Wall clock time and date at job start Mon Mar 8 2021 06:54:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.33325 * 125.94950 * 2 1 4 4 C 1.50697 * 122.71023 * 359.97438 * 3 2 1 5 5 O 1.42902 * 109.47036 * 113.57057 * 4 3 2 6 6 Si 1.86305 * 109.46895 * 233.56348 * 4 3 2 7 7 N 1.32126 * 114.57834 * 180.02562 * 3 2 1 8 8 C 1.29685 * 116.86489 * 359.97438 * 7 3 2 9 9 N 1.38613 * 124.94892 * 179.97438 * 8 7 3 10 10 C 1.46501 * 119.99975 * 179.97438 * 9 8 7 11 11 H 1.08992 * 112.84949 * 23.81040 * 10 9 8 12 12 C 1.53786 * 113.61183 * 155.00256 * 10 9 8 13 13 C 1.53776 * 87.08027 * 89.11838 * 12 10 9 14 14 H 1.09000 * 113.61564 * 270.80032 * 13 12 10 15 15 C 1.50700 * 113.61676 * 139.98025 * 13 12 10 16 16 C 1.37930 * 119.92569 * 119.97399 * 15 13 12 17 17 C 1.39653 * 119.84498 * 180.02562 * 16 15 13 18 18 C 1.43196 * 120.14757 * 179.97438 * 17 16 15 19 19 N 9.97053 * 161.33108 * 129.61351 * 8 1 2 20 20 C 1.39609 * 119.70118 * 359.97438 * 17 16 15 21 21 C 1.37971 * 119.84575 * 0.03083 * 20 17 16 22 22 C 1.38340 * 120.15307 * 359.96439 * 21 20 17 23 23 C 1.53779 * 113.61557 * 252.49921 * 10 9 8 24 24 S 1.70968 * 110.10420 * 0.24655 * 8 7 3 25 25 H 1.09004 * 109.47579 * 84.86986 * 1 2 3 26 26 H 1.09009 * 109.46877 * 204.86731 * 1 2 3 27 27 H 1.09004 * 109.47494 * 324.86464 * 1 2 3 28 28 H 1.08994 * 109.47331 * 353.56621 * 4 3 2 29 29 H 0.96697 * 114.00648 * 59.99704 * 5 4 3 30 30 H 1.48497 * 109.99989 * 58.68354 * 6 4 3 31 31 H 1.48499 * 109.99712 * 180.02562 * 6 4 3 32 32 H 0.97004 * 119.99915 * 0.02562 * 9 8 7 33 33 H 1.08999 * 113.61477 * 334.57098 * 12 10 9 34 34 H 1.08995 * 113.61300 * 203.66975 * 12 10 9 35 35 H 1.07996 * 120.07285 * 359.97438 * 16 15 13 36 36 H 1.07996 * 120.07970 * 179.97438 * 20 17 16 37 37 H 1.07998 * 119.92228 * 180.02562 * 21 20 17 38 38 H 1.07998 * 119.85227 * 180.27905 * 22 21 20 39 39 H 1.08997 * 113.61297 * 156.33690 * 23 10 9 40 40 H 1.08999 * 113.61772 * 25.43483 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2897 1.0793 0.0000 4 6 1.7413 2.4830 -0.0006 5 8 2.0693 3.1230 1.2343 6 14 2.4876 3.4406 -1.4137 7 7 3.5850 0.8188 -0.0005 8 6 3.9314 -0.4309 -0.0005 9 7 5.2384 -0.8926 -0.0015 10 6 5.5065 -2.3329 -0.0007 11 1 4.6802 -2.9174 -0.4049 12 6 6.8742 -2.7052 -0.5973 13 6 7.4484 -2.5436 0.8200 14 1 7.7811 -1.5299 1.0435 15 6 8.4734 -3.5884 1.1789 16 6 9.7577 -3.2078 1.5080 17 6 10.7064 -4.1774 1.8398 18 6 12.0417 -3.7897 2.1820 19 7 13.0994 -3.4856 2.4548 20 6 10.3471 -5.5265 1.8363 21 6 9.0589 -5.8931 1.5049 22 6 8.1240 -4.9274 1.1774 23 6 6.0372 -2.8600 1.3429 24 16 2.5413 -1.4261 -0.0066 25 1 -0.3634 0.0919 -1.0236 26 1 -0.3633 -0.9325 0.4322 27 1 -0.3634 0.8404 0.5914 28 1 0.6580 2.4498 -0.1161 29 1 3.0191 3.1878 1.4036 30 1 2.1806 2.7677 -2.7014 31 1 1.9552 4.8269 -1.4249 32 1 5.9755 -0.2620 -0.0019 33 1 7.2544 -1.9720 -1.3086 34 1 6.9226 -3.7267 -0.9743 35 1 10.0291 -2.1625 1.5083 36 1 11.0759 -6.2815 2.0914 37 1 8.7795 -6.9363 1.5023 38 1 7.1158 -5.2195 0.9232 39 1 5.8568 -3.9239 1.4964 40 1 5.7418 -2.2519 2.1979 There are 56 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 56 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_15356834_15704122.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:54:34 Heat of formation + Delta-G solvation = 105.186343 kcal Electronic energy + Delta-G solvation = -23735.306816 eV Core-core repulsion = 20223.527522 eV Total energy + Delta-G solvation = -3511.779294 eV No. of doubly occupied orbitals = 56 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 328.099 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.41877 -40.90201 -39.56619 -37.67696 -37.42268 -35.46820 -33.07595 -32.21884 -31.70240 -28.96302 -26.65346 -26.30682 -25.61749 -24.87151 -24.29794 -22.88040 -21.15712 -20.38472 -19.25037 -18.62163 -17.92974 -17.52675 -17.22793 -16.71975 -16.50125 -16.19879 -15.75842 -15.70127 -15.32910 -15.17939 -14.98591 -14.49822 -14.32719 -14.22731 -14.14519 -14.06926 -13.88067 -13.78777 -13.52352 -13.37964 -13.08457 -12.85244 -12.74442 -12.48176 -12.44636 -11.93783 -11.73636 -11.68824 -11.23065 -10.94655 -10.64531 -10.43409 -10.00179 -9.89356 -9.64800 -8.61043 -4.92753 -0.17054 -0.02622 0.18478 0.39630 0.74275 1.26553 1.57895 1.62272 1.81370 1.92337 1.93835 1.98620 2.84374 2.87631 3.41543 3.47894 3.64319 3.68745 3.74085 3.95002 4.01558 4.02178 4.17860 4.20390 4.21324 4.35093 4.43694 4.49459 4.55198 4.68214 4.80459 4.84065 4.87210 4.92140 4.95317 5.04205 5.08895 5.12642 5.18473 5.28183 5.37408 5.45790 5.61782 5.79486 5.92574 6.38777 6.40151 6.64627 6.93160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.269 4.269 3 C 0.060 3.940 4 C -0.036 4.036 5 O -0.549 6.549 6 Si 0.776 3.224 7 N -0.558 5.558 8 C 0.314 3.686 9 N -0.668 5.668 10 C 0.119 3.881 11 H 0.101 0.899 12 C -0.123 4.123 13 C -0.070 4.070 14 H 0.103 0.897 15 C -0.073 4.073 16 C -0.071 4.071 17 C -0.048 4.048 18 C 0.276 3.724 19 N -0.475 5.475 20 C -0.077 4.077 21 C -0.116 4.116 22 C -0.080 4.080 23 C -0.143 4.143 24 S 0.126 5.874 25 H 0.078 0.922 26 H 0.077 0.923 27 H 0.079 0.921 28 H 0.121 0.879 29 H 0.393 0.607 30 H -0.296 1.296 31 H -0.283 1.283 32 H 0.418 0.582 33 H 0.082 0.918 34 H 0.117 0.883 35 H 0.135 0.865 36 H 0.138 0.862 37 H 0.157 0.843 38 H 0.157 0.843 39 H 0.116 0.884 40 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.291 -6.049 -2.050 7.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.393 4.393 3 C -0.071 4.071 4 C -0.149 4.149 5 O -0.356 6.356 6 Si 0.681 3.319 7 N -0.285 5.285 8 C -0.058 4.058 9 N -0.308 5.308 10 C 0.013 3.987 11 H 0.119 0.881 12 C -0.161 4.161 13 C -0.088 4.088 14 H 0.121 0.879 15 C -0.073 4.073 16 C -0.091 4.091 17 C -0.051 4.051 18 C -0.039 4.039 19 N -0.151 5.151 20 C -0.098 4.098 21 C -0.134 4.134 22 C -0.099 4.099 23 C -0.182 4.182 24 S 0.375 5.625 25 H 0.097 0.903 26 H 0.096 0.904 27 H 0.097 0.903 28 H 0.139 0.861 29 H 0.242 0.758 30 H -0.223 1.223 31 H -0.210 1.210 32 H 0.257 0.743 33 H 0.101 0.899 34 H 0.135 0.865 35 H 0.153 0.847 36 H 0.156 0.844 37 H 0.174 0.826 38 H 0.174 0.826 39 H 0.134 0.866 40 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -2.137 -5.970 -2.323 6.754 hybrid contribution -0.390 0.782 0.288 0.920 sum -2.527 -5.189 -2.035 6.119 Atomic orbital electron populations 1.20248 0.86100 1.03775 1.03161 1.25456 1.02178 0.94027 1.17594 1.20166 0.87332 0.97402 1.02153 1.24800 1.03215 0.89915 0.97003 1.86433 1.31098 1.79602 1.38507 0.92980 0.90471 0.75570 0.72903 1.65955 1.16967 1.17342 1.28199 1.23513 0.92719 0.91526 0.98028 1.43722 1.00969 1.07091 1.78992 1.22132 0.99260 0.78916 0.98413 0.88135 1.23433 0.92458 1.04372 0.95866 1.21589 0.92466 0.97825 0.96956 0.87866 1.19683 0.93338 0.94990 0.99333 1.21208 0.92287 0.99156 0.96478 1.16120 0.85491 0.95363 1.08128 1.26134 0.93051 0.92397 0.92279 1.81227 1.13495 1.09275 1.11083 1.21416 0.98047 0.93476 0.96841 1.21406 0.91929 1.01524 0.98536 1.21619 1.00948 0.91663 0.95652 1.23698 0.94231 1.03317 0.96936 1.83737 0.95755 1.09233 1.73810 0.90291 0.90362 0.90263 0.86138 0.75760 1.22296 1.20956 0.74272 0.89924 0.86480 0.84678 0.84386 0.82571 0.82598 0.86624 0.91311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 0.06 9.71 71.23 0.69 0.75 16 2 C -0.27 -0.81 6.57 24.57 0.16 -0.65 16 3 C 0.06 0.26 5.19 41.40 0.21 0.47 16 4 C -0.04 -0.12 2.84 71.24 0.20 0.09 16 5 O -0.55 -2.31 12.88 -148.98 -1.92 -4.23 16 6 Si 0.78 1.96 32.62 68.60 2.24 4.19 16 7 N -0.56 -1.94 9.77 -189.86 -1.85 -3.80 16 8 C 0.31 0.10 8.24 179.32 1.48 1.58 16 9 N -0.67 3.71 5.42 -327.89 -1.78 1.93 16 10 C 0.12 -1.17 4.32 45.52 0.20 -0.97 16 11 H 0.10 -1.01 7.05 -2.39 -0.02 -1.02 16 12 C -0.12 1.50 7.29 31.12 0.23 1.73 16 13 C -0.07 0.77 3.85 -11.02 -0.04 0.73 16 14 H 0.10 -1.11 8.09 -2.39 -0.02 -1.13 16 15 C -0.07 0.64 5.28 -19.90 -0.11 0.53 16 16 C -0.07 0.36 9.41 22.54 0.21 0.57 16 17 C -0.05 0.10 5.73 -21.36 -0.12 -0.02 16 18 C 0.28 1.28 15.32 88.36 1.35 2.63 16 19 N -0.47 -5.33 18.52 18.98 0.35 -4.97 16 20 C -0.08 0.43 9.76 22.54 0.22 0.65 16 21 C -0.12 1.10 10.03 22.23 0.22 1.32 16 22 C -0.08 0.86 8.61 22.33 0.19 1.06 16 23 C -0.14 1.55 7.25 31.12 0.23 1.78 16 24 S 0.13 -0.06 21.68 -56.49 -1.22 -1.29 16 25 H 0.08 -0.19 8.14 -2.39 -0.02 -0.21 16 26 H 0.08 -0.22 8.14 -2.38 -0.02 -0.23 16 27 H 0.08 -0.08 7.17 -2.38 -0.02 -0.10 16 28 H 0.12 0.24 6.33 -2.39 -0.02 0.23 16 29 H 0.39 -0.56 8.70 -74.06 -0.64 -1.20 16 30 H -0.30 -2.44 7.11 99.48 0.71 -1.74 16 31 H -0.28 -2.08 7.11 99.48 0.71 -1.37 16 32 H 0.42 -2.98 8.83 -92.71 -0.82 -3.80 16 33 H 0.08 -0.93 8.14 -2.39 -0.02 -0.95 16 34 H 0.12 -1.68 7.72 -2.39 -0.02 -1.69 16 35 H 0.14 -0.87 8.05 -2.91 -0.02 -0.89 16 36 H 0.14 -0.99 8.06 -2.91 -0.02 -1.01 16 37 H 0.16 -2.14 8.06 -2.91 -0.02 -2.16 16 38 H 0.16 -2.46 6.63 -2.91 -0.02 -2.47 16 39 H 0.12 -1.60 6.29 -2.39 -0.02 -1.62 16 40 H 0.07 -0.52 8.14 -2.39 -0.02 -0.54 16 Total: 0.00 -18.64 358.07 0.82 -17.82 By element: Atomic # 1 Polarization: -21.59 SS G_CDS: -0.32 Total: -21.91 kcal Atomic # 6 Polarization: 6.93 SS G_CDS: 5.33 Total: 12.25 kcal Atomic # 7 Polarization: -3.56 SS G_CDS: -3.28 Total: -6.84 kcal Atomic # 8 Polarization: -2.31 SS G_CDS: -1.92 Total: -4.23 kcal Atomic # 14 Polarization: 1.96 SS G_CDS: 2.24 Total: 4.19 kcal Atomic # 16 Polarization: -0.06 SS G_CDS: -1.22 Total: -1.29 kcal Total: -18.64 0.82 -17.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_15356834_15704122.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.006 kcal (2) G-P(sol) polarization free energy of solvation -18.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.820 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds