Wall clock time and date at job start Mon Mar 8 2021 06:54:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13607 * 1 3 3 C 1.43192 * 179.97438 * 2 1 4 4 C 1.39617 * 120.15190 * 164.07706 * 3 2 1 5 5 C 1.37966 * 119.84962 * 180.02562 * 4 3 2 6 6 C 1.38341 * 120.14945 * 359.74251 * 5 4 3 7 7 C 1.38392 * 120.30559 * 0.51439 * 6 5 4 8 8 C 1.50690 * 119.92279 * 179.76619 * 7 6 5 9 9 H 1.09000 * 112.90879 * 168.47364 * 8 7 6 10 10 C 1.53786 * 113.61518 * 299.72017 * 8 7 6 11 11 C 1.53781 * 87.17350 * 140.02616 * 10 8 7 12 12 H 1.08998 * 113.61196 * 219.97759 * 11 10 8 13 13 N 1.46506 * 113.61613 * 89.15811 * 11 10 8 14 14 C 1.39139 * 120.00128 * 154.99523 * 13 11 10 15 15 N 1.32333 * 119.71808 * 0.02562 * 14 13 11 16 16 C 1.32008 * 121.64805 * 179.97438 * 15 14 13 17 17 C 1.37987 * 120.90030 * 0.02562 * 16 15 14 18 18 C 1.50697 * 120.32398 * 179.97438 * 17 16 15 19 19 O 1.42901 * 109.47085 * 119.99940 * 18 17 16 20 20 Si 1.86295 * 109.47535 * 359.97438 * 18 17 16 21 21 C 1.38907 * 119.34578 * 359.97438 * 17 16 15 22 22 C 1.38448 * 118.48372 * 359.75418 * 21 17 16 23 23 F 1.35097 * 120.46962 * 180.26790 * 22 21 17 24 24 C 1.53781 * 87.08070 * 334.52830 * 11 10 8 25 25 C 1.37923 * 120.14970 * 359.48398 * 7 6 5 26 26 H 1.07998 * 120.07048 * 0.04329 * 4 3 2 27 27 H 1.07997 * 119.92190 * 179.97438 * 5 4 3 28 28 H 1.08000 * 119.85032 * 180.25826 * 6 5 4 29 29 H 1.09002 * 113.61357 * 25.43533 * 10 8 7 30 30 H 1.09002 * 113.61608 * 254.61695 * 10 8 7 31 31 H 0.97003 * 119.99276 * 335.00814 * 13 11 10 32 32 H 1.07997 * 119.55092 * 179.97438 * 16 15 14 33 33 H 1.09004 * 109.46943 * 239.99148 * 18 17 16 34 34 H 0.96699 * 113.99669 * 299.99736 * 19 18 17 35 35 H 1.48501 * 110.00219 * 180.02562 * 20 18 17 36 36 H 1.48500 * 110.00190 * 301.32164 * 20 18 17 37 37 H 1.07991 * 120.75678 * 180.02562 * 21 17 16 38 38 H 1.09005 * 113.61471 * 139.98321 * 24 11 10 39 39 H 1.08996 * 113.61178 * 270.79663 * 24 11 10 40 40 H 1.08001 * 120.07915 * 180.23420 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2688 1.1619 -0.3312 5 6 4.6484 1.1554 -0.3297 6 6 5.3374 0.0031 0.0041 7 6 4.6492 -1.1529 0.3283 8 6 5.4085 -2.4046 0.6855 9 1 4.7717 -3.1803 1.1108 10 6 6.3272 -2.9101 -0.4395 11 6 7.3600 -3.2336 0.6530 12 1 8.3852 -2.9970 0.3683 13 7 7.2211 -4.5809 1.2114 14 6 8.3195 -5.2121 1.7868 15 7 9.4869 -4.5901 1.8272 16 6 10.5533 -5.1529 2.3643 17 6 10.4886 -6.4200 2.9068 18 6 11.7144 -7.0503 3.5161 19 8 11.4650 -7.3435 4.8923 20 14 13.1507 -5.8715 3.3822 21 6 9.2826 -7.1088 2.8855 22 6 8.1795 -6.4915 2.3208 23 9 6.9855 -7.1226 2.2837 24 6 6.6883 -2.1409 1.5013 25 6 3.2700 -1.1604 0.3309 26 1 2.7320 2.0633 -0.5877 27 1 5.1916 2.0528 -0.5861 28 1 6.4174 0.0046 0.0078 29 1 6.6485 -2.1267 -1.1259 30 1 5.9440 -3.7919 -0.9531 31 1 6.3634 -5.0329 1.1798 32 1 11.4895 -4.6145 2.3787 33 1 11.9508 -7.9725 2.9853 34 1 11.2476 -6.5675 5.4267 35 1 14.3659 -6.4816 3.9791 36 1 13.3998 -5.5342 1.9576 37 1 9.2061 -8.1015 3.3039 38 1 6.5958 -2.4019 2.5556 39 1 7.1094 -1.1475 1.3466 40 1 2.7341 -2.0622 0.5877 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_15356834_17656566.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:54:38 Heat of formation + Delta-G solvation = 59.130376 kcal Electronic energy + Delta-G solvation = -25618.731420 eV Core-core repulsion = 21701.886386 eV Total energy + Delta-G solvation = -3916.845034 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 326.117 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -49.94574 -41.60114 -41.01337 -39.48307 -37.91127 -37.46994 -35.42425 -33.19892 -32.31439 -32.22875 -30.84142 -26.82620 -26.59563 -25.99655 -25.08149 -24.44362 -22.96386 -22.71894 -20.68786 -19.46084 -19.05466 -18.36482 -18.13388 -17.48570 -17.28266 -16.99039 -16.72263 -16.18093 -16.08432 -15.97934 -15.66247 -15.36582 -15.21724 -15.02705 -14.70914 -14.49731 -14.32365 -14.17181 -14.04716 -13.93437 -13.77600 -13.46702 -13.37145 -13.03882 -12.69885 -12.55759 -12.45571 -12.10273 -11.86199 -11.70611 -11.18692 -11.08248 -10.68014 -10.62054 -10.38995 -9.90648 -9.65656 -8.73017 -4.94240 -0.18702 -0.06378 0.12192 0.38408 1.34847 1.54872 1.68817 1.90438 1.98374 2.03329 2.56205 2.82477 2.86257 3.04568 3.28912 3.51463 3.57437 3.68829 3.74898 3.81401 3.88482 3.94562 4.01433 4.05538 4.20661 4.22751 4.33697 4.46287 4.49841 4.54531 4.73153 4.76080 4.82008 4.88681 4.93878 5.00761 5.04295 5.09563 5.15005 5.24002 5.36080 5.44256 5.49208 5.64084 5.91226 6.06178 6.21774 6.38379 6.81312 6.97772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.475 5.475 2 C 0.276 3.724 3 C -0.047 4.047 4 C -0.076 4.076 5 C -0.115 4.115 6 C -0.080 4.080 7 C -0.073 4.073 8 C -0.072 4.072 9 H 0.098 0.902 10 C -0.130 4.130 11 C 0.129 3.871 12 H 0.105 0.895 13 N -0.698 5.698 14 C 0.386 3.614 15 N -0.521 5.521 16 C 0.149 3.851 17 C -0.207 4.207 18 C -0.061 4.061 19 O -0.557 6.557 20 Si 0.777 3.223 21 C -0.042 4.042 22 C -0.040 4.040 23 F -0.142 7.142 24 C -0.137 4.137 25 C -0.073 4.073 26 H 0.140 0.860 27 H 0.158 0.842 28 H 0.155 0.845 29 H 0.112 0.888 30 H 0.074 0.926 31 H 0.415 0.585 32 H 0.185 0.815 33 H 0.110 0.890 34 H 0.396 0.604 35 H -0.300 1.300 36 H -0.277 1.277 37 H 0.151 0.849 38 H 0.063 0.937 39 H 0.111 0.889 40 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.034 3.820 0.139 8.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.151 5.151 2 C -0.039 4.039 3 C -0.050 4.050 4 C -0.097 4.097 5 C -0.133 4.133 6 C -0.098 4.098 7 C -0.074 4.074 8 C -0.090 4.090 9 H 0.116 0.884 10 C -0.168 4.168 11 C 0.024 3.976 12 H 0.123 0.877 13 N -0.330 5.330 14 C 0.147 3.853 15 N -0.238 5.238 16 C -0.009 4.009 17 C -0.212 4.212 18 C -0.171 4.171 19 O -0.365 6.365 20 Si 0.682 3.318 21 C -0.068 4.068 22 C -0.066 4.066 23 F -0.121 7.121 24 C -0.176 4.176 25 C -0.093 4.093 26 H 0.158 0.842 27 H 0.176 0.824 28 H 0.173 0.827 29 H 0.131 0.869 30 H 0.092 0.908 31 H 0.253 0.747 32 H 0.201 0.799 33 H 0.127 0.873 34 H 0.246 0.754 35 H -0.228 1.228 36 H -0.204 1.204 37 H 0.169 0.831 38 H 0.082 0.918 39 H 0.129 0.871 40 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 6.193 4.351 -0.818 7.613 hybrid contribution -1.111 -1.973 0.148 2.270 sum 5.082 2.378 -0.670 5.651 Atomic orbital electron populations 1.81317 1.13804 1.09070 1.10861 1.26204 0.93149 0.92300 0.92198 1.16104 0.82829 0.97192 1.08902 1.21425 0.95321 0.96446 0.96488 1.21413 0.92994 0.99782 0.99087 1.21616 1.01838 0.91455 0.94927 1.19687 0.92225 0.95968 0.99477 1.21638 0.95052 0.94501 0.97851 0.88415 1.23457 0.95023 1.02237 0.96096 1.21883 1.00703 0.80700 0.94340 0.87692 1.44332 1.09017 1.17296 1.62338 1.18519 0.88822 0.87152 0.90757 1.67344 0.97980 1.36131 1.22325 1.22714 0.96243 0.91333 0.90565 1.20987 0.96624 0.96799 1.06791 1.25016 1.01328 1.06569 0.84194 1.86478 1.92702 1.39117 1.18192 0.93792 0.73809 0.83533 0.80617 1.21415 0.90519 1.00685 0.94212 1.18159 0.83298 0.93462 1.11687 1.91464 1.43413 1.81863 1.95391 1.23641 0.94782 1.00202 0.98977 1.21189 0.94350 0.96580 0.97190 0.84186 0.82415 0.82733 0.86942 0.90779 0.74748 0.79886 0.87307 0.75409 1.22754 1.20363 0.83134 0.91846 0.87055 0.84873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -5.72 18.54 19.00 0.35 -5.37 16 2 C 0.28 1.55 15.33 88.33 1.35 2.91 16 3 C -0.05 0.04 5.73 -21.36 -0.12 -0.08 16 4 C -0.08 0.34 9.76 22.54 0.22 0.56 16 5 C -0.12 0.93 10.03 22.23 0.22 1.16 16 6 C -0.08 0.70 8.62 22.33 0.19 0.89 16 7 C -0.07 0.47 5.29 -19.91 -0.11 0.36 16 8 C -0.07 0.56 3.87 -10.92 -0.04 0.52 16 9 H 0.10 -0.73 8.09 -2.39 -0.02 -0.75 16 10 C -0.13 1.09 7.28 31.12 0.23 1.32 16 11 C 0.13 -0.76 4.35 45.52 0.20 -0.56 16 12 H 0.11 -0.46 7.41 -2.39 -0.02 -0.48 16 13 N -0.70 1.83 5.42 -321.78 -1.74 0.09 16 14 C 0.39 0.42 7.49 133.09 1.00 1.41 16 15 N -0.52 -0.23 9.13 -193.04 -1.76 -2.00 16 16 C 0.15 -0.40 9.84 84.61 0.83 0.43 16 17 C -0.21 0.46 5.40 -19.76 -0.11 0.35 16 18 C -0.06 0.22 2.83 71.24 0.20 0.42 16 19 O -0.56 1.32 12.78 -148.98 -1.90 -0.58 16 20 Si 0.78 -4.38 29.82 68.60 2.05 -2.33 16 21 C -0.04 -0.02 9.75 22.48 0.22 0.20 16 22 C -0.04 -0.09 7.35 22.59 0.17 0.07 16 23 F -0.14 -0.59 16.65 44.97 0.75 0.16 16 24 C -0.14 1.04 7.26 31.21 0.23 1.27 16 25 C -0.07 0.24 9.41 22.54 0.21 0.45 16 26 H 0.14 -0.91 8.06 -2.91 -0.02 -0.93 16 27 H 0.16 -2.00 8.06 -2.91 -0.02 -2.02 16 28 H 0.16 -2.05 6.63 -2.91 -0.02 -2.07 16 29 H 0.11 -1.18 7.73 -2.39 -0.02 -1.19 16 30 H 0.07 -0.54 8.14 -2.39 -0.02 -0.56 16 31 H 0.41 -1.65 8.18 -92.71 -0.76 -2.41 16 32 H 0.18 -1.46 4.88 -2.91 -0.01 -1.48 16 33 H 0.11 -0.26 7.96 -2.38 -0.02 -0.28 16 34 H 0.40 -4.10 8.70 -74.06 -0.64 -4.74 16 35 H -0.30 -0.76 7.11 99.48 0.71 -0.05 16 36 H -0.28 0.46 7.11 99.48 0.71 1.17 16 37 H 0.15 -0.08 8.06 -2.92 -0.02 -0.10 16 38 H 0.06 -0.28 8.14 -2.38 -0.02 -0.30 16 39 H 0.11 -1.16 6.31 -2.39 -0.02 -1.18 16 40 H 0.13 -0.58 8.05 -2.91 -0.02 -0.61 16 Total: 0.00 -18.71 350.52 2.39 -16.32 By element: Atomic # 1 Polarization: -17.73 SS G_CDS: -0.24 Total: -17.97 kcal Atomic # 6 Polarization: 6.78 SS G_CDS: 4.89 Total: 11.68 kcal Atomic # 7 Polarization: -4.12 SS G_CDS: -3.15 Total: -7.27 kcal Atomic # 8 Polarization: 1.32 SS G_CDS: -1.90 Total: -0.58 kcal Atomic # 9 Polarization: -0.59 SS G_CDS: 0.75 Total: 0.16 kcal Atomic # 14 Polarization: -4.38 SS G_CDS: 2.05 Total: -2.33 kcal Total: -18.71 2.39 -16.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_15356834_17656566.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.452 kcal (2) G-P(sol) polarization free energy of solvation -18.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.322 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds