Wall clock time and date at job start Mon Mar 8 2021 06:23:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.33329 * 125.94840 * 2 1 4 4 C 1.50706 * 122.70991 * 0.02562 * 3 2 1 5 5 O 1.42899 * 109.46923 * 30.00044 * 4 3 2 6 6 Si 1.86298 * 109.46882 * 150.00067 * 4 3 2 7 7 N 1.32116 * 114.57709 * 179.82833 * 3 2 1 8 8 C 1.29690 * 116.86631 * 0.47656 * 7 3 2 9 9 N 1.38615 * 124.94685 * 179.73596 * 8 7 3 10 10 C 1.46499 * 119.99520 * 179.97438 * 9 8 7 11 11 H 1.08996 * 112.84943 * 23.80826 * 10 9 8 12 12 C 1.53787 * 113.61072 * 155.00685 * 10 9 8 13 13 C 1.53779 * 87.08062 * 139.97978 * 12 10 9 14 14 H 1.08994 * 113.61007 * 220.01380 * 13 12 10 15 15 N 1.46503 * 113.61426 * 89.19952 * 13 12 10 16 16 C 1.34944 * 126.03585 * 274.99686 * 15 13 12 17 17 C 1.35316 * 107.74888 * 179.97438 * 16 15 13 18 18 C 1.39871 * 107.91825 * 359.97438 * 17 16 15 19 19 N 1.30844 * 108.20176 * 359.74933 * 18 17 16 20 20 C 1.53778 * 87.08262 * 334.56723 * 13 12 10 21 21 S 1.70964 * 110.10081 * 359.74024 * 8 7 3 22 22 H 1.09001 * 109.46953 * 179.71216 * 1 2 3 23 23 H 1.09000 * 109.47318 * 299.70813 * 1 2 3 24 24 H 1.09000 * 109.47161 * 59.71444 * 1 2 3 25 25 H 1.08993 * 109.47146 * 270.00024 * 4 3 2 26 26 H 0.96706 * 114.00408 * 60.00372 * 5 4 3 27 27 H 1.48502 * 110.00204 * 180.02562 * 6 4 3 28 28 H 1.48505 * 109.99830 * 301.31868 * 6 4 3 29 29 H 0.97002 * 119.99984 * 359.97438 * 9 8 7 30 30 H 1.09004 * 113.60669 * 254.52908 * 12 10 9 31 31 H 1.08999 * 113.61618 * 25.34439 * 12 10 9 32 32 H 1.08004 * 126.13147 * 359.95842 * 16 15 13 33 33 H 1.07999 * 126.04054 * 180.02562 * 17 16 15 34 34 H 1.07999 * 125.90267 * 179.97438 * 18 17 16 35 35 H 1.09002 * 113.60879 * 270.88714 * 20 13 12 36 36 H 1.08998 * 113.61702 * 139.98772 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2898 1.0794 0.0000 4 6 1.7413 2.4831 0.0006 5 8 0.4815 2.5019 0.6747 6 14 2.9325 3.6148 0.8786 7 7 3.5850 0.8189 0.0036 8 6 3.9315 -0.4309 -0.0030 9 7 5.2385 -0.8924 -0.0059 10 6 5.5066 -2.3327 -0.0128 11 1 4.6804 -2.9150 -0.4206 12 6 6.8747 -2.7017 -0.6107 13 6 6.9933 -3.7493 0.5088 14 1 7.9938 -3.8214 0.9350 15 7 6.4311 -5.0545 0.1530 16 6 5.1367 -5.4190 0.2663 17 6 5.0287 -6.6969 -0.1654 18 6 6.3005 -7.1280 -0.5564 19 7 7.1410 -6.1424 -0.3713 20 6 6.0366 -2.8671 1.3282 21 16 2.5413 -1.4260 -0.0077 22 1 -0.3633 -1.0277 -0.0052 23 1 -0.3634 0.5093 0.8926 24 1 -0.3633 0.5183 -0.8874 25 1 1.6087 2.8217 -1.0269 26 1 0.5240 2.2119 1.5962 27 1 2.4029 5.0021 0.8867 28 1 3.1464 3.1453 2.2712 29 1 5.9756 -0.2618 -0.0033 30 1 6.8123 -3.1346 -1.6091 31 1 7.6116 -1.9015 -0.5416 32 1 4.3312 -4.8015 0.6356 33 1 4.1207 -7.2805 -0.2023 34 1 6.5458 -8.1044 -0.9473 35 1 6.5450 -2.1127 1.9286 36 1 5.2979 -3.4336 1.8952 There are 50 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 50 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_15494094_15704122.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:23:14 Heat of formation + Delta-G solvation = 139.681162 kcal Electronic energy + Delta-G solvation = -20846.840929 eV Core-core repulsion = 17655.809953 eV Total energy + Delta-G solvation = -3191.030976 eV No. of doubly occupied orbitals = 50 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.45463 -41.11633 -40.07101 -37.92119 -35.64668 -32.83501 -31.72018 -31.00003 -29.32020 -27.01587 -26.20708 -25.48974 -24.22747 -22.74542 -21.91368 -21.05473 -20.17026 -19.26762 -18.12666 -17.90792 -17.46510 -17.01644 -16.68723 -15.93747 -15.80708 -15.56013 -15.38188 -15.29604 -14.39055 -14.28457 -14.05314 -13.88133 -13.82214 -13.60660 -13.43616 -13.33597 -13.24754 -12.75982 -12.49162 -12.23845 -12.02447 -11.81897 -11.59376 -11.01900 -10.69230 -10.56991 -10.40428 -10.07430 -9.55483 -8.66674 -4.79473 -0.06256 0.12225 0.69326 0.90128 1.28230 1.47911 1.66217 1.80173 1.88221 1.92356 1.97649 3.00634 3.23675 3.27618 3.43862 3.50086 3.73280 3.87223 4.02002 4.11314 4.24194 4.30360 4.41378 4.54037 4.55121 4.66012 4.71876 4.78133 4.79225 4.83371 4.87763 4.89457 5.05098 5.13544 5.27299 5.57125 5.72150 6.11572 6.27905 6.42129 6.73288 6.88954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C -0.254 4.254 3 C 0.055 3.945 4 C -0.041 4.041 5 O -0.533 6.533 6 Si 0.783 3.217 7 N -0.554 5.554 8 C 0.309 3.691 9 N -0.672 5.672 10 C 0.127 3.873 11 H 0.105 0.895 12 C -0.140 4.140 13 C 0.129 3.871 14 H 0.123 0.877 15 N -0.363 5.363 16 C 0.049 3.951 17 C -0.284 4.284 18 C 0.035 3.965 19 N -0.334 5.334 20 C -0.145 4.145 21 S 0.116 5.884 22 H 0.066 0.934 23 H 0.086 0.914 24 H 0.071 0.929 25 H 0.130 0.870 26 H 0.385 0.615 27 H -0.294 1.294 28 H -0.303 1.303 29 H 0.422 0.578 30 H 0.072 0.928 31 H 0.133 0.867 32 H 0.195 0.805 33 H 0.164 0.836 34 H 0.201 0.799 35 H 0.131 0.869 36 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.642 -1.502 0.684 1.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.377 4.377 3 C -0.075 4.075 4 C -0.154 4.154 5 O -0.340 6.340 6 Si 0.688 3.312 7 N -0.282 5.282 8 C -0.062 4.062 9 N -0.313 5.313 10 C 0.021 3.979 11 H 0.123 0.877 12 C -0.179 4.179 13 C 0.026 3.974 14 H 0.141 0.859 15 N -0.146 5.146 16 C -0.097 4.097 17 C -0.313 4.313 18 C -0.150 4.150 19 N -0.155 5.155 20 C -0.185 4.185 21 S 0.365 5.635 22 H 0.085 0.915 23 H 0.104 0.896 24 H 0.090 0.910 25 H 0.148 0.852 26 H 0.234 0.766 27 H -0.222 1.222 28 H -0.231 1.231 29 H 0.262 0.738 30 H 0.091 0.909 31 H 0.151 0.849 32 H 0.212 0.788 33 H 0.182 0.818 34 H 0.217 0.783 35 H 0.149 0.851 36 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 2.114 -1.111 0.698 2.488 hybrid contribution -1.576 0.087 0.641 1.704 sum 0.538 -1.024 1.339 1.769 Atomic orbital electron populations 1.20163 0.85694 1.02196 1.03709 1.25374 1.02087 0.93194 1.17032 1.20211 0.87049 0.97572 1.02714 1.24493 0.91753 0.95077 1.04071 1.86603 1.28604 1.89078 1.29686 0.92896 0.85293 0.73762 0.79213 1.65727 1.17214 1.17165 1.28068 1.23554 0.92829 0.91449 0.98353 1.43955 1.01261 1.06785 1.79266 1.22813 0.98340 0.79342 0.97409 0.87740 1.23802 0.96791 0.98580 0.98733 1.22027 0.99806 0.77797 0.97800 0.85919 1.48591 1.05833 1.10973 1.49193 1.22941 0.88099 0.97538 1.01109 1.21889 0.99702 0.96747 1.12954 1.24395 0.92055 0.99176 0.99415 1.77350 1.21970 0.95602 1.20587 1.24017 0.98777 0.98624 0.97109 1.83771 0.95908 1.09924 1.73854 0.91541 0.89581 0.91002 0.85198 0.76565 1.22165 1.23053 0.73791 0.90879 0.84945 0.78834 0.81796 0.78264 0.85090 0.89146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 0.03 8.90 71.24 0.63 0.67 16 2 C -0.25 -0.56 6.50 24.58 0.16 -0.40 16 3 C 0.05 0.19 5.92 41.41 0.25 0.44 16 4 C -0.04 -0.08 2.94 71.24 0.21 0.13 16 5 O -0.53 -0.87 10.18 -148.98 -1.52 -2.39 16 6 Si 0.78 1.91 32.08 68.60 2.20 4.11 16 7 N -0.55 -2.03 8.94 -189.85 -1.70 -3.73 16 8 C 0.31 0.17 8.24 179.32 1.48 1.64 16 9 N -0.67 3.39 5.51 -327.89 -1.81 1.58 16 10 C 0.13 -0.93 3.81 45.52 0.17 -0.75 16 11 H 0.10 -0.63 5.90 -2.39 -0.01 -0.64 16 12 C -0.14 1.03 7.63 31.12 0.24 1.27 16 13 C 0.13 -0.67 5.18 45.52 0.24 -0.44 16 14 H 0.12 -0.70 8.14 -2.39 -0.02 -0.72 16 15 N -0.36 -0.29 3.79 -325.00 -1.23 -1.52 16 16 C 0.05 -0.07 9.62 83.54 0.80 0.73 16 17 C -0.28 -0.05 10.80 21.99 0.24 0.19 16 18 C 0.03 0.10 12.03 85.24 1.03 1.13 16 19 N -0.33 -2.15 12.58 -57.02 -0.72 -2.86 16 20 C -0.15 1.32 7.13 31.12 0.22 1.54 16 21 S 0.12 -0.07 21.69 -56.49 -1.23 -1.29 16 22 H 0.07 -0.15 8.14 -2.39 -0.02 -0.17 16 23 H 0.09 -0.18 6.41 -2.39 -0.02 -0.19 16 24 H 0.07 0.04 8.14 -2.39 -0.02 0.02 16 25 H 0.13 0.05 7.96 -2.39 -0.02 0.03 16 26 H 0.38 -1.21 8.13 -74.05 -0.60 -1.81 16 27 H -0.29 -2.28 7.11 99.48 0.71 -1.57 16 28 H -0.30 -2.54 7.11 99.48 0.71 -1.83 16 29 H 0.42 -3.15 8.85 -92.71 -0.82 -3.97 16 30 H 0.07 -0.24 8.14 -2.38 -0.02 -0.26 16 31 H 0.13 -1.53 8.12 -2.39 -0.02 -1.55 16 32 H 0.19 -1.48 6.67 -2.91 -0.02 -1.50 16 33 H 0.16 -0.63 8.06 -2.91 -0.02 -0.65 16 34 H 0.20 -0.47 8.06 -2.91 -0.02 -0.49 16 35 H 0.13 -1.51 8.14 -2.39 -0.02 -1.53 16 36 H 0.09 -0.81 6.98 -2.39 -0.02 -0.82 16 Total: 0.00 -17.04 313.54 -0.59 -17.63 By element: Atomic # 1 Polarization: -17.41 SS G_CDS: -0.26 Total: -17.67 kcal Atomic # 6 Polarization: 0.48 SS G_CDS: 5.66 Total: 6.14 kcal Atomic # 7 Polarization: -1.08 SS G_CDS: -5.45 Total: -6.54 kcal Atomic # 8 Polarization: -0.87 SS G_CDS: -1.52 Total: -2.39 kcal Atomic # 14 Polarization: 1.91 SS G_CDS: 2.20 Total: 4.11 kcal Atomic # 16 Polarization: -0.07 SS G_CDS: -1.23 Total: -1.29 kcal Total: -17.04 -0.59 -17.63 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_15494094_15704122.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.314 kcal (2) G-P(sol) polarization free energy of solvation -17.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 140.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.633 kcal (6) G-S(sol) free energy of system = (1) + (5) 139.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds