0.86277 1.86516 1.36774 1.92013 1.18906 0.94986 0.85408 0.78037 0.86083 1.84009 1.10302 1.07480 1.64402 1.23487 0.95578 1.02311 0.96179 1.21082 0.93665 0.96776 0.97272 0.84903 0.84671 0.85003 0.90481 0.88451 0.74803 0.80675 0.86134 0.77249 1.15893 1.16507 0.88011 0.90316 0.85048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -1.95 18.54 41.84 0.78 -1.18 16 2 C 0.25 0.46 15.33 -22.47 -0.34 0.11 16 3 C -0.02 0.02 5.73 -106.93 -0.61 -0.59 16 4 C -0.07 0.15 9.76 -39.16 -0.38 -0.23 16 5 C -0.12 0.37 10.03 -39.64 -0.40 -0.03 16 6 C -0.09 0.29 8.53 -39.49 -0.34 -0.04 16 7 C -0.07 0.22 5.28 -104.68 -0.55 -0.34 16 8 C -0.08 0.31 3.85 -90.96 -0.35 -0.04 16 9 H 0.10 -0.47 8.08 -51.93 -0.42 -0.89 16 10 C -0.14 0.49 7.27 -25.83 -0.19 0.30 16 11 C 0.14 -0.38 4.44 -67.02 -0.30 -0.67 16 12 H 0.11 -0.12 7.66 -51.93 -0.40 -0.52 16 13 N -0.68 1.51 5.42 -54.90 -0.30 1.21 16 14 C 0.33 0.06 8.09 -87.68 -0.71 -0.65 16 15 N -0.55 -1.06 9.83 -15.21 -0.15 -1.21 16 16 C 0.12 0.14 11.22 -19.14 -0.21 -0.07 16 17 C -0.31 -0.04 5.74 -36.02 -0.21 -0.25 16 18 C -0.01 0.01 2.98 36.01 0.11 0.11 16 19 O -0.54 0.10 12.87 -35.23 -0.45 -0.35 16 20 Si 0.65 -0.67 31.05 -169.99 -5.28 -5.95 16 21 S 0.09 -0.07 20.57 -107.50 -2.21 -2.28 16 22 C -0.14 0.57 7.29 -25.91 -0.19 0.38 16 23 C -0.07 0.14 9.41 -39.17 -0.37 -0.23 16 24 H 0.13 -0.42 8.06 -52.49 -0.42 -0.84 16 25 H 0.14 -0.66 8.06 -52.49 -0.42 -1.09 16 26 H 0.13 -0.66 6.71 -52.49 -0.35 -1.01 16 27 H 0.08 -0.17 8.14 -51.92 -0.42 -0.59 16 28 H 0.10 -0.38 6.39 -51.93 -0.33 -0.71 16 29 H 0.41 -1.75 8.83 -40.82 -0.36 -2.11 16 30 H 0.18 0.03 8.06 -52.49 -0.42 -0.39 16 31 H 0.12 -0.05 7.96 -51.93 -0.41 -0.46 16 32 H 0.38 -1.44 8.70 45.56 0.40 -1.04 16 33 H -0.24 -0.40 7.11 56.52 0.40 0.00 16 34 H -0.24 -0.29 7.11 56.52 0.40 0.12 16 35 H 0.10 -0.46 7.63 -51.94 -0.40 -0.85 16 36 H 0.08 -0.33 8.14 -51.93 -0.42 -0.75 16 37 H 0.13 -0.41 8.05 -52.48 -0.42 -0.83 16 LS Contribution 337.93 15.07 5.09 5.09 Total: 0.00 -7.30 337.93 -11.58 -18.88 By element: Atomic # 1 Polarization: -7.96 SS G_CDS: -4.01 Total: -11.97 kcal Atomic # 6 Polarization: 2.80 SS G_CDS: -5.04 Total: -2.25 kcal Atomic # 7 Polarization: -1.51 SS G_CDS: 0.33 Total: -1.18 kcal Atomic # 8 Polarization: 0.10 SS G_CDS: -0.45 Total: -0.35 kcal Atomic # 14 Polarization: -0.67 SS G_CDS: -5.28 Total: -5.95 kcal Atomic # 16 Polarization: -0.07 SS G_CDS: -2.21 Total: -2.28 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -7.30 -11.58 -18.88 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_15356834_15704118.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.734 kcal (2) G-P(sol) polarization free energy of solvation -7.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.878 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds