Wall clock time and date at job start Mon Mar 8 2021 06:23:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86298 * 109.46997 * 2 1 4 4 C 1.50699 * 109.46830 * 240.00466 * 2 1 3 5 5 C 1.33333 * 125.95429 * 299.72001 * 4 2 1 6 6 N 1.32116 * 114.58004 * 179.79121 * 5 4 2 7 7 C 1.29692 * 116.86675 * 0.50994 * 6 5 4 8 8 N 1.38611 * 124.94815 * 179.72287 * 7 6 5 9 9 C 1.46499 * 120.00018 * 359.97438 * 8 7 6 10 10 H 1.09003 * 112.85058 * 23.81242 * 9 8 7 11 11 C 1.53788 * 113.61307 * 155.00368 * 9 8 7 12 12 C 1.53780 * 87.07931 * 139.98479 * 11 9 8 13 13 H 1.09002 * 113.61280 * 220.01831 * 12 11 9 14 14 N 1.46497 * 113.61896 * 89.11689 * 12 11 9 15 15 C 1.34944 * 126.03559 * 274.71961 * 14 12 11 16 16 C 1.35322 * 107.74661 * 179.83719 * 15 14 12 17 17 C 1.39876 * 107.91657 * 0.41493 * 16 15 14 18 18 N 1.30834 * 108.20075 * 359.74382 * 17 16 15 19 19 C 1.53777 * 113.61787 * 252.50120 * 9 8 7 20 20 S 1.70961 * 110.10073 * 359.71930 * 7 6 5 21 21 H 0.96708 * 114.00246 * 59.99398 * 1 2 3 22 22 H 1.08991 * 109.47274 * 120.00272 * 2 1 3 23 23 H 1.48506 * 109.99834 * 60.00805 * 3 2 1 24 24 H 1.48502 * 110.00011 * 181.32069 * 3 2 1 25 25 H 1.08000 * 122.70597 * 359.95181 * 5 4 2 26 26 H 0.96993 * 120.00128 * 180.02562 * 8 7 6 27 27 H 1.08996 * 113.61091 * 254.52940 * 11 9 8 28 28 H 1.08998 * 113.60937 * 25.35067 * 11 9 8 29 29 H 1.07998 * 126.13350 * 359.97438 * 15 14 12 30 30 H 1.07997 * 126.04387 * 180.15692 * 16 15 14 31 31 H 1.07998 * 125.89758 * 179.75688 * 17 16 15 32 32 H 1.09003 * 113.61340 * 334.56777 * 19 9 8 33 33 H 1.08999 * 113.61886 * 105.47220 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7103 -1.2305 5 6 1.6877 -1.9803 -1.5556 6 7 2.2376 -2.3720 -2.6912 7 6 2.9426 -1.4939 -3.3346 8 7 3.5959 -1.7253 -4.5350 9 6 3.5181 -3.0437 -5.1691 10 1 2.6362 -3.6079 -4.8657 11 6 3.7335 -3.0087 -6.6914 12 6 4.5530 -4.2994 -6.5259 13 1 5.4464 -4.3323 -7.1495 14 7 3.7491 -5.5208 -6.6166 15 6 3.0716 -6.1022 -5.6047 16 6 2.4577 -7.2027 -6.0979 17 6 2.7787 -7.3023 -7.4557 18 7 3.5527 -6.2946 -7.7677 19 6 4.8261 -3.8476 -5.0816 20 16 2.9487 -0.0096 -2.4865 21 1 -0.3934 0.4418 -0.7650 22 1 1.7923 -0.5138 0.8899 23 1 1.5616 2.4678 1.2086 24 1 3.5346 1.7703 -0.0322 25 1 1.0871 -2.6350 -0.9415 26 1 4.1052 -1.0146 -4.9548 27 1 2.8168 -3.1442 -7.2652 28 1 4.3225 -2.1562 -7.0295 29 1 3.0255 -5.7509 -4.5845 30 1 1.8340 -7.8859 -5.5407 31 1 2.4450 -8.0770 -8.1301 32 1 5.7151 -3.2251 -4.9796 33 1 4.7916 -4.6602 -4.3560 There are 47 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 47 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_15494094_15704118.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:23:12 Heat of formation + Delta-G solvation = 141.273379 kcal Electronic energy + Delta-G solvation = -18836.493871 eV Core-core repulsion = 15801.069557 eV Total energy + Delta-G solvation = -3035.424314 eV No. of doubly occupied orbitals = 47 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 279.078 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.44813 -40.85203 -39.81498 -37.85453 -35.55917 -32.14235 -31.14506 -30.94061 -27.10364 -26.92493 -25.94281 -24.33499 -22.72696 -21.97327 -20.79212 -20.67703 -19.56020 -18.35479 -17.91351 -17.17362 -16.85633 -16.44300 -15.92455 -15.86306 -15.49811 -15.38024 -15.31004 -14.91243 -14.24975 -14.07680 -13.86409 -13.59530 -13.33255 -13.21636 -12.86233 -12.46159 -12.29768 -12.03101 -11.81299 -11.58958 -11.18141 -10.82081 -10.40356 -10.29100 -10.17195 -9.56477 -8.77332 -5.11249 -0.08079 0.00720 0.65350 0.89296 1.26491 1.48339 1.57162 1.88364 1.89842 1.95576 2.15467 3.05784 3.30099 3.49790 3.55662 3.64084 3.87027 3.88796 3.93915 4.03195 4.32847 4.47235 4.48315 4.55142 4.67078 4.70408 4.74478 4.78831 4.85933 4.89289 5.10470 5.15420 5.70737 5.77971 6.10375 6.13925 6.72042 6.72130 6.98675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.551 6.551 2 C -0.014 4.014 3 Si 0.729 3.271 4 C -0.309 4.309 5 C 0.104 3.896 6 N -0.576 5.576 7 C 0.313 3.687 8 N -0.671 5.671 9 C 0.140 3.860 10 H 0.100 0.900 11 C -0.142 4.142 12 C 0.128 3.872 13 H 0.123 0.877 14 N -0.362 5.362 15 C 0.052 3.948 16 C -0.287 4.287 17 C 0.036 3.964 18 N -0.333 5.333 19 C -0.145 4.145 20 S 0.120 5.880 21 H 0.395 0.605 22 H 0.118 0.882 23 H -0.273 1.273 24 H -0.266 1.266 25 H 0.177 0.823 26 H 0.428 0.572 27 H 0.068 0.932 28 H 0.134 0.866 29 H 0.189 0.811 30 H 0.162 0.838 31 H 0.203 0.797 32 H 0.130 0.870 33 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.514 3.918 -1.186 4.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.358 6.358 2 C -0.127 4.127 3 Si 0.633 3.367 4 C -0.432 4.432 5 C -0.047 4.047 6 N -0.302 5.302 7 C -0.057 4.057 8 N -0.311 5.311 9 C 0.032 3.968 10 H 0.118 0.882 11 C -0.182 4.182 12 C 0.025 3.975 13 H 0.141 0.859 14 N -0.145 5.145 15 C -0.094 4.094 16 C -0.316 4.316 17 C -0.149 4.149 18 N -0.155 5.155 19 C -0.185 4.185 20 S 0.370 5.630 21 H 0.245 0.755 22 H 0.135 0.865 23 H -0.199 1.199 24 H -0.192 1.192 25 H 0.194 0.806 26 H 0.269 0.731 27 H 0.087 0.913 28 H 0.152 0.848 29 H 0.206 0.794 30 H 0.180 0.820 31 H 0.220 0.780 32 H 0.148 0.852 33 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 3.195 5.215 -1.613 6.325 hybrid contribution -0.852 -1.615 1.196 2.183 sum 2.343 3.600 -0.417 4.316 Atomic orbital electron populations 1.86482 1.16978 1.82099 1.50289 1.24221 0.84895 1.09295 0.94328 0.94126 0.79200 0.75925 0.87486 1.25715 1.13135 0.99127 1.05188 1.21425 0.97695 0.93653 0.91930 1.66458 1.18019 1.34798 1.10927 1.23984 0.94875 0.93983 0.92868 1.44013 1.53957 1.14496 1.18668 1.22586 0.98500 0.83505 0.92161 0.88164 1.23835 1.01371 0.97733 0.95220 1.22056 0.94287 0.80712 1.00458 0.85921 1.48586 1.38822 1.20854 1.06225 1.22888 0.95454 0.95289 0.95727 1.21870 1.11078 1.02940 0.95700 1.24389 0.96294 0.97265 0.96958 1.77316 1.22727 1.07257 1.08170 1.23964 1.00288 1.00581 0.93662 1.83842 1.50717 1.12438 1.16047 0.75507 0.86459 1.19901 1.19242 0.80596 0.73146 0.91325 0.84769 0.79429 0.81992 0.78048 0.85191 0.90297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 0.20 12.87 -148.98 -1.92 -1.72 16 2 C -0.01 0.01 2.99 71.24 0.21 0.23 16 3 Si 0.73 -1.63 31.05 68.60 2.13 0.50 16 4 C -0.31 -0.07 5.74 24.58 0.14 0.08 16 5 C 0.10 0.30 11.22 83.54 0.94 1.24 16 6 N -0.58 -2.41 9.83 -202.02 -1.99 -4.39 16 7 C 0.31 0.02 8.09 179.32 1.45 1.47 16 8 N -0.67 3.42 5.51 -327.89 -1.81 1.61 16 9 C 0.14 -0.59 3.94 45.52 0.18 -0.41 16 10 H 0.10 0.07 6.52 -2.39 -0.02 0.05 16 11 C -0.14 0.80 7.63 31.12 0.24 1.04 16 12 C 0.13 -0.36 5.18 45.52 0.24 -0.12 16 13 H 0.12 -0.49 8.14 -2.39 -0.02 -0.51 16 14 N -0.36 -1.38 3.79 -324.99 -1.23 -2.61 16 15 C 0.05 0.13 9.62 83.54 0.80 0.94 16 16 C -0.29 -1.00 10.80 21.99 0.24 -0.76 16 17 C 0.04 0.19 12.03 85.24 1.03 1.21 16 18 N -0.33 -2.89 12.57 -57.02 -0.72 -3.60 16 19 C -0.14 0.87 7.12 31.12 0.22 1.09 16 20 S 0.12 -0.28 20.57 -56.49 -1.16 -1.44 16 21 H 0.39 -3.08 8.70 -74.05 -0.64 -3.73 16 22 H 0.12 -0.06 7.96 -2.39 -0.02 -0.08 16 23 H -0.27 -1.11 7.11 99.48 0.71 -0.40 16 24 H -0.27 -0.54 7.11 99.48 0.71 0.17 16 25 H 0.18 0.26 8.06 -2.91 -0.02 0.24 16 26 H 0.43 -4.48 8.85 -92.71 -0.82 -5.30 16 27 H 0.07 -0.07 8.14 -2.39 -0.02 -0.09 16 28 H 0.13 -1.50 8.12 -2.39 -0.02 -1.52 16 29 H 0.19 -0.29 6.67 -2.91 -0.02 -0.31 16 30 H 0.16 -0.07 8.06 -2.91 -0.02 -0.09 16 31 H 0.20 -0.12 8.06 -2.91 -0.02 -0.14 16 32 H 0.13 -1.28 8.14 -2.39 -0.02 -1.30 16 33 H 0.08 -0.31 6.96 -2.39 -0.02 -0.32 16 Total: 0.00 -17.71 297.17 -1.28 -18.98 By element: Atomic # 1 Polarization: -13.06 SS G_CDS: -0.27 Total: -13.33 kcal Atomic # 6 Polarization: 0.31 SS G_CDS: 5.68 Total: 5.99 kcal Atomic # 7 Polarization: -3.25 SS G_CDS: -5.74 Total: -8.99 kcal Atomic # 8 Polarization: 0.20 SS G_CDS: -1.92 Total: -1.72 kcal Atomic # 14 Polarization: -1.63 SS G_CDS: 2.13 Total: 0.50 kcal Atomic # 16 Polarization: -0.28 SS G_CDS: -1.16 Total: -1.44 kcal Total: -17.71 -1.28 -18.98 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_15494094_15704118.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.258 kcal (2) G-P(sol) polarization free energy of solvation -17.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 142.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.984 kcal (6) G-S(sol) free energy of system = (1) + (5) 141.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds