Wall clock time and date at job start Mon Mar 8 2021 06:54:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.43203 * 179.97438 * 2 1 4 4 C 1.39615 * 120.14551 * 187.74592 * 3 2 1 5 5 C 1.37973 * 119.83985 * 180.02562 * 4 3 2 6 6 C 1.38333 * 120.15651 * 0.02562 * 5 4 3 7 7 C 1.38386 * 120.30437 * 359.95724 * 6 5 4 8 8 C 1.50696 * 119.92797 * 180.02562 * 7 6 5 9 9 H 1.08997 * 112.85561 * 189.69090 * 8 7 6 10 10 C 1.53788 * 113.61322 * 320.89019 * 8 7 6 11 11 C 1.53948 * 87.02319 * 139.94911 * 10 8 7 12 12 H 1.08998 * 113.66821 * 220.06382 * 11 10 8 13 13 N 1.46502 * 113.61470 * 89.19762 * 11 10 8 14 14 C 1.38611 * 120.00222 * 107.46815 * 13 11 10 15 15 N 1.29685 * 124.94502 * 0.02562 * 14 13 11 16 16 C 1.32122 * 116.86737 * 179.97438 * 15 14 13 17 17 C 1.33335 * 114.57295 * 0.02562 * 16 15 14 18 18 C 1.50706 * 125.94699 * 180.02562 * 17 16 15 19 19 O 1.42898 * 109.47183 * 300.00288 * 18 17 16 20 20 Si 1.86296 * 109.46780 * 179.97438 * 18 17 16 21 21 S 1.70959 * 124.95189 * 179.72249 * 14 13 11 22 22 C 1.53785 * 113.61129 * 58.49018 * 8 7 6 23 23 C 1.37924 * 120.15173 * 0.04550 * 7 6 5 24 24 H 1.07998 * 120.08035 * 359.74325 * 4 3 2 25 25 H 1.08000 * 119.91927 * 180.02562 * 5 4 3 26 26 H 1.07999 * 119.84897 * 180.02562 * 6 5 4 27 27 H 1.09008 * 113.60844 * 254.53203 * 10 8 7 28 28 H 1.09002 * 113.61531 * 25.42519 * 10 8 7 29 29 H 0.97003 * 119.99915 * 287.46974 * 13 11 10 30 30 H 1.07992 * 122.71468 * 180.02562 * 16 15 14 31 31 H 1.08997 * 109.46857 * 60.00156 * 18 17 16 32 32 H 0.96711 * 113.99598 * 299.99832 * 19 18 17 33 33 H 1.48508 * 109.99745 * 179.97438 * 20 18 17 34 34 H 1.48498 * 110.00153 * 301.31932 * 20 18 17 35 35 H 1.08989 * 113.61753 * 334.56860 * 22 8 7 36 36 H 1.09003 * 113.61251 * 105.39312 * 22 8 7 37 37 H 1.08003 * 120.08115 * 180.02562 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2686 1.1973 0.1627 5 6 4.6483 1.1907 0.1612 6 6 5.3374 0.0023 -0.0016 7 6 4.6493 -1.1875 -0.1630 8 6 5.4085 -2.4772 -0.3391 9 1 4.7664 -3.3111 -0.6227 10 6 6.6627 -2.3387 -1.2182 11 6 7.3646 -3.2834 -0.2258 12 1 8.3945 -3.0015 -0.0071 13 7 7.2229 -4.7015 -0.5653 14 6 8.3079 -5.4072 -1.0616 15 7 9.4886 -4.9097 -1.2624 16 6 10.4079 -5.7287 -1.7417 17 6 9.9836 -6.9744 -1.9556 18 6 10.8132 -8.1115 -2.4941 19 8 11.3025 -7.7707 -3.7928 20 14 9.7635 -9.6463 -2.6082 21 16 8.2865 -7.0618 -1.4912 22 6 6.3558 -2.7987 0.8289 23 6 3.2700 -1.1955 -0.1635 24 1 2.7319 2.1264 0.2849 25 1 5.1916 2.1155 0.2874 26 1 6.4174 0.0028 -0.0016 27 1 6.5451 -2.7611 -2.2162 28 1 7.0783 -1.3311 -1.2303 29 1 6.3698 -5.1467 -0.4428 30 1 11.4212 -5.4145 -1.9438 31 1 11.6543 -8.2958 -1.8258 32 1 10.6071 -7.5929 -4.4409 33 1 10.5700 -10.7749 -3.1386 34 1 9.2231 -9.9928 -1.2692 35 1 6.6874 -1.9173 1.3775 36 1 5.9904 -3.5912 1.4821 37 1 2.7341 -2.1247 -0.2892 There are 53 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 53 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_15356834_15704118.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:54:31 Heat of formation + Delta-G solvation = 110.370833 kcal Electronic energy + Delta-G solvation = -21694.183940 eV Core-core repulsion = 18338.167081 eV Total energy + Delta-G solvation = -3356.016859 eV No. of doubly occupied orbitals = 53 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 314.083 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.40385 -40.58007 -39.42569 -37.84149 -37.46947 -35.22193 -32.23030 -32.15778 -30.99628 -26.91589 -26.58648 -26.08735 -24.98334 -24.30273 -22.85997 -21.51528 -20.36696 -19.54212 -18.94379 -18.00047 -17.32757 -16.96711 -16.74534 -16.46070 -16.21211 -15.82288 -15.70343 -15.39183 -15.15371 -14.98427 -14.85119 -14.46525 -14.16447 -14.05135 -13.99100 -13.78916 -13.40392 -13.04763 -12.91533 -12.69162 -12.49152 -12.44062 -12.01101 -11.84116 -11.69962 -11.19872 -11.00432 -10.75208 -10.26209 -10.13736 -9.90406 -9.65599 -8.70246 -5.09825 -0.18300 -0.03354 0.04338 0.38707 0.69007 1.28538 1.56364 1.58757 1.89864 1.91279 2.00143 2.19521 2.83221 2.86565 3.49942 3.54625 3.66632 3.77004 3.80653 3.95283 3.95839 4.04646 4.20663 4.23206 4.34009 4.50171 4.53765 4.69215 4.74635 4.80782 4.86690 4.88864 5.02353 5.06901 5.12023 5.15490 5.32639 5.36201 5.44986 5.63704 5.90843 5.94067 6.20139 6.39761 6.74378 7.04087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.474 5.474 2 C 0.276 3.724 3 C -0.046 4.046 4 C -0.077 4.077 5 C -0.117 4.117 6 C -0.082 4.082 7 C -0.074 4.074 8 C -0.068 4.068 9 H 0.108 0.892 10 C -0.139 4.139 11 C 0.131 3.869 12 H 0.092 0.908 13 N -0.667 5.667 14 C 0.319 3.681 15 N -0.575 5.575 16 C 0.105 3.895 17 C -0.310 4.310 18 C -0.012 4.012 19 O -0.550 6.550 20 Si 0.728 3.272 21 S 0.111 5.889 22 C -0.127 4.127 23 C -0.069 4.069 24 H 0.139 0.861 25 H 0.155 0.845 26 H 0.151 0.849 27 H 0.066 0.934 28 H 0.104 0.896 29 H 0.424 0.576 30 H 0.177 0.823 31 H 0.118 0.882 32 H 0.395 0.605 33 H -0.273 1.273 34 H -0.268 1.268 35 H 0.109 0.891 36 H 0.082 0.918 37 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.120 0.472 -0.191 2.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.150 5.150 2 C -0.038 4.038 3 C -0.050 4.050 4 C -0.097 4.097 5 C -0.135 4.135 6 C -0.101 4.101 7 C -0.074 4.074 8 C -0.086 4.086 9 H 0.126 0.874 10 C -0.178 4.178 11 C 0.024 3.976 12 H 0.110 0.890 13 N -0.307 5.307 14 C -0.051 4.051 15 N -0.301 5.301 16 C -0.046 4.046 17 C -0.433 4.433 18 C -0.126 4.126 19 O -0.358 6.358 20 Si 0.632 3.368 21 S 0.361 5.639 22 C -0.166 4.166 23 C -0.090 4.090 24 H 0.157 0.843 25 H 0.173 0.827 26 H 0.168 0.832 27 H 0.084 0.916 28 H 0.123 0.877 29 H 0.264 0.736 30 H 0.194 0.806 31 H 0.135 0.865 32 H 0.245 0.755 33 H -0.199 1.199 34 H -0.194 1.194 35 H 0.127 0.873 36 H 0.101 0.899 37 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 0.150 -0.501 0.545 0.756 hybrid contribution 1.085 0.522 0.182 1.218 sum 1.235 0.021 0.727 1.433 Atomic orbital electron populations 1.81317 1.13802 1.08929 1.10950 1.26181 0.93114 0.92323 0.92198 1.16107 0.82852 0.96414 1.09611 1.21414 0.95222 0.96553 0.96521 1.21388 0.93084 0.99743 0.99247 1.21590 1.01680 0.91451 0.95338 1.19696 0.92315 0.95698 0.99683 1.21613 0.94874 0.94665 0.97455 0.87402 1.23627 0.95182 1.00821 0.98218 1.21947 1.00320 0.79026 0.96348 0.89008 1.43784 1.08959 1.09711 1.68245 1.23914 0.91238 0.93566 0.96416 1.66474 1.00107 1.37622 1.25913 1.21436 0.99404 0.88329 0.95427 1.25679 0.96890 1.01379 1.19342 1.24193 1.00851 1.01276 0.86288 1.86480 1.38013 1.92028 1.19295 0.94125 0.83603 0.75588 0.83494 1.83863 1.09342 1.06656 1.64065 1.23451 0.94668 1.02579 0.95867 1.21209 0.94194 0.96639 0.96910 0.84275 0.82708 0.83174 0.91551 0.87745 0.73629 0.80573 0.86491 0.75498 1.19917 1.19422 0.87298 0.89922 0.84355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -5.29 18.54 19.00 0.35 -4.93 16 2 C 0.28 1.30 15.33 88.33 1.35 2.65 16 3 C -0.05 0.08 5.73 -21.36 -0.12 -0.04 16 4 C -0.08 0.36 9.76 22.54 0.22 0.58 16 5 C -0.12 0.92 10.03 22.23 0.22 1.15 16 6 C -0.08 0.71 8.53 22.33 0.19 0.90 16 7 C -0.07 0.54 5.28 -19.90 -0.11 0.44 16 8 C -0.07 0.65 3.85 -11.01 -0.04 0.61 16 9 H 0.11 -1.18 8.08 -2.39 -0.02 -1.20 16 10 C -0.14 1.08 7.27 31.18 0.23 1.31 16 11 C 0.13 -0.81 4.44 45.58 0.20 -0.61 16 12 H 0.09 -0.21 7.66 -2.39 -0.02 -0.22 16 13 N -0.67 3.34 5.42 -327.62 -1.78 1.56 16 14 C 0.32 0.08 8.09 179.32 1.45 1.53 16 15 N -0.58 -2.47 9.83 -202.03 -1.99 -4.46 16 16 C 0.10 0.31 11.22 83.54 0.94 1.25 16 17 C -0.31 -0.13 5.74 24.58 0.14 0.01 16 18 C -0.01 0.01 2.98 71.24 0.21 0.22 16 19 O -0.55 0.22 12.87 -148.98 -1.92 -1.69 16 20 Si 0.73 -1.39 31.05 68.60 2.13 0.75 16 21 S 0.11 -0.20 20.57 -56.49 -1.16 -1.37 16 22 C -0.13 1.24 7.29 31.12 0.23 1.47 16 23 C -0.07 0.32 9.41 22.54 0.21 0.54 16 24 H 0.14 -0.91 8.06 -2.91 -0.02 -0.94 16 25 H 0.16 -1.86 8.06 -2.91 -0.02 -1.88 16 26 H 0.15 -1.86 6.71 -2.91 -0.02 -1.88 16 27 H 0.07 -0.33 8.14 -2.38 -0.02 -0.35 16 28 H 0.10 -0.96 6.39 -2.39 -0.02 -0.97 16 29 H 0.42 -4.00 8.83 -92.71 -0.82 -4.82 16 30 H 0.18 0.25 8.06 -2.91 -0.02 0.23 16 31 H 0.12 -0.04 7.96 -2.39 -0.02 -0.06 16 32 H 0.39 -3.13 8.70 -74.05 -0.64 -3.77 16 33 H -0.27 -1.18 7.11 99.48 0.71 -0.47 16 34 H -0.27 -0.70 7.11 99.48 0.71 0.01 16 35 H 0.11 -1.17 7.63 -2.39 -0.02 -1.19 16 36 H 0.08 -0.82 8.14 -2.39 -0.02 -0.84 16 37 H 0.14 -0.93 8.05 -2.91 -0.02 -0.95 16 Total: 0.00 -18.13 337.93 0.68 -17.45 By element: Atomic # 1 Polarization: -19.01 SS G_CDS: -0.29 Total: -19.30 kcal Atomic # 6 Polarization: 6.66 SS G_CDS: 5.33 Total: 11.99 kcal Atomic # 7 Polarization: -4.42 SS G_CDS: -3.41 Total: -7.83 kcal Atomic # 8 Polarization: 0.22 SS G_CDS: -1.92 Total: -1.69 kcal Atomic # 14 Polarization: -1.39 SS G_CDS: 2.13 Total: 0.75 kcal Atomic # 16 Polarization: -0.20 SS G_CDS: -1.16 Total: -1.37 kcal Total: -18.13 0.68 -17.45 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_15356834_15704118.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.822 kcal (2) G-P(sol) polarization free energy of solvation -18.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.451 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds