Wall clock time and date at job start Mon Mar 8 2021 06:54:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13607 * 1 3 3 C 1.43192 * 179.97438 * 2 1 4 4 C 1.39617 * 120.15190 * 164.07706 * 3 2 1 5 5 C 1.37966 * 119.84962 * 180.02562 * 4 3 2 6 6 C 1.38341 * 120.14945 * 359.74251 * 5 4 3 7 7 C 1.38392 * 120.30559 * 0.51439 * 6 5 4 8 8 C 1.50690 * 119.92279 * 179.76619 * 7 6 5 9 9 H 1.09000 * 112.90879 * 168.47364 * 8 7 6 10 10 C 1.53786 * 113.61518 * 299.72017 * 8 7 6 11 11 C 1.53781 * 87.17350 * 140.02616 * 10 8 7 12 12 H 1.08998 * 113.61196 * 219.97759 * 11 10 8 13 13 N 1.46506 * 113.61613 * 89.15811 * 11 10 8 14 14 C 1.39139 * 120.00128 * 154.99523 * 13 11 10 15 15 N 1.32333 * 119.71808 * 0.02562 * 14 13 11 16 16 C 1.32008 * 121.64805 * 179.97438 * 15 14 13 17 17 C 1.37987 * 120.90030 * 0.02562 * 16 15 14 18 18 C 1.50697 * 120.32398 * 179.97438 * 17 16 15 19 19 O 1.42901 * 109.47085 * 119.99940 * 18 17 16 20 20 Si 1.86295 * 109.47535 * 359.97438 * 18 17 16 21 21 C 1.38907 * 119.34578 * 359.97438 * 17 16 15 22 22 C 1.38448 * 118.48372 * 359.75418 * 21 17 16 23 23 F 1.35097 * 120.46962 * 180.26790 * 22 21 17 24 24 C 1.53781 * 87.08070 * 334.52830 * 11 10 8 25 25 C 1.37923 * 120.14970 * 359.48398 * 7 6 5 26 26 H 1.07998 * 120.07048 * 0.04329 * 4 3 2 27 27 H 1.07997 * 119.92190 * 179.97438 * 5 4 3 28 28 H 1.08000 * 119.85032 * 180.25826 * 6 5 4 29 29 H 1.09002 * 113.61357 * 25.43533 * 10 8 7 30 30 H 1.09002 * 113.61608 * 254.61695 * 10 8 7 31 31 H 0.97003 * 119.99276 * 335.00814 * 13 11 10 32 32 H 1.07997 * 119.55092 * 179.97438 * 16 15 14 33 33 H 1.09004 * 109.46943 * 239.99148 * 18 17 16 34 34 H 0.96699 * 113.99669 * 299.99736 * 19 18 17 35 35 H 1.48501 * 110.00219 * 180.02562 * 20 18 17 36 36 H 1.48500 * 110.00190 * 301.32164 * 20 18 17 37 37 H 1.07991 * 120.75678 * 180.02562 * 21 17 16 38 38 H 1.09005 * 113.61471 * 139.98321 * 24 11 10 39 39 H 1.08996 * 113.61178 * 270.79663 * 24 11 10 40 40 H 1.08001 * 120.07915 * 180.23420 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2688 1.1619 -0.3312 5 6 4.6484 1.1554 -0.3297 6 6 5.3374 0.0031 0.0041 7 6 4.6492 -1.1529 0.3283 8 6 5.4085 -2.4046 0.6855 9 1 4.7717 -3.1803 1.1108 10 6 6.3272 -2.9101 -0.4395 11 6 7.3600 -3.2336 0.6530 12 1 8.3852 -2.9970 0.3683 13 7 7.2211 -4.5809 1.2114 14 6 8.3195 -5.2121 1.7868 15 7 9.4869 -4.5901 1.8272 16 6 10.5533 -5.1529 2.3643 17 6 10.4886 -6.4200 2.9068 18 6 11.7144 -7.0503 3.5161 19 8 11.4650 -7.3435 4.8923 20 14 13.1507 -5.8715 3.3822 21 6 9.2826 -7.1088 2.8855 22 6 8.1795 -6.4915 2.3208 23 9 6.9855 -7.1226 2.2837 24 6 6.6883 -2.1409 1.5013 25 6 3.2700 -1.1604 0.3309 26 1 2.7320 2.0633 -0.5877 27 1 5.1916 2.0528 -0.5861 28 1 6.4174 0.0046 0.0078 29 1 6.6485 -2.1267 -1.1259 30 1 5.9440 -3.7919 -0.9531 31 1 6.3634 -5.0329 1.1798 32 1 11.4895 -4.6145 2.3787 33 1 11.9508 -7.9725 2.9853 34 1 11.2476 -6.5675 5.4267 35 1 14.3659 -6.4816 3.9791 36 1 13.3998 -5.5342 1.9576 37 1 9.2061 -8.1015 3.3039 38 1 6.5958 -2.4019 2.5556 39 1 7.1094 -1.1475 1.3466 40 1 2.7341 -2.0622 0.5877 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_15356834_17656566.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:54:39 Heat of formation + Delta-G solvation = 54.175549 kcal Electronic energy + Delta-G solvation = -25618.946278 eV Core-core repulsion = 21701.886386 eV Total energy + Delta-G solvation = -3917.059891 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 326.117 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -49.90359 -41.74005 -41.15534 -39.63654 -38.00191 -37.33311 -35.54183 -33.25499 -32.46594 -32.39480 -30.94653 -26.97561 -26.85254 -26.15085 -25.19008 -24.53922 -23.04171 -22.90890 -20.83961 -19.58606 -19.14935 -18.44414 -18.20409 -17.56418 -17.48229 -16.99321 -16.90290 -16.31837 -16.22404 -16.08829 -15.80063 -15.39910 -15.28496 -15.06473 -14.80900 -14.60718 -14.37733 -14.16404 -14.09974 -13.97636 -13.71289 -13.64427 -13.52016 -13.17958 -12.89888 -12.70889 -12.61781 -12.11741 -12.03694 -11.95347 -11.40635 -11.23942 -10.71353 -10.68790 -10.49608 -10.07735 -9.85024 -8.81936 -5.12096 -0.31041 -0.10858 0.07995 0.17082 1.19408 1.54392 1.69446 1.85416 1.90503 1.90584 2.51046 2.76483 2.83030 3.00227 3.17133 3.33710 3.37349 3.52261 3.55330 3.57311 3.70009 3.79995 3.80518 3.92085 3.93837 3.99322 4.10388 4.31952 4.37648 4.41786 4.52656 4.56663 4.60469 4.66098 4.71231 4.79723 4.85347 4.91076 4.94270 5.00818 5.17181 5.21374 5.36457 5.42346 5.67728 5.91982 6.11594 6.49242 6.50329 6.90229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.412 5.412 2 C 0.250 3.750 3 C -0.025 4.025 4 C -0.074 4.074 5 C -0.115 4.115 6 C -0.087 4.087 7 C -0.071 4.071 8 C -0.076 4.076 9 H 0.099 0.901 10 C -0.138 4.138 11 C 0.133 3.867 12 H 0.111 0.889 13 N -0.700 5.700 14 C 0.392 3.608 15 N -0.510 5.510 16 C 0.147 3.853 17 C -0.209 4.209 18 C -0.055 4.055 19 O -0.540 6.540 20 Si 0.686 3.314 21 C -0.038 4.038 22 C -0.020 4.020 23 F -0.133 7.133 24 C -0.144 4.144 25 C -0.068 4.068 26 H 0.133 0.867 27 H 0.135 0.865 28 H 0.133 0.867 29 H 0.101 0.899 30 H 0.077 0.923 31 H 0.413 0.587 32 H 0.163 0.837 33 H 0.116 0.884 34 H 0.380 0.620 35 H -0.252 1.252 36 H -0.254 1.254 37 H 0.150 0.850 38 H 0.075 0.925 39 H 0.097 0.903 40 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.464 2.776 0.331 6.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.087 5.087 2 C -0.066 4.066 3 C -0.028 4.028 4 C -0.095 4.095 5 C -0.133 4.133 6 C -0.105 4.105 7 C -0.071 4.071 8 C -0.095 4.095 9 H 0.117 0.883 10 C -0.177 4.177 11 C 0.027 3.973 12 H 0.129 0.871 13 N -0.332 5.332 14 C 0.154 3.846 15 N -0.226 5.226 16 C -0.010 4.010 17 C -0.214 4.214 18 C -0.167 4.167 19 O -0.346 6.346 20 Si 0.588 3.412 21 C -0.064 4.064 22 C -0.046 4.046 23 F -0.112 7.112 24 C -0.183 4.183 25 C -0.088 4.088 26 H 0.151 0.849 27 H 0.153 0.847 28 H 0.150 0.850 29 H 0.119 0.881 30 H 0.095 0.905 31 H 0.250 0.750 32 H 0.180 0.820 33 H 0.133 0.867 34 H 0.227 0.773 35 H -0.176 1.176 36 H -0.178 1.178 37 H 0.167 0.833 38 H 0.094 0.906 39 H 0.115 0.885 40 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 4.667 3.293 -0.630 5.747 hybrid contribution -0.750 -1.621 0.071 1.788 sum 3.917 1.672 -0.559 4.296 Atomic orbital electron populations 1.81313 1.12064 1.07033 1.08292 1.25747 0.92709 0.94095 0.94016 1.15988 0.84298 0.95934 1.06611 1.21239 0.94545 0.96735 0.96938 1.21129 0.93563 0.98819 0.99824 1.21303 1.00655 0.92029 0.96542 1.19594 0.92712 0.95314 0.99478 1.21679 0.95191 0.94798 0.97790 0.88285 1.23479 0.95762 1.02077 0.96337 1.21813 1.00680 0.81160 0.93670 0.87150 1.44229 1.09307 1.16868 1.62829 1.18378 0.88321 0.87145 0.90715 1.67280 0.97743 1.35868 1.21740 1.22350 0.95803 0.91318 0.91518 1.20947 0.96828 0.96787 1.06842 1.24866 1.01086 1.06384 0.84360 1.86514 1.92636 1.37552 1.17857 0.94837 0.77321 0.85360 0.83684 1.21286 0.90244 1.00487 0.94371 1.18002 0.83303 0.92891 1.10402 1.91496 1.42892 1.81650 1.95199 1.23661 0.94921 0.99838 0.99885 1.21089 0.93701 0.96796 0.97231 0.84916 0.84673 0.84966 0.88093 0.90468 0.75007 0.82003 0.86705 0.77275 1.17620 1.17848 0.83272 0.90616 0.88456 0.85071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -2.07 18.54 41.84 0.78 -1.30 16 2 C 0.25 0.53 15.33 -22.47 -0.34 0.19 16 3 C -0.03 0.01 5.73 -106.93 -0.61 -0.60 16 4 C -0.07 0.14 9.76 -39.17 -0.38 -0.24 16 5 C -0.12 0.36 10.03 -39.64 -0.40 -0.04 16 6 C -0.09 0.28 8.62 -39.49 -0.34 -0.06 16 7 C -0.07 0.19 5.29 -104.69 -0.55 -0.37 16 8 C -0.08 0.27 3.87 -90.82 -0.35 -0.08 16 9 H 0.10 -0.36 8.09 -51.93 -0.42 -0.78 16 10 C -0.14 0.51 7.28 -25.92 -0.19 0.32 16 11 C 0.13 -0.34 4.35 -67.11 -0.29 -0.64 16 12 H 0.11 -0.19 7.41 -51.93 -0.38 -0.57 16 13 N -0.70 0.96 5.42 -53.06 -0.29 0.67 16 14 C 0.39 0.17 7.49 -154.87 -1.16 -0.99 16 15 N -0.51 -0.21 9.13 -12.37 -0.11 -0.33 16 16 C 0.15 -0.15 9.84 -17.57 -0.17 -0.32 16 17 C -0.21 0.21 5.40 -104.47 -0.56 -0.35 16 18 C -0.06 0.09 2.83 36.00 0.10 0.19 16 19 O -0.54 0.57 12.78 -35.23 -0.45 0.12 16 20 Si 0.69 -1.76 29.82 -169.99 -5.07 -6.83 16 21 C -0.04 0.00 9.75 -39.26 -0.38 -0.38 16 22 C -0.02 -0.02 7.35 -39.09 -0.29 -0.30 16 23 F -0.13 -0.20 16.65 2.25 0.04 -0.16 16 24 C -0.14 0.47 7.26 -25.78 -0.19 0.28 16 25 C -0.07 0.11 9.41 -39.17 -0.37 -0.26 16 26 H 0.13 -0.40 8.06 -52.49 -0.42 -0.82 16 27 H 0.14 -0.67 8.06 -52.49 -0.42 -1.09 16 28 H 0.13 -0.66 6.63 -52.49 -0.35 -1.01 16 29 H 0.10 -0.43 7.73 -51.93 -0.40 -0.83 16 30 H 0.08 -0.25 8.14 -51.93 -0.42 -0.68 16 31 H 0.41 -0.92 8.18 -40.82 -0.33 -1.25 16 32 H 0.16 -0.53 4.88 -52.49 -0.26 -0.79 16 33 H 0.12 -0.15 7.96 -51.93 -0.41 -0.56 16 34 H 0.38 -1.84 8.70 45.56 0.40 -1.45 16 35 H -0.25 -0.23 7.11 56.52 0.40 0.17 16 36 H -0.25 0.11 7.11 56.52 0.40 0.51 16 37 H 0.15 -0.10 8.06 -52.49 -0.42 -0.52 16 38 H 0.08 -0.15 8.14 -51.93 -0.42 -0.57 16 39 H 0.10 -0.40 6.31 -51.93 -0.33 -0.73 16 40 H 0.13 -0.33 8.05 -52.49 -0.42 -0.75 16 LS Contribution 350.52 15.07 5.28 5.28 Total: 0.00 -7.39 350.52 -10.53 -17.92 By element: Atomic # 1 Polarization: -7.50 SS G_CDS: -4.22 Total: -11.73 kcal Atomic # 6 Polarization: 2.83 SS G_CDS: -6.48 Total: -3.65 kcal Atomic # 7 Polarization: -1.33 SS G_CDS: 0.38 Total: -0.95 kcal Atomic # 8 Polarization: 0.57 SS G_CDS: -0.45 Total: 0.12 kcal Atomic # 9 Polarization: -0.20 SS G_CDS: 0.04 Total: -0.16 kcal Atomic # 14 Polarization: -1.76 SS G_CDS: -5.07 Total: -6.83 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -7.39 -10.53 -17.92 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_15356834_17656566.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.095 kcal (2) G-P(sol) polarization free energy of solvation -7.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.920 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds