Wall clock time and date at job start Mon Mar 8 2021 06:54:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.33325 * 125.94950 * 2 1 4 4 C 1.50697 * 122.71023 * 359.97438 * 3 2 1 5 5 O 1.42902 * 109.47036 * 113.57057 * 4 3 2 6 6 Si 1.86305 * 109.46895 * 233.56348 * 4 3 2 7 7 N 1.32126 * 114.57834 * 180.02562 * 3 2 1 8 8 C 1.29685 * 116.86489 * 359.97438 * 7 3 2 9 9 N 1.38613 * 124.94892 * 179.97438 * 8 7 3 10 10 C 1.46501 * 119.99975 * 179.97438 * 9 8 7 11 11 H 1.08992 * 112.84949 * 23.81040 * 10 9 8 12 12 C 1.53786 * 113.61183 * 155.00256 * 10 9 8 13 13 C 1.53776 * 87.08027 * 89.11838 * 12 10 9 14 14 H 1.09000 * 113.61564 * 270.80032 * 13 12 10 15 15 C 1.50700 * 113.61676 * 139.98025 * 13 12 10 16 16 C 1.37930 * 119.92569 * 119.97399 * 15 13 12 17 17 C 1.39653 * 119.84498 * 180.02562 * 16 15 13 18 18 C 1.43196 * 120.14757 * 179.97438 * 17 16 15 19 19 N 9.97053 * 161.33108 * 129.61351 * 8 1 2 20 20 C 1.39609 * 119.70118 * 359.97438 * 17 16 15 21 21 C 1.37971 * 119.84575 * 0.03083 * 20 17 16 22 22 C 1.38340 * 120.15307 * 359.96439 * 21 20 17 23 23 C 1.53779 * 113.61557 * 252.49921 * 10 9 8 24 24 S 1.70968 * 110.10420 * 0.24655 * 8 7 3 25 25 H 1.09004 * 109.47579 * 84.86986 * 1 2 3 26 26 H 1.09009 * 109.46877 * 204.86731 * 1 2 3 27 27 H 1.09004 * 109.47494 * 324.86464 * 1 2 3 28 28 H 1.08994 * 109.47331 * 353.56621 * 4 3 2 29 29 H 0.96697 * 114.00648 * 59.99704 * 5 4 3 30 30 H 1.48497 * 109.99989 * 58.68354 * 6 4 3 31 31 H 1.48499 * 109.99712 * 180.02562 * 6 4 3 32 32 H 0.97004 * 119.99915 * 0.02562 * 9 8 7 33 33 H 1.08999 * 113.61477 * 334.57098 * 12 10 9 34 34 H 1.08995 * 113.61300 * 203.66975 * 12 10 9 35 35 H 1.07996 * 120.07285 * 359.97438 * 16 15 13 36 36 H 1.07996 * 120.07970 * 179.97438 * 20 17 16 37 37 H 1.07998 * 119.92228 * 180.02562 * 21 20 17 38 38 H 1.07998 * 119.85227 * 180.27905 * 22 21 20 39 39 H 1.08997 * 113.61297 * 156.33690 * 23 10 9 40 40 H 1.08999 * 113.61772 * 25.43483 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2897 1.0793 0.0000 4 6 1.7413 2.4830 -0.0006 5 8 2.0693 3.1230 1.2343 6 14 2.4876 3.4406 -1.4137 7 7 3.5850 0.8188 -0.0005 8 6 3.9314 -0.4309 -0.0005 9 7 5.2384 -0.8926 -0.0015 10 6 5.5065 -2.3329 -0.0007 11 1 4.6802 -2.9174 -0.4049 12 6 6.8742 -2.7052 -0.5973 13 6 7.4484 -2.5436 0.8200 14 1 7.7811 -1.5299 1.0435 15 6 8.4734 -3.5884 1.1789 16 6 9.7577 -3.2078 1.5080 17 6 10.7064 -4.1774 1.8398 18 6 12.0417 -3.7897 2.1820 19 7 13.0994 -3.4856 2.4548 20 6 10.3471 -5.5265 1.8363 21 6 9.0589 -5.8931 1.5049 22 6 8.1240 -4.9274 1.1774 23 6 6.0372 -2.8600 1.3429 24 16 2.5413 -1.4261 -0.0066 25 1 -0.3634 0.0919 -1.0236 26 1 -0.3633 -0.9325 0.4322 27 1 -0.3634 0.8404 0.5914 28 1 0.6580 2.4498 -0.1161 29 1 3.0191 3.1878 1.4036 30 1 2.1806 2.7677 -2.7014 31 1 1.9552 4.8269 -1.4249 32 1 5.9755 -0.2620 -0.0019 33 1 7.2544 -1.9720 -1.3086 34 1 6.9226 -3.7267 -0.9743 35 1 10.0291 -2.1625 1.5083 36 1 11.0759 -6.2815 2.0914 37 1 8.7795 -6.9363 1.5023 38 1 7.1158 -5.2195 0.9232 39 1 5.8568 -3.9239 1.4964 40 1 5.7418 -2.2519 2.1979 There are 56 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 56 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_15356834_15704122.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:54:35 Heat of formation + Delta-G solvation = 99.999490 kcal Electronic energy + Delta-G solvation = -23735.531735 eV Core-core repulsion = 20223.527522 eV Total energy + Delta-G solvation = -3512.004213 eV No. of doubly occupied orbitals = 56 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 328.099 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.68692 -40.93812 -39.78066 -37.58749 -37.33415 -35.58363 -33.17769 -32.45018 -31.90454 -28.95407 -27.03701 -26.53717 -25.67167 -25.03196 -24.36195 -23.15334 -21.34127 -20.45499 -19.39905 -18.75114 -17.86047 -17.66216 -17.45646 -16.98006 -16.55802 -16.38446 -15.94922 -15.72063 -15.29837 -15.22056 -15.13609 -14.70333 -14.46986 -14.19740 -14.12123 -14.03287 -13.97181 -13.77760 -13.72525 -13.54769 -13.24729 -13.05308 -12.84860 -12.70367 -12.37360 -12.03479 -11.99276 -11.84408 -11.53002 -11.06023 -10.64632 -10.38578 -10.12467 -10.00429 -9.90762 -8.67861 -4.83150 -0.35392 -0.02092 0.11925 0.15207 0.75076 1.34184 1.68031 1.74892 1.76290 1.87089 1.91587 2.08346 2.72292 2.79515 3.12481 3.32093 3.39724 3.43308 3.59782 3.67654 3.69092 3.85503 3.87815 4.01528 4.04355 4.17588 4.19709 4.25489 4.43051 4.43496 4.49550 4.55104 4.59559 4.69958 4.75535 4.77770 4.82648 4.90076 4.92706 5.12455 5.15946 5.18643 5.33087 5.57515 5.62766 6.22564 6.47655 6.61666 6.90161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.247 4.247 3 C 0.074 3.926 4 C -0.033 4.033 5 O -0.536 6.536 6 Si 0.709 3.291 7 N -0.540 5.540 8 C 0.321 3.679 9 N -0.676 5.676 10 C 0.124 3.876 11 H 0.098 0.902 12 C -0.132 4.132 13 C -0.073 4.073 14 H 0.103 0.897 15 C -0.073 4.073 16 C -0.066 4.066 17 C -0.024 4.024 18 C 0.250 3.750 19 N -0.411 5.411 20 C -0.073 4.073 21 C -0.115 4.115 22 C -0.088 4.088 23 C -0.148 4.148 24 S 0.106 5.894 25 H 0.072 0.928 26 H 0.070 0.930 27 H 0.079 0.921 28 H 0.119 0.881 29 H 0.382 0.618 30 H -0.261 1.261 31 H -0.252 1.252 32 H 0.414 0.586 33 H 0.083 0.917 34 H 0.104 0.896 35 H 0.132 0.868 36 H 0.133 0.867 37 H 0.135 0.865 38 H 0.132 0.868 39 H 0.100 0.900 40 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.385 -4.615 -1.774 5.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.370 4.370 3 C -0.057 4.057 4 C -0.146 4.146 5 O -0.342 6.342 6 Si 0.609 3.391 7 N -0.266 5.266 8 C -0.050 4.050 9 N -0.316 5.316 10 C 0.018 3.982 11 H 0.116 0.884 12 C -0.171 4.171 13 C -0.091 4.091 14 H 0.121 0.879 15 C -0.073 4.073 16 C -0.087 4.087 17 C -0.028 4.028 18 C -0.066 4.066 19 N -0.085 5.085 20 C -0.094 4.094 21 C -0.133 4.133 22 C -0.106 4.106 23 C -0.187 4.187 24 S 0.355 5.645 25 H 0.091 0.909 26 H 0.089 0.911 27 H 0.098 0.902 28 H 0.136 0.864 29 H 0.230 0.770 30 H -0.186 1.186 31 H -0.177 1.177 32 H 0.253 0.747 33 H 0.102 0.898 34 H 0.122 0.878 35 H 0.150 0.850 36 H 0.151 0.849 37 H 0.153 0.847 38 H 0.150 0.850 39 H 0.119 0.881 40 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -1.263 -4.517 -2.065 5.124 hybrid contribution -0.610 0.399 0.232 0.765 sum -1.873 -4.118 -1.833 4.881 Atomic orbital electron populations 1.20200 0.86984 1.03378 1.02687 1.25127 1.01142 0.93349 1.17394 1.20064 0.86910 0.97136 1.01559 1.24725 1.02947 0.89797 0.97120 1.86469 1.29924 1.79526 1.38237 0.93810 0.91348 0.78592 0.75306 1.65951 1.17036 1.16588 1.27002 1.23237 0.91647 0.91585 0.98533 1.43551 1.01811 1.06130 1.80101 1.21974 0.98559 0.79973 0.97722 0.88441 1.23446 0.93664 1.03684 0.96268 1.21599 0.92858 0.98045 0.96611 0.87877 1.19564 0.93785 0.94291 0.99629 1.21092 0.91896 0.99129 0.96554 1.15994 0.86592 0.94299 1.05886 1.25648 0.92874 0.94071 0.94012 1.81224 1.11614 1.07249 1.08454 1.21249 0.97086 0.94032 0.97002 1.21129 0.92634 1.00264 0.99286 1.21285 0.99937 0.92144 0.97257 1.23699 0.94517 1.02672 0.97853 1.83922 0.96461 1.10183 1.73953 0.90909 0.91132 0.90206 0.86413 0.76969 1.18553 1.17665 0.74723 0.89840 0.87778 0.84965 0.84886 0.84666 0.85047 0.88142 0.90056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 0.03 9.71 36.00 0.35 0.38 16 2 C -0.25 -0.36 6.57 -36.03 -0.24 -0.60 16 3 C 0.07 0.15 5.19 -84.18 -0.44 -0.29 16 4 C -0.03 -0.04 2.84 36.00 0.10 0.06 16 5 O -0.54 -1.03 12.88 -35.23 -0.45 -1.48 16 6 Si 0.71 0.59 32.62 -169.99 -5.54 -4.96 16 7 N -0.54 -0.91 9.77 -11.36 -0.11 -1.02 16 8 C 0.32 0.11 8.24 -87.68 -0.72 -0.61 16 9 N -0.68 1.62 5.42 -54.99 -0.30 1.32 16 10 C 0.12 -0.52 4.32 -67.12 -0.29 -0.81 16 11 H 0.10 -0.40 7.05 -51.93 -0.37 -0.76 16 12 C -0.13 0.68 7.29 -25.92 -0.19 0.49 16 13 C -0.07 0.35 3.85 -90.96 -0.35 -0.01 16 14 H 0.10 -0.51 8.09 -51.93 -0.42 -0.93 16 15 C -0.07 0.26 5.28 -104.68 -0.55 -0.29 16 16 C -0.07 0.16 9.41 -39.17 -0.37 -0.21 16 17 C -0.02 0.03 5.73 -106.93 -0.61 -0.58 16 18 C 0.25 0.40 15.32 -22.55 -0.35 0.06 16 19 N -0.41 -1.88 18.52 41.75 0.77 -1.11 16 20 C -0.07 0.18 9.76 -39.17 -0.38 -0.20 16 21 C -0.12 0.43 10.03 -39.64 -0.40 0.03 16 22 C -0.09 0.36 8.61 -39.49 -0.34 0.02 16 23 C -0.15 0.68 7.25 -25.92 -0.19 0.49 16 24 S 0.11 0.00 21.68 -107.50 -2.33 -2.33 16 25 H 0.07 -0.09 8.14 -51.93 -0.42 -0.51 16 26 H 0.07 -0.09 8.14 -51.92 -0.42 -0.51 16 27 H 0.08 -0.05 7.17 -51.93 -0.37 -0.42 16 28 H 0.12 0.08 6.33 -51.93 -0.33 -0.25 16 29 H 0.38 -0.34 8.70 45.56 0.40 0.06 16 30 H -0.26 -0.89 7.11 56.52 0.40 -0.49 16 31 H -0.25 -0.76 7.11 56.52 0.40 -0.36 16 32 H 0.41 -1.35 8.83 -40.82 -0.36 -1.71 16 33 H 0.08 -0.40 8.14 -51.93 -0.42 -0.83 16 34 H 0.10 -0.60 7.72 -51.93 -0.40 -1.00 16 35 H 0.13 -0.45 8.05 -52.49 -0.42 -0.87 16 36 H 0.13 -0.47 8.06 -52.49 -0.42 -0.89 16 37 H 0.14 -0.74 8.06 -52.49 -0.42 -1.17 16 38 H 0.13 -0.79 6.63 -52.49 -0.35 -1.14 16 39 H 0.10 -0.55 6.29 -51.93 -0.33 -0.88 16 40 H 0.08 -0.26 8.14 -51.93 -0.42 -0.69 16 LS Contribution 358.07 15.07 5.40 5.40 Total: 0.00 -7.37 358.07 -12.21 -19.58 By element: Atomic # 1 Polarization: -8.67 SS G_CDS: -4.68 Total: -13.35 kcal Atomic # 6 Polarization: 2.90 SS G_CDS: -4.96 Total: -2.06 kcal Atomic # 7 Polarization: -1.17 SS G_CDS: 0.36 Total: -0.80 kcal Atomic # 8 Polarization: -1.03 SS G_CDS: -0.45 Total: -1.48 kcal Atomic # 14 Polarization: 0.59 SS G_CDS: -5.54 Total: -4.96 kcal Atomic # 16 Polarization: 0.00 SS G_CDS: -2.33 Total: -2.33 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -7.37 -12.21 -19.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_15356834_15704122.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.584 kcal (2) G-P(sol) polarization free energy of solvation -7.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.585 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds