Wall clock time and date at job start Mon Mar 8 2021 06:23:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86298 * 109.46997 * 2 1 4 4 C 1.50699 * 109.46830 * 240.00466 * 2 1 3 5 5 C 1.33333 * 125.95429 * 299.72001 * 4 2 1 6 6 N 1.32116 * 114.58004 * 179.79121 * 5 4 2 7 7 C 1.29692 * 116.86675 * 0.50994 * 6 5 4 8 8 N 1.38611 * 124.94815 * 179.72287 * 7 6 5 9 9 C 1.46499 * 120.00018 * 359.97438 * 8 7 6 10 10 H 1.09003 * 112.85058 * 23.81242 * 9 8 7 11 11 C 1.53788 * 113.61307 * 155.00368 * 9 8 7 12 12 C 1.53780 * 87.07931 * 139.98479 * 11 9 8 13 13 H 1.09002 * 113.61280 * 220.01831 * 12 11 9 14 14 N 1.46497 * 113.61896 * 89.11689 * 12 11 9 15 15 C 1.34944 * 126.03559 * 274.71961 * 14 12 11 16 16 C 1.35322 * 107.74661 * 179.83719 * 15 14 12 17 17 C 1.39876 * 107.91657 * 0.41493 * 16 15 14 18 18 N 1.30834 * 108.20075 * 359.74382 * 17 16 15 19 19 C 1.53777 * 113.61787 * 252.50120 * 9 8 7 20 20 S 1.70961 * 110.10073 * 359.71930 * 7 6 5 21 21 H 0.96708 * 114.00246 * 59.99398 * 1 2 3 22 22 H 1.08991 * 109.47274 * 120.00272 * 2 1 3 23 23 H 1.48506 * 109.99834 * 60.00805 * 3 2 1 24 24 H 1.48502 * 110.00011 * 181.32069 * 3 2 1 25 25 H 1.08000 * 122.70597 * 359.95181 * 5 4 2 26 26 H 0.96993 * 120.00128 * 180.02562 * 8 7 6 27 27 H 1.08996 * 113.61091 * 254.52940 * 11 9 8 28 28 H 1.08998 * 113.60937 * 25.35067 * 11 9 8 29 29 H 1.07998 * 126.13350 * 359.97438 * 15 14 12 30 30 H 1.07997 * 126.04387 * 180.15692 * 16 15 14 31 31 H 1.07998 * 125.89758 * 179.75688 * 17 16 15 32 32 H 1.09003 * 113.61340 * 334.56777 * 19 9 8 33 33 H 1.08999 * 113.61886 * 105.47220 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7103 -1.2305 5 6 1.6877 -1.9803 -1.5556 6 7 2.2376 -2.3720 -2.6912 7 6 2.9426 -1.4939 -3.3346 8 7 3.5959 -1.7253 -4.5350 9 6 3.5181 -3.0437 -5.1691 10 1 2.6362 -3.6079 -4.8657 11 6 3.7335 -3.0087 -6.6914 12 6 4.5530 -4.2994 -6.5259 13 1 5.4464 -4.3323 -7.1495 14 7 3.7491 -5.5208 -6.6166 15 6 3.0716 -6.1022 -5.6047 16 6 2.4577 -7.2027 -6.0979 17 6 2.7787 -7.3023 -7.4557 18 7 3.5527 -6.2946 -7.7677 19 6 4.8261 -3.8476 -5.0816 20 16 2.9487 -0.0096 -2.4865 21 1 -0.3934 0.4418 -0.7650 22 1 1.7923 -0.5138 0.8899 23 1 1.5616 2.4678 1.2086 24 1 3.5346 1.7703 -0.0322 25 1 1.0871 -2.6350 -0.9415 26 1 4.1052 -1.0146 -4.9548 27 1 2.8168 -3.1442 -7.2652 28 1 4.3225 -2.1562 -7.0295 29 1 3.0255 -5.7509 -4.5845 30 1 1.8340 -7.8859 -5.5407 31 1 2.4450 -8.0770 -8.1301 32 1 5.7151 -3.2251 -4.9796 33 1 4.7916 -4.6602 -4.3560 There are 47 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 47 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_15494094_15704118.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:23:12 Heat of formation + Delta-G solvation = 140.068069 kcal Electronic energy + Delta-G solvation = -18836.546137 eV Core-core repulsion = 15801.069557 eV Total energy + Delta-G solvation = -3035.476580 eV No. of doubly occupied orbitals = 47 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 279.078 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.43491 -40.87455 -39.87929 -37.89805 -35.64068 -32.11790 -31.12737 -30.89551 -27.20906 -27.04175 -25.98669 -24.36647 -22.74671 -21.91496 -20.80999 -20.71494 -19.61776 -18.40546 -17.96044 -17.28224 -16.90994 -16.47353 -15.96883 -15.86917 -15.50283 -15.37903 -15.32971 -14.91440 -14.25830 -14.04934 -13.99783 -13.65837 -13.41765 -13.32783 -12.90065 -12.39593 -12.37494 -12.07872 -11.89247 -11.53950 -11.26743 -10.83970 -10.31602 -10.30705 -10.21082 -9.49529 -8.84678 -5.16972 -0.10419 -0.03849 0.62936 0.96669 1.22041 1.44908 1.54611 1.87211 1.96358 1.98673 2.02208 2.91908 3.15458 3.39409 3.40239 3.55834 3.73517 3.86742 3.89459 4.01785 4.21017 4.28772 4.39425 4.44250 4.52286 4.62634 4.69155 4.71876 4.76904 4.91352 5.07988 5.16622 5.70146 5.77134 5.92116 6.10381 6.48929 6.81568 6.92197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.536 6.536 2 C -0.011 4.011 3 Si 0.655 3.345 4 C -0.305 4.305 5 C 0.119 3.881 6 N -0.550 5.550 7 C 0.323 3.677 8 N -0.682 5.682 9 C 0.139 3.861 10 H 0.121 0.879 11 C -0.155 4.155 12 C 0.140 3.860 13 H 0.118 0.882 14 N -0.360 5.360 15 C 0.054 3.946 16 C -0.271 4.271 17 C 0.047 3.953 18 N -0.294 5.294 19 C -0.158 4.158 20 S 0.091 5.909 21 H 0.380 0.620 22 H 0.122 0.878 23 H -0.235 1.235 24 H -0.241 1.241 25 H 0.177 0.823 26 H 0.416 0.584 27 H 0.087 0.913 28 H 0.107 0.893 29 H 0.173 0.827 30 H 0.149 0.851 31 H 0.185 0.815 32 H 0.110 0.890 33 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.973 3.098 -0.986 3.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.342 6.342 2 C -0.125 4.125 3 Si 0.555 3.445 4 C -0.428 4.428 5 C -0.032 4.032 6 N -0.275 5.275 7 C -0.047 4.047 8 N -0.321 5.321 9 C 0.032 3.968 10 H 0.139 0.861 11 C -0.195 4.195 12 C 0.036 3.964 13 H 0.135 0.865 14 N -0.142 5.142 15 C -0.092 4.092 16 C -0.301 4.301 17 C -0.140 4.140 18 N -0.115 5.115 19 C -0.199 4.199 20 S 0.341 5.659 21 H 0.228 0.772 22 H 0.139 0.861 23 H -0.158 1.158 24 H -0.165 1.165 25 H 0.194 0.806 26 H 0.254 0.746 27 H 0.105 0.895 28 H 0.125 0.875 29 H 0.191 0.809 30 H 0.167 0.833 31 H 0.202 0.798 32 H 0.128 0.872 33 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 2.652 4.390 -1.374 5.309 hybrid contribution -0.681 -1.379 1.105 1.894 sum 1.972 3.011 -0.269 3.609 Atomic orbital electron populations 1.86518 1.16849 1.81671 1.49150 1.24118 0.84870 1.08897 0.94608 0.94987 0.81969 0.78045 0.89469 1.25613 1.13130 0.99221 1.04802 1.21328 0.97131 0.93066 0.91695 1.66460 1.16976 1.33729 1.10310 1.23767 0.94982 0.93641 0.92336 1.43998 1.54464 1.14164 1.19441 1.22721 0.98834 0.83492 0.91794 0.86076 1.23866 1.02058 0.97478 0.96068 1.21789 0.94107 0.81155 0.99320 0.86463 1.48351 1.38764 1.20387 1.06712 1.22569 0.95977 0.95469 0.95156 1.21575 1.10507 1.02305 0.95682 1.23976 0.96664 0.97160 0.96175 1.77399 1.21336 1.06105 1.06619 1.24004 1.00044 1.00916 0.94918 1.84009 1.51374 1.13551 1.16982 0.77236 0.86104 1.15840 1.16501 0.80628 0.74619 0.89457 0.87470 0.80950 0.83334 0.79837 0.87170 0.89543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 0.08 12.87 -35.23 -0.45 -0.37 16 2 C -0.01 0.01 2.99 36.01 0.11 0.11 16 3 Si 0.66 -0.70 31.05 -169.99 -5.28 -5.98 16 4 C -0.30 -0.03 5.74 -36.02 -0.21 -0.24 16 5 C 0.12 0.14 11.22 -19.14 -0.21 -0.08 16 6 N -0.55 -1.05 9.83 -15.21 -0.15 -1.20 16 7 C 0.32 0.07 8.09 -87.68 -0.71 -0.64 16 8 N -0.68 1.44 5.51 -54.99 -0.30 1.14 16 9 C 0.14 -0.27 3.94 -67.12 -0.26 -0.54 16 10 H 0.12 0.00 6.52 -51.93 -0.34 -0.34 16 11 C -0.16 0.40 7.63 -25.92 -0.20 0.20 16 12 C 0.14 -0.19 5.18 -67.12 -0.35 -0.53 16 13 H 0.12 -0.21 8.14 -51.93 -0.42 -0.63 16 14 N -0.36 -0.57 3.79 -54.07 -0.21 -0.77 16 15 C 0.05 0.05 9.62 -17.22 -0.17 -0.11 16 16 C -0.27 -0.38 10.80 -40.01 -0.43 -0.81 16 17 C 0.05 0.10 12.03 -17.36 -0.21 -0.11 16 18 N -0.29 -1.12 12.57 30.62 0.39 -0.74 16 19 C -0.16 0.42 7.12 -25.92 -0.18 0.24 16 20 S 0.09 -0.07 20.57 -107.50 -2.21 -2.29 16 21 H 0.38 -1.41 8.70 45.56 0.40 -1.02 16 22 H 0.12 -0.05 7.96 -51.93 -0.41 -0.47 16 23 H -0.24 -0.38 7.11 56.52 0.40 0.02 16 24 H -0.24 -0.26 7.11 56.52 0.40 0.14 16 25 H 0.18 0.03 8.06 -52.49 -0.42 -0.39 16 26 H 0.42 -1.84 8.85 -40.82 -0.36 -2.20 16 27 H 0.09 -0.07 8.14 -51.93 -0.42 -0.49 16 28 H 0.11 -0.50 8.12 -51.93 -0.42 -0.92 16 29 H 0.17 -0.18 6.67 -52.49 -0.35 -0.53 16 30 H 0.15 -0.06 8.06 -52.49 -0.42 -0.48 16 31 H 0.18 -0.12 8.06 -52.49 -0.42 -0.54 16 32 H 0.11 -0.44 8.14 -51.93 -0.42 -0.86 16 33 H 0.09 -0.16 6.96 -51.93 -0.36 -0.52 16 LS Contribution 297.17 15.07 4.48 4.48 Total: 0.00 -7.33 297.17 -10.15 -17.47 By element: Atomic # 1 Polarization: -5.65 SS G_CDS: -3.58 Total: -9.23 kcal Atomic # 6 Polarization: 0.32 SS G_CDS: -2.82 Total: -2.51 kcal Atomic # 7 Polarization: -1.30 SS G_CDS: -0.27 Total: -1.57 kcal Atomic # 8 Polarization: 0.08 SS G_CDS: -0.45 Total: -0.37 kcal Atomic # 14 Polarization: -0.70 SS G_CDS: -5.28 Total: -5.98 kcal Atomic # 16 Polarization: -0.07 SS G_CDS: -2.21 Total: -2.29 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -7.33 -10.15 -17.47 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_15494094_15704118.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.540 kcal (2) G-P(sol) polarization free energy of solvation -7.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 150.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.472 kcal (6) G-S(sol) free energy of system = (1) + (5) 140.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds