Wall clock time and date at job start Mon Mar 8 2021 06:23:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42907 * 1 3 3 Si 1.86293 * 109.46890 * 2 1 4 4 C 1.50702 * 109.46971 * 240.00073 * 2 1 3 5 5 C 1.38609 * 120.71961 * 299.99707 * 4 2 1 6 6 N 1.32279 * 119.19420 * 179.97438 * 5 4 2 7 7 C 1.32490 * 120.74029 * 0.02562 * 6 5 4 8 8 N 1.38408 * 119.21405 * 179.97438 * 7 6 5 9 9 C 1.46499 * 119.99788 * 179.72008 * 8 7 6 10 10 H 1.09002 * 112.85201 * 24.07926 * 9 8 7 11 11 C 1.53784 * 113.61491 * 155.27847 * 9 8 7 12 12 C 1.53783 * 87.08338 * 139.98310 * 11 9 8 13 13 H 1.09004 * 113.61283 * 220.02107 * 12 11 9 14 14 N 1.46498 * 113.61829 * 89.19725 * 12 11 9 15 15 C 1.34941 * 126.04009 * 275.00335 * 14 12 11 16 16 C 1.35315 * 107.74866 * 179.97438 * 15 14 12 17 17 C 1.39874 * 107.91693 * 359.97438 * 16 15 14 18 18 N 1.30833 * 108.20358 * 359.74256 * 17 16 15 19 19 C 1.53780 * 87.07825 * 334.56565 * 12 11 9 20 20 N 1.32496 * 121.56933 * 0.26944 * 7 6 5 21 21 C 1.32280 * 120.73454 * 359.44648 * 20 7 6 22 22 H 0.96697 * 113.99914 * 60.00106 * 1 2 3 23 23 H 1.08997 * 109.46869 * 119.99771 * 2 1 3 24 24 H 1.48497 * 110.00269 * 59.99869 * 3 2 1 25 25 H 1.48499 * 110.00211 * 181.31986 * 3 2 1 26 26 H 1.08000 * 120.40170 * 0.02562 * 5 4 2 27 27 H 0.97001 * 120.00363 * 0.02562 * 8 7 6 28 28 H 1.09000 * 113.61044 * 254.52540 * 11 9 8 29 29 H 1.08999 * 113.61555 * 25.34324 * 11 9 8 30 30 H 1.08003 * 126.12354 * 359.95351 * 15 14 12 31 31 H 1.08003 * 126.03886 * 180.02562 * 16 15 14 32 32 H 1.08001 * 125.89161 * 180.02562 * 17 16 15 33 33 H 1.08998 * 113.61772 * 270.88604 * 19 12 11 34 34 H 1.09001 * 113.61751 * 139.98662 * 19 12 11 35 35 H 1.08003 * 120.39866 * 180.29440 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9314 -0.7104 -1.2305 5 6 1.6057 -2.0372 -1.4646 6 7 2.0626 -2.6310 -2.5547 7 6 2.8232 -1.9722 -3.4166 8 7 3.2845 -2.6247 -4.5467 9 6 4.1216 -1.9109 -5.5142 10 1 4.6487 -1.0642 -5.0744 11 6 5.0265 -2.8352 -6.3460 12 6 4.6996 -1.9393 -7.5524 13 1 4.5433 -2.4933 -8.4780 14 7 5.6210 -0.8117 -7.7129 15 6 5.5280 0.3839 -7.0942 16 6 6.5670 1.1450 -7.5093 17 6 7.3211 0.3883 -8.4122 18 7 6.7583 -0.7868 -8.5306 19 6 3.3946 -1.5723 -6.8263 20 7 3.1575 -0.7054 -3.2195 21 6 2.7293 -0.0513 -2.1524 22 1 -0.3933 0.4417 -0.7650 23 1 1.7923 -0.5138 0.8900 24 1 1.5614 2.4679 1.2084 25 1 3.5346 1.7704 -0.0321 26 1 0.9857 -2.5793 -0.7659 27 1 3.0499 -3.5533 -4.7004 28 1 6.0748 -2.8023 -6.0492 29 1 4.6446 -3.8518 -6.4390 30 1 4.7615 0.6803 -6.3935 31 1 6.7773 2.1575 -7.1977 32 1 8.2161 0.7160 -8.9201 33 1 2.5658 -2.2433 -7.0519 34 1 3.1253 -0.5200 -6.9173 35 1 3.0012 0.9827 -1.9996 There are 49 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 49 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_15494094_12175864.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:23:08 Heat of formation + Delta-G solvation = 151.498027 kcal Electronic energy + Delta-G solvation = -20439.672197 eV Core-core repulsion = 17250.113100 eV Total energy + Delta-G solvation = -3189.559097 eV No. of doubly occupied orbitals = 49 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 274.117 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.47473 -42.04415 -39.97531 -37.99277 -35.76500 -34.74976 -32.65535 -31.44896 -30.94467 -27.10919 -26.95450 -26.02177 -25.26823 -23.24568 -22.47189 -21.82789 -20.54613 -19.36446 -18.91834 -18.06114 -17.87841 -16.92253 -16.60835 -16.14058 -16.00264 -15.80327 -15.48650 -15.35432 -15.22047 -14.60096 -14.24773 -14.05776 -13.85044 -13.61053 -13.36127 -13.27341 -12.97050 -12.32802 -12.23082 -11.92776 -11.79638 -11.77772 -11.56277 -11.28486 -10.55775 -10.37899 -10.05482 -9.52928 -9.14412 -4.99202 0.02706 0.11317 0.93456 1.32513 1.50632 1.64070 1.77658 1.94146 1.99864 2.75062 3.06631 3.14657 3.31943 3.53395 3.57545 3.64937 3.70074 3.77578 3.89480 3.92272 4.07166 4.24515 4.35032 4.49998 4.55687 4.55862 4.68208 4.72621 4.77329 4.80438 4.91823 4.95241 5.15787 5.26560 5.71566 5.75169 5.99404 6.14594 6.36470 6.75846 6.79305 7.23525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.554 6.554 2 C -0.048 4.048 3 Si 0.769 3.231 4 C -0.285 4.285 5 C 0.212 3.788 6 N -0.589 5.589 7 C 0.552 3.448 8 N -0.679 5.679 9 C 0.141 3.859 10 H 0.111 0.889 11 C -0.147 4.147 12 C 0.130 3.870 13 H 0.121 0.879 14 N -0.363 5.363 15 C 0.054 3.946 16 C -0.286 4.286 17 C 0.035 3.965 18 N -0.337 5.337 19 C -0.141 4.141 20 N -0.575 5.575 21 C 0.194 3.806 22 H 0.395 0.605 23 H 0.113 0.887 24 H -0.297 1.297 25 H -0.282 1.282 26 H 0.181 0.819 27 H 0.421 0.579 28 H 0.067 0.933 29 H 0.127 0.873 30 H 0.195 0.805 31 H 0.165 0.835 32 H 0.201 0.799 33 H 0.125 0.875 34 H 0.087 0.913 35 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.779 2.226 -0.497 3.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.362 6.362 2 C -0.159 4.159 3 Si 0.675 3.325 4 C -0.294 4.294 5 C 0.045 3.955 6 N -0.311 5.311 7 C 0.195 3.805 8 N -0.315 5.315 9 C 0.035 3.965 10 H 0.129 0.871 11 C -0.187 4.187 12 C 0.028 3.972 13 H 0.139 0.861 14 N -0.146 5.146 15 C -0.092 4.092 16 C -0.315 4.315 17 C -0.150 4.150 18 N -0.158 5.158 19 C -0.181 4.181 20 N -0.297 5.297 21 C 0.027 3.973 22 H 0.245 0.755 23 H 0.130 0.870 24 H -0.225 1.225 25 H -0.209 1.209 26 H 0.198 0.802 27 H 0.260 0.740 28 H 0.086 0.914 29 H 0.145 0.855 30 H 0.212 0.788 31 H 0.183 0.817 32 H 0.218 0.782 33 H 0.143 0.857 34 H 0.106 0.894 35 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -1.784 0.839 -1.055 2.236 hybrid contribution -0.117 0.185 1.351 1.368 sum -1.901 1.023 0.296 2.179 Atomic orbital electron populations 1.86482 1.17144 1.82060 1.50503 1.24803 0.85189 1.10122 0.95824 0.93964 0.77869 0.75099 0.85564 1.21775 1.07474 0.98034 1.02077 1.23125 0.90369 0.91265 0.90764 1.68004 1.16830 1.39898 1.06365 1.19672 0.87208 0.86125 0.87503 1.44162 1.53558 1.14644 1.19150 1.22623 0.91158 0.96032 0.86698 0.87131 1.23845 1.00652 1.00317 0.93842 1.21998 0.88818 0.86221 1.00213 0.86142 1.48571 1.20517 1.11667 1.33832 1.22977 1.01044 0.86159 0.98983 1.21881 0.99365 1.03658 1.06605 1.24390 1.00918 0.91029 0.98700 1.77328 0.99269 1.22733 1.16511 1.23927 0.95885 1.04648 0.93670 1.67928 1.28553 1.08584 1.24648 1.23194 0.88091 0.99708 0.86305 0.75497 0.87011 1.22482 1.20916 0.80209 0.73970 0.91438 0.85502 0.78771 0.81748 0.78224 0.85699 0.89430 0.79510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 1.85 12.79 -148.98 -1.91 -0.05 16 2 C -0.05 0.19 2.85 71.24 0.20 0.40 16 3 Si 0.77 -4.11 29.87 68.60 2.05 -2.06 16 4 C -0.29 0.58 5.40 -19.69 -0.11 0.48 16 5 C 0.21 0.15 10.92 84.71 0.93 1.08 16 6 N -0.59 -2.37 10.46 -197.98 -2.07 -4.44 16 7 C 0.55 1.62 8.42 261.49 2.20 3.82 16 8 N -0.68 1.13 5.50 -327.92 -1.80 -0.67 16 9 C 0.14 -0.49 3.83 45.52 0.17 -0.32 16 10 H 0.11 -0.06 6.21 -2.39 -0.01 -0.07 16 11 C -0.15 0.59 7.63 31.12 0.24 0.83 16 12 C 0.13 -0.32 5.18 45.52 0.24 -0.09 16 13 H 0.12 -0.39 8.14 -2.38 -0.02 -0.41 16 14 N -0.36 -1.17 3.79 -324.99 -1.23 -2.41 16 15 C 0.05 0.05 9.63 83.54 0.80 0.85 16 16 C -0.29 -0.55 10.80 21.99 0.24 -0.31 16 17 C 0.03 0.16 12.03 85.24 1.03 1.18 16 18 N -0.34 -2.82 12.58 -57.02 -0.72 -3.54 16 19 C -0.14 0.85 7.13 31.12 0.22 1.07 16 20 N -0.57 -1.11 9.13 -197.98 -1.81 -2.92 16 21 C 0.19 -0.35 9.92 84.71 0.84 0.49 16 22 H 0.40 -4.33 8.70 -74.06 -0.64 -4.98 16 23 H 0.11 -0.36 7.96 -2.39 -0.02 -0.38 16 24 H -0.30 -0.79 7.11 99.48 0.71 -0.08 16 25 H -0.28 0.20 7.11 99.48 0.71 0.91 16 26 H 0.18 -0.43 8.06 -2.91 -0.02 -0.46 16 27 H 0.42 -1.76 8.84 -92.71 -0.82 -2.58 16 28 H 0.07 0.02 8.14 -2.39 -0.02 0.00 16 29 H 0.13 -1.04 8.12 -2.39 -0.02 -1.06 16 30 H 0.20 -0.88 6.67 -2.91 -0.02 -0.90 16 31 H 0.16 -0.39 8.06 -2.91 -0.02 -0.42 16 32 H 0.20 -0.20 8.06 -2.91 -0.02 -0.23 16 33 H 0.12 -1.08 8.14 -2.39 -0.02 -1.10 16 34 H 0.09 -0.49 6.98 -2.39 -0.02 -0.51 16 35 H 0.19 -1.36 5.04 -2.91 -0.01 -1.38 16 Total: 0.00 -19.48 299.19 -0.77 -20.25 By element: Atomic # 1 Polarization: -13.36 SS G_CDS: -0.28 Total: -13.64 kcal Atomic # 6 Polarization: 2.48 SS G_CDS: 7.00 Total: 9.48 kcal Atomic # 7 Polarization: -6.34 SS G_CDS: -7.63 Total: -13.97 kcal Atomic # 8 Polarization: 1.85 SS G_CDS: -1.91 Total: -0.05 kcal Atomic # 14 Polarization: -4.11 SS G_CDS: 2.05 Total: -2.06 kcal Total: -19.48 -0.77 -20.25 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_15494094_12175864.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.745 kcal (2) G-P(sol) polarization free energy of solvation -19.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 152.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.247 kcal (6) G-S(sol) free energy of system = (1) + (5) 151.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds