Wall clock time and date at job start Mon Mar 8 2021 06:23:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42908 * 1 3 3 Si 1.86297 * 109.46961 * 2 1 4 4 C 1.50701 * 109.46834 * 240.00225 * 2 1 3 5 5 C 1.38839 * 120.33281 * 299.99806 * 4 2 1 6 6 C 1.38350 * 118.50250 * 180.02562 * 5 4 2 7 7 C 1.39095 * 119.09673 * 0.25529 * 6 5 4 8 8 N 1.39007 * 119.70180 * 179.74354 * 7 6 5 9 9 C 1.46500 * 120.00087 * 0.02562 * 8 7 6 10 10 H 1.08995 * 112.85144 * 23.79692 * 9 8 7 11 11 C 1.53776 * 113.61616 * 154.99980 * 9 8 7 12 12 C 1.53779 * 87.08390 * 139.97875 * 11 9 8 13 13 H 1.09006 * 113.61563 * 220.01804 * 12 11 9 14 14 N 1.46496 * 113.61296 * 89.11741 * 12 11 9 15 15 C 1.34430 * 126.82041 * 274.71030 * 14 12 11 16 16 N 1.30835 * 108.07871 * 179.89450 * 15 14 12 17 17 C 1.33250 * 109.82515 * 0.38087 * 16 15 14 18 18 N 1.30710 * 108.94758 * 359.76534 * 17 16 15 19 19 C 1.53780 * 113.61170 * 252.49566 * 9 8 7 20 20 N 1.32423 * 120.58937 * 359.45560 * 7 6 5 21 21 C 1.31936 * 121.62344 * 0.58051 * 20 7 6 22 22 H 0.96703 * 113.99835 * 59.99722 * 1 2 3 23 23 H 1.08993 * 109.47042 * 120.00377 * 2 1 3 24 24 H 1.48498 * 110.00349 * 298.67897 * 3 2 1 25 25 H 1.48501 * 110.00276 * 60.00228 * 3 2 1 26 26 H 1.07998 * 120.75060 * 0.04610 * 5 4 2 27 27 H 1.08002 * 120.44720 * 179.97438 * 6 5 4 28 28 H 0.96994 * 119.99911 * 180.02562 * 8 7 6 29 29 H 1.09002 * 113.61409 * 254.52946 * 11 9 8 30 30 H 1.09004 * 113.61669 * 25.43158 * 11 9 8 31 31 H 1.07998 * 125.96616 * 0.03671 * 15 14 12 32 32 H 1.07997 * 125.52700 * 179.79931 * 17 16 15 33 33 H 1.08999 * 113.61841 * 334.56378 * 19 9 8 34 34 H 1.08997 * 113.61729 * 105.47370 * 19 9 8 35 35 H 1.08006 * 119.57233 * 179.71038 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7104 -1.2305 5 6 1.6002 -2.0395 -1.4571 6 6 2.0823 -2.6547 -2.5987 7 6 2.8823 -1.9264 -3.4730 8 7 3.3780 -2.5336 -4.6210 9 6 3.0566 -3.9343 -4.9059 10 1 2.1392 -4.2655 -4.4193 11 6 3.1244 -4.2902 -6.4004 12 6 3.7697 -5.6193 -5.9740 13 1 4.5845 -5.9376 -6.6244 14 7 2.7995 -6.6853 -5.7122 15 6 2.1446 -6.9136 -4.5607 16 7 1.3698 -7.9536 -4.7335 17 6 1.5084 -8.4191 -5.9743 18 7 2.3734 -7.6755 -6.6125 19 6 4.2430 -4.8917 -4.7046 20 7 3.1714 -0.6583 -3.2243 21 6 2.7260 -0.0463 -2.1436 22 1 -0.3933 0.4418 -0.7651 23 1 1.7924 -0.5139 0.8899 24 1 1.5880 2.4586 -1.2242 25 1 1.5616 2.4679 1.2085 26 1 0.9799 -2.5809 -0.7582 27 1 1.8444 -3.6876 -2.8058 28 1 3.9366 -2.0300 -5.2334 29 1 2.1459 -4.4093 -6.8657 30 1 3.7909 -3.6452 -6.9731 31 1 2.2395 -6.3376 -3.6521 32 1 0.9897 -9.2722 -6.3861 33 1 5.2153 -4.4112 -4.8137 34 1 4.1677 -5.4965 -3.8010 35 1 2.9860 0.9877 -1.9712 There are 49 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 49 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_15494096_13915762.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:23:19 Heat of formation + Delta-G solvation = 148.722205 kcal Electronic energy + Delta-G solvation = -20394.652147 eV Core-core repulsion = 17204.972681 eV Total energy + Delta-G solvation = -3189.679466 eV No. of doubly occupied orbitals = 49 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 274.117 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.25088 -41.49007 -40.21781 -38.03021 -35.74820 -33.50207 -32.97635 -32.15571 -31.04584 -27.10173 -27.00407 -25.65965 -24.83628 -23.39142 -22.90202 -22.25690 -20.86142 -18.85913 -18.57374 -18.06412 -17.71334 -16.81412 -16.50502 -16.30733 -16.23337 -16.00431 -15.85232 -15.27888 -15.10813 -14.64703 -14.37438 -14.00995 -13.91096 -13.63640 -13.47992 -13.11115 -12.99458 -12.48245 -12.36744 -12.05503 -11.71017 -11.16097 -11.06951 -10.88793 -10.77802 -10.63287 -10.53285 -10.39793 -8.71904 -4.91015 0.22127 0.40721 0.58163 1.23931 1.34597 1.61114 1.92971 1.97696 2.07280 2.80027 3.00688 3.26418 3.39363 3.45095 3.52204 3.60749 3.78147 3.79559 3.86998 3.97654 4.05907 4.12583 4.31400 4.35498 4.57610 4.60486 4.61727 4.67911 4.75981 4.79689 4.93002 5.03151 5.25865 5.32197 5.39288 5.51883 5.85021 6.00788 6.50133 6.53287 7.05070 7.14091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.549 6.549 2 C -0.063 4.063 3 Si 0.755 3.245 4 C -0.233 4.233 5 C -0.012 4.012 6 C -0.242 4.242 7 C 0.395 3.605 8 N -0.704 5.704 9 C 0.130 3.870 10 H 0.113 0.887 11 C -0.144 4.144 12 C 0.124 3.876 13 H 0.126 0.874 14 N -0.364 5.364 15 C 0.255 3.745 16 N -0.576 5.576 17 C 0.191 3.809 18 N -0.348 5.348 19 C -0.142 4.142 20 N -0.563 5.563 21 C 0.146 3.854 22 H 0.384 0.616 23 H 0.127 0.873 24 H -0.286 1.286 25 H -0.302 1.302 26 H 0.146 0.854 27 H 0.151 0.849 28 H 0.411 0.589 29 H 0.069 0.931 30 H 0.127 0.873 31 H 0.249 0.751 32 H 0.237 0.763 33 H 0.129 0.871 34 H 0.096 0.904 35 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.196 0.721 0.086 4.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.357 6.357 2 C -0.173 4.173 3 Si 0.662 3.338 4 C -0.238 4.238 5 C -0.038 4.038 6 C -0.266 4.266 7 C 0.159 3.841 8 N -0.336 5.336 9 C 0.024 3.976 10 H 0.130 0.870 11 C -0.183 4.183 12 C 0.021 3.979 13 H 0.143 0.857 14 N -0.155 5.155 15 C -0.041 4.041 16 N -0.303 5.303 17 C -0.112 4.112 18 N -0.175 5.175 19 C -0.182 4.182 20 N -0.280 5.280 21 C -0.011 4.011 22 H 0.233 0.767 23 H 0.144 0.856 24 H -0.212 1.212 25 H -0.230 1.230 26 H 0.163 0.837 27 H 0.169 0.831 28 H 0.248 0.752 29 H 0.087 0.913 30 H 0.146 0.854 31 H 0.264 0.736 32 H 0.253 0.747 33 H 0.147 0.853 34 H 0.114 0.886 35 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 4.592 1.300 -0.524 4.801 hybrid contribution -1.514 -0.240 -0.199 1.546 sum 3.078 1.060 -0.723 3.334 Atomic orbital electron populations 1.86570 1.18756 1.80238 1.50148 1.24890 0.83105 1.10977 0.98305 0.94289 0.90471 0.72693 0.76393 1.20968 1.05760 0.96732 1.00351 1.21414 0.93805 0.93285 0.95252 1.21673 1.04943 1.02732 0.97251 1.18654 0.89441 0.88373 0.87612 1.44450 1.55238 1.11488 1.22425 1.22726 0.98659 0.80053 0.96200 0.86971 1.23799 1.02836 0.95028 0.96626 1.22208 0.90252 0.84056 1.01409 0.85662 1.50395 1.33130 1.22924 1.09011 1.26614 0.89491 0.94745 0.93291 1.70607 1.26527 1.13432 1.19770 1.26563 0.95618 1.00254 0.88721 1.78038 1.18970 1.03159 1.17342 1.24020 1.01150 0.96541 0.96468 1.67154 1.28324 1.09797 1.22717 1.22447 0.91604 0.99311 0.87728 0.76661 0.85571 1.21234 1.23031 0.83655 0.83120 0.75154 0.91258 0.85447 0.73558 0.74705 0.85262 0.88567 0.81746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -0.75 12.78 -148.98 -1.90 -2.65 16 2 C -0.06 0.12 2.84 71.24 0.20 0.32 16 3 Si 0.76 -1.82 29.82 68.60 2.05 0.23 16 4 C -0.23 0.23 5.40 -19.76 -0.11 0.13 16 5 C -0.01 0.02 9.77 22.44 0.22 0.24 16 6 C -0.24 0.67 9.29 22.50 0.21 0.88 16 7 C 0.39 -0.25 7.65 133.05 1.02 0.77 16 8 N -0.70 4.09 5.53 -322.07 -1.78 2.31 16 9 C 0.13 -1.22 3.62 45.52 0.16 -1.05 16 10 H 0.11 -1.06 5.01 -2.39 -0.01 -1.07 16 11 C -0.14 1.23 7.63 31.12 0.24 1.47 16 12 C 0.12 -0.91 5.21 45.52 0.24 -0.68 16 13 H 0.13 -0.97 8.14 -2.38 -0.02 -0.99 16 14 N -0.36 0.32 3.81 -328.94 -1.25 -0.93 16 15 C 0.25 -0.44 10.82 180.36 1.95 1.51 16 16 N -0.58 -2.67 11.19 -204.00 -2.28 -4.95 16 17 C 0.19 0.77 13.03 180.76 2.36 3.12 16 18 N -0.35 -1.86 12.70 -61.24 -0.78 -2.64 16 19 C -0.14 1.65 7.14 31.12 0.22 1.88 16 20 N -0.56 -1.52 10.39 -193.26 -2.01 -3.53 16 21 C 0.15 0.05 9.84 84.64 0.83 0.88 16 22 H 0.38 -1.37 8.70 -74.06 -0.64 -2.01 16 23 H 0.13 -0.49 7.96 -2.39 -0.02 -0.51 16 24 H -0.29 -0.56 7.11 99.48 0.71 0.14 16 25 H -0.30 -1.64 7.11 99.48 0.71 -0.94 16 26 H 0.15 -0.55 8.06 -2.91 -0.02 -0.58 16 27 H 0.15 -1.17 6.03 -2.91 -0.02 -1.19 16 28 H 0.41 -2.78 8.85 -92.71 -0.82 -3.60 16 29 H 0.07 -0.29 8.14 -2.39 -0.02 -0.31 16 30 H 0.13 -1.49 8.12 -2.38 -0.02 -1.51 16 31 H 0.25 -2.64 6.76 -2.91 -0.02 -2.66 16 32 H 0.24 -0.49 8.06 -2.91 -0.02 -0.52 16 33 H 0.13 -1.73 8.14 -2.39 -0.02 -1.75 16 34 H 0.10 -1.23 7.02 -2.39 -0.02 -1.24 16 35 H 0.17 -0.52 4.88 -2.91 -0.01 -0.53 16 Total: 0.00 -21.25 296.53 -0.69 -21.95 By element: Atomic # 1 Polarization: -18.97 SS G_CDS: -0.27 Total: -19.25 kcal Atomic # 6 Polarization: 1.93 SS G_CDS: 7.54 Total: 9.47 kcal Atomic # 7 Polarization: -1.64 SS G_CDS: -8.10 Total: -9.75 kcal Atomic # 8 Polarization: -0.75 SS G_CDS: -1.90 Total: -2.65 kcal Atomic # 14 Polarization: -1.82 SS G_CDS: 2.05 Total: 0.23 kcal Total: -21.25 -0.69 -21.95 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_15494096_13915762.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.668 kcal (2) G-P(sol) polarization free energy of solvation -21.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 149.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.945 kcal (6) G-S(sol) free energy of system = (1) + (5) 148.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds