Wall clock time and date at job start Mon Mar 8 2021 06:23:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42907 * 1 3 3 Si 1.86297 * 109.46813 * 2 1 4 4 C 1.50700 * 109.46978 * 119.99306 * 2 1 3 5 5 C 1.38021 * 120.33839 * 244.98082 * 4 2 1 6 6 N 1.31975 * 120.85607 * 180.02562 * 5 4 2 7 7 C 1.32393 * 121.62238 * 359.97438 * 6 5 4 8 8 N 1.39001 * 119.70339 * 179.97438 * 7 6 5 9 9 C 1.46501 * 119.99927 * 180.02562 * 8 7 6 10 10 H 1.09000 * 112.84965 * 334.67190 * 9 8 7 11 11 C 1.53787 * 113.61311 * 105.86532 * 9 8 7 12 12 C 1.54061 * 86.98430 * 89.16365 * 11 9 8 13 13 H 1.09001 * 113.68534 * 270.87937 * 12 11 9 14 14 N 1.46496 * 113.62064 * 139.97966 * 12 11 9 15 15 C 1.34950 * 126.03693 * 347.50177 * 14 12 11 16 16 C 1.35311 * 107.74569 * 179.97438 * 15 14 12 17 17 C 1.39871 * 107.92327 * 0.02562 * 16 15 14 18 18 N 1.30838 * 108.19727 * 359.73351 * 17 16 15 19 19 C 1.53785 * 87.07740 * 25.42923 * 12 11 9 20 20 C 1.39141 * 120.58896 * 0.02562 * 7 6 5 21 21 C 1.38298 * 119.09793 * 359.97438 * 20 7 6 22 22 H 0.96693 * 114.00517 * 299.99865 * 1 2 3 23 23 H 1.08990 * 109.47538 * 240.00012 * 2 1 3 24 24 H 1.48494 * 110.00269 * 178.67718 * 3 2 1 25 25 H 1.48502 * 110.00056 * 300.00011 * 3 2 1 26 26 H 1.07999 * 119.57054 * 0.04501 * 5 4 2 27 27 H 0.97000 * 120.00503 * 0.02562 * 8 7 6 28 28 H 1.09000 * 113.61125 * 203.66349 * 11 9 8 29 29 H 1.08995 * 113.61200 * 334.57320 * 11 9 8 30 30 H 1.08002 * 126.12778 * 359.96376 * 15 14 12 31 31 H 1.07998 * 126.03948 * 179.97438 * 16 15 14 32 32 H 1.07997 * 125.90047 * 180.02562 * 17 16 15 33 33 H 1.08989 * 113.61661 * 220.02284 * 19 12 11 34 34 H 1.09002 * 113.68556 * 89.13036 * 19 12 11 35 35 H 1.08004 * 120.44656 * 179.97438 * 20 7 6 36 36 H 1.07994 * 120.74333 * 180.28293 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7103 1.2306 5 6 2.6387 -0.0200 2.1940 6 7 3.0838 -0.6319 3.2753 7 6 2.8715 -1.9227 3.4795 8 7 3.3589 -2.5269 4.6325 9 6 3.1283 -3.9549 4.8647 10 1 2.2446 -4.3303 4.3488 11 6 4.3800 -4.8233 4.6541 12 6 4.7002 -4.5788 6.1411 13 1 5.3016 -3.6871 6.3186 14 7 5.2190 -5.7618 6.8320 15 6 5.2032 -7.0266 6.3616 16 6 5.7742 -7.8213 7.2961 17 6 6.1514 -7.0148 8.3748 18 7 5.8239 -5.7793 8.0953 19 6 3.1927 -4.3561 6.3479 20 6 2.1659 -2.6800 2.5496 21 6 1.6871 -2.0661 1.4066 22 1 -0.3934 0.4416 0.7650 23 1 1.7924 -0.5138 -0.8899 24 1 3.5345 1.7704 0.0322 25 1 1.5614 2.4679 -1.2085 26 1 2.8302 1.0345 2.0614 27 1 3.8517 -2.0031 5.2834 28 1 4.1551 -5.8641 4.4213 29 1 5.1068 -4.3832 3.9714 30 1 4.8058 -7.3471 5.4099 31 1 5.9133 -8.8898 7.2224 32 1 6.6342 -7.3528 9.2798 33 1 2.9617 -3.5393 7.0316 34 1 2.6427 -5.2688 6.5776 35 1 1.9945 -3.7329 2.7183 36 1 1.1323 -2.6275 0.6696 There are 49 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 49 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_15494094_13915762.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:23:10 Heat of formation + Delta-G solvation = 133.688189 kcal Electronic energy + Delta-G solvation = -19952.061399 eV Core-core repulsion = 16827.155921 eV Total energy + Delta-G solvation = -3124.905479 eV No. of doubly occupied orbitals = 49 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.33223 -41.45558 -40.03220 -37.85360 -35.45783 -33.45604 -32.38000 -31.02239 -30.82172 -26.98315 -26.75208 -25.64297 -24.71109 -22.95494 -21.98663 -21.97075 -20.15073 -19.20357 -18.43072 -18.14978 -17.44831 -16.61611 -16.52039 -16.04427 -15.94013 -15.71913 -15.39386 -15.21559 -14.85930 -14.42685 -14.25568 -14.05068 -13.94877 -13.57138 -13.38883 -13.35644 -12.93781 -12.39413 -12.21776 -12.10261 -11.83325 -11.48713 -11.17956 -10.76699 -10.43950 -10.38545 -10.37808 -9.52345 -8.75997 -4.99579 0.21183 0.39215 0.94837 1.33907 1.58456 1.63614 1.92840 1.96533 1.97707 2.79765 3.06032 3.31920 3.52231 3.57792 3.62697 3.73967 3.79211 3.92728 3.98537 4.06385 4.07902 4.30491 4.38471 4.49000 4.54352 4.55376 4.68492 4.75000 4.77868 4.80081 4.88541 4.96879 5.01512 5.14033 5.31880 5.51319 5.72927 5.98452 6.15104 6.45776 6.76026 6.80197 7.11332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.556 6.556 2 C -0.052 4.052 3 Si 0.761 3.239 4 C -0.235 4.235 5 C 0.146 3.854 6 N -0.565 5.565 7 C 0.397 3.603 8 N -0.706 5.706 9 C 0.144 3.856 10 H 0.128 0.872 11 C -0.148 4.148 12 C 0.125 3.875 13 H 0.109 0.891 14 N -0.368 5.368 15 C 0.055 3.945 16 C -0.290 4.290 17 C 0.031 3.969 18 N -0.346 5.346 19 C -0.143 4.143 20 C -0.236 4.236 21 C -0.013 4.013 22 H 0.394 0.606 23 H 0.108 0.892 24 H -0.289 1.289 25 H -0.297 1.297 26 H 0.167 0.833 27 H 0.406 0.594 28 H 0.125 0.875 29 H 0.083 0.917 30 H 0.207 0.793 31 H 0.164 0.836 32 H 0.197 0.803 33 H 0.082 0.918 34 H 0.110 0.890 35 H 0.157 0.843 36 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.902 -2.764 -0.691 4.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.364 6.364 2 C -0.163 4.163 3 Si 0.668 3.332 4 C -0.240 4.240 5 C -0.011 4.011 6 N -0.282 5.282 7 C 0.161 3.839 8 N -0.338 5.338 9 C 0.037 3.963 10 H 0.146 0.854 11 C -0.188 4.188 12 C 0.024 3.976 13 H 0.127 0.873 14 N -0.150 5.150 15 C -0.091 4.091 16 C -0.319 4.319 17 C -0.154 4.154 18 N -0.168 5.168 19 C -0.182 4.182 20 C -0.261 4.261 21 C -0.039 4.039 22 H 0.244 0.756 23 H 0.126 0.874 24 H -0.216 1.216 25 H -0.225 1.225 26 H 0.184 0.816 27 H 0.243 0.757 28 H 0.143 0.857 29 H 0.102 0.898 30 H 0.223 0.777 31 H 0.182 0.818 32 H 0.214 0.786 33 H 0.101 0.899 34 H 0.129 0.871 35 H 0.174 0.826 36 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -1.965 -0.871 -0.657 2.248 hybrid contribution 0.241 -1.505 -0.590 1.635 sum -1.725 -2.376 -1.247 3.190 Atomic orbital electron populations 1.86459 1.17336 1.82088 1.50491 1.24800 0.85075 1.09854 0.96611 0.93921 0.77919 0.76090 0.85255 1.21058 1.06624 0.96377 0.99941 1.22426 0.91601 0.99468 0.87603 1.67109 1.26624 1.09981 1.24521 1.18570 0.89580 0.88392 0.87323 1.44248 1.60220 1.08644 1.20676 1.21662 0.98778 0.79437 0.96426 0.85393 1.24081 0.98780 1.03185 0.92790 1.23225 0.95091 0.86396 0.92933 0.87275 1.48923 1.45680 1.07161 1.13210 1.23068 1.00553 0.84120 1.01401 1.21896 1.12063 1.02156 0.95797 1.24365 0.99683 0.90330 1.01031 1.77318 1.18376 1.22665 0.98439 1.23801 0.94110 1.03657 0.96667 1.21719 1.05716 1.02459 0.96162 1.21436 0.93152 0.93477 0.95818 0.75600 0.87426 1.21620 1.22529 0.81621 0.75746 0.85703 0.89797 0.77656 0.81832 0.78610 0.89925 0.87123 0.82551 0.83523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 0.56 12.84 -148.98 -1.91 -1.35 16 2 C -0.05 0.08 2.82 71.24 0.20 0.28 16 3 Si 0.76 -1.59 29.83 68.60 2.05 0.45 16 4 C -0.23 0.12 5.36 -19.76 -0.11 0.01 16 5 C 0.15 0.15 9.84 84.62 0.83 0.98 16 6 N -0.57 -2.23 10.39 -193.27 -2.01 -4.24 16 7 C 0.40 0.24 7.65 133.07 1.02 1.25 16 8 N -0.71 2.46 5.44 -322.03 -1.75 0.71 16 9 C 0.14 -1.17 4.07 45.52 0.19 -0.99 16 10 H 0.13 -1.43 6.17 -2.39 -0.01 -1.45 16 11 C -0.15 1.22 7.24 31.22 0.23 1.44 16 12 C 0.13 -0.37 4.93 45.62 0.22 -0.15 16 13 H 0.11 -0.11 8.14 -2.39 -0.02 -0.13 16 14 N -0.37 -0.88 3.81 -324.54 -1.24 -2.12 16 15 C 0.05 -0.07 10.69 83.54 0.89 0.83 16 16 C -0.29 -0.32 10.80 21.99 0.24 -0.08 16 17 C 0.03 0.14 12.03 85.24 1.03 1.17 16 18 N -0.35 -2.98 12.58 -57.02 -0.72 -3.70 16 19 C -0.14 0.88 7.62 31.12 0.24 1.11 16 20 C -0.24 0.55 9.28 22.50 0.21 0.76 16 21 C -0.01 0.02 9.83 22.44 0.22 0.24 16 22 H 0.39 -3.37 8.70 -74.06 -0.64 -4.02 16 23 H 0.11 -0.08 7.96 -2.39 -0.02 -0.10 16 24 H -0.29 -0.97 7.11 99.48 0.71 -0.26 16 25 H -0.30 -1.58 7.11 99.48 0.71 -0.88 16 26 H 0.17 -0.49 4.91 -2.91 -0.01 -0.50 16 27 H 0.41 -1.20 8.83 -92.71 -0.82 -2.02 16 28 H 0.12 -1.53 6.32 -2.39 -0.02 -1.54 16 29 H 0.08 -0.51 8.14 -2.39 -0.02 -0.53 16 30 H 0.21 -1.96 6.69 -2.91 -0.02 -1.98 16 31 H 0.16 -0.52 8.06 -2.91 -0.02 -0.54 16 32 H 0.20 -0.09 8.06 -2.91 -0.02 -0.12 16 33 H 0.08 -0.37 8.14 -2.39 -0.02 -0.39 16 34 H 0.11 -0.74 8.14 -2.39 -0.02 -0.76 16 35 H 0.16 -1.19 6.06 -2.91 -0.02 -1.21 16 36 H 0.15 -0.57 8.06 -2.91 -0.02 -0.60 16 Total: 0.00 -19.94 303.64 -0.47 -20.42 By element: Atomic # 1 Polarization: -16.74 SS G_CDS: -0.30 Total: -17.03 kcal Atomic # 6 Polarization: 1.46 SS G_CDS: 5.40 Total: 6.86 kcal Atomic # 7 Polarization: -3.63 SS G_CDS: -5.71 Total: -9.34 kcal Atomic # 8 Polarization: 0.56 SS G_CDS: -1.91 Total: -1.35 kcal Atomic # 14 Polarization: -1.59 SS G_CDS: 2.05 Total: 0.45 kcal Total: -19.94 -0.47 -20.42 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_15494094_13915762.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.104 kcal (2) G-P(sol) polarization free energy of solvation -19.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 134.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.416 kcal (6) G-S(sol) free energy of system = (1) + (5) 133.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds