Wall clock time and date at job start Mon Mar 8 2021 06:23:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42896 * 1 3 3 Si 1.86299 * 109.47377 * 2 1 4 4 C 1.50701 * 109.47179 * 120.00048 * 2 1 3 5 5 C 1.33330 * 125.95460 * 64.99773 * 4 2 1 6 6 N 1.32117 * 114.58114 * 180.02562 * 5 4 2 7 7 C 1.29692 * 116.86774 * 359.97438 * 6 5 4 8 8 N 1.38612 * 124.95147 * 179.97438 * 7 6 5 9 9 C 1.46504 * 119.99622 * 0.02737 * 8 7 6 10 10 H 1.08999 * 112.84904 * 336.19308 * 9 8 7 11 11 C 1.53780 * 113.61343 * 107.50195 * 9 8 7 12 12 C 1.53781 * 87.08179 * 139.97695 * 11 9 8 13 13 H 1.08999 * 113.69255 * 220.00506 * 12 11 9 14 14 N 1.46497 * 113.61526 * 89.11598 * 12 11 9 15 15 C 1.34433 * 126.81976 * 347.49845 * 14 12 11 16 16 N 1.30830 * 108.07650 * 179.73774 * 15 14 12 17 17 C 1.33244 * 109.82956 * 0.27201 * 16 15 14 18 18 N 1.30709 * 108.94525 * 359.97438 * 17 16 15 19 19 C 1.53781 * 113.60884 * 204.99659 * 9 8 7 20 20 S 1.70966 * 110.09737 * 0.24410 * 7 6 5 21 21 H 0.96701 * 113.99763 * 60.00153 * 1 2 3 22 22 H 1.09002 * 109.47397 * 239.99887 * 2 1 3 23 23 H 1.48497 * 109.99993 * 59.99734 * 3 2 1 24 24 H 1.48500 * 110.00182 * 181.32059 * 3 2 1 25 25 H 1.07997 * 122.70636 * 0.02562 * 5 4 2 26 26 H 0.96992 * 119.99793 * 180.02562 * 8 7 6 27 27 H 1.08999 * 113.61794 * 25.43003 * 11 9 8 28 28 H 1.09000 * 113.61571 * 254.52879 * 11 9 8 29 29 H 1.08002 * 125.96533 * 0.02562 * 15 14 12 30 30 H 1.08000 * 125.52768 * 179.97438 * 17 16 15 31 31 H 1.09004 * 113.61155 * 105.47056 * 19 9 8 32 32 H 1.08994 * 113.61700 * 334.56611 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7104 1.2305 5 6 1.7622 -2.0026 1.5122 6 7 2.2973 -2.3902 2.6563 7 6 2.9109 -1.4846 3.3530 8 7 3.5297 -1.7056 4.5735 9 6 3.5207 -3.0448 5.1674 10 1 2.6946 -3.6602 4.8112 11 6 4.8855 -3.7514 5.1141 12 6 4.5868 -4.2650 6.5325 13 1 5.4533 -4.2544 7.1936 14 7 3.8695 -5.5421 6.5553 15 6 3.2696 -6.1479 5.5159 16 7 2.7480 -7.2684 5.9449 17 6 2.9880 -7.4089 7.2480 18 7 3.6691 -6.3753 7.6680 19 6 3.6708 -3.0408 6.6979 20 16 2.8388 0.0232 2.5502 21 1 -0.3933 0.4417 -0.7651 22 1 1.7924 -0.5138 -0.8900 23 1 1.5615 2.4679 1.2084 24 1 3.5346 1.7702 -0.0322 25 1 1.2307 -2.6778 0.8581 26 1 3.9686 -0.9736 5.0343 27 1 5.7310 -3.0652 5.0672 28 1 4.9389 -4.5421 4.3656 29 1 3.2296 -5.7769 4.5024 30 1 2.6711 -8.2417 7.8583 31 1 2.7434 -3.2578 7.2281 32 1 4.1842 -2.1603 7.0840 There are 47 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 47 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_15494096_15704118.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:23:22 Heat of formation + Delta-G solvation = 156.347010 kcal Electronic energy + Delta-G solvation = -18954.402665 eV Core-core repulsion = 15854.206082 eV Total energy + Delta-G solvation = -3100.196583 eV No. of doubly occupied orbitals = 47 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 280.073 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -43.21288 -41.06300 -40.15271 -37.86433 -35.86143 -33.00593 -32.05214 -31.32106 -27.31913 -27.29755 -26.15475 -24.50330 -23.33590 -22.75280 -21.23506 -20.78118 -19.58110 -18.51942 -18.13073 -17.74275 -17.36790 -16.49247 -16.20475 -15.95686 -15.75940 -15.69012 -15.28774 -14.88769 -14.61382 -14.32809 -14.12798 -13.92382 -13.49164 -13.01589 -12.87287 -12.63490 -12.46613 -12.10441 -11.94268 -11.31620 -10.95609 -10.77046 -10.72221 -10.64313 -10.37458 -10.22928 -8.88078 -5.25905 -0.14648 0.00305 0.58149 0.62298 1.16388 1.17647 1.52891 1.86859 1.92343 1.95919 2.04586 2.77639 3.01793 3.28960 3.37712 3.39420 3.49665 3.64069 3.80071 3.92293 4.06126 4.10096 4.20122 4.35497 4.41269 4.42928 4.54732 4.65797 4.68452 5.03164 5.28608 5.46852 5.65472 5.80018 5.87222 6.54511 6.87783 7.13020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.545 6.545 2 C -0.018 4.018 3 Si 0.669 3.331 4 C -0.258 4.258 5 C 0.123 3.877 6 N -0.545 5.545 7 C 0.325 3.675 8 N -0.682 5.682 9 C 0.137 3.863 10 H 0.121 0.879 11 C -0.157 4.157 12 C 0.135 3.865 13 H 0.123 0.877 14 N -0.367 5.367 15 C 0.256 3.744 16 N -0.542 5.542 17 C 0.200 3.800 18 N -0.316 5.316 19 C -0.153 4.153 20 S 0.075 5.925 21 H 0.384 0.616 22 H 0.083 0.917 23 H -0.239 1.239 24 H -0.243 1.243 25 H 0.180 0.820 26 H 0.416 0.584 27 H 0.114 0.886 28 H 0.088 0.912 29 H 0.217 0.783 30 H 0.220 0.780 31 H 0.088 0.912 32 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.026 4.815 -3.307 6.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.352 6.352 2 C -0.132 4.132 3 Si 0.568 3.432 4 C -0.380 4.380 5 C -0.028 4.028 6 N -0.270 5.270 7 C -0.045 4.045 8 N -0.320 5.320 9 C 0.030 3.970 10 H 0.139 0.861 11 C -0.197 4.197 12 C 0.031 3.969 13 H 0.140 0.860 14 N -0.158 5.158 15 C -0.041 4.041 16 N -0.268 5.268 17 C -0.102 4.102 18 N -0.143 5.143 19 C -0.193 4.193 20 S 0.324 5.676 21 H 0.231 0.769 22 H 0.101 0.899 23 H -0.162 1.162 24 H -0.167 1.167 25 H 0.197 0.803 26 H 0.254 0.746 27 H 0.132 0.868 28 H 0.107 0.893 29 H 0.234 0.766 30 H 0.236 0.764 31 H 0.106 0.894 32 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 3.023 5.329 -1.286 6.260 hybrid contribution -0.205 -0.667 -0.352 0.782 sum 2.818 4.662 -1.639 5.689 Atomic orbital electron populations 1.86523 1.17118 1.81762 1.49785 1.23690 0.85531 1.09332 0.94650 0.95064 0.81741 0.78123 0.88233 1.24318 1.14486 0.96801 1.02378 1.21357 0.96335 0.93133 0.91980 1.66440 1.18688 1.33287 1.08628 1.23826 0.95458 0.93119 0.92056 1.43959 1.59320 1.11458 1.17312 1.22738 0.98192 0.83715 0.92403 0.86106 1.24030 0.99783 1.01160 0.94757 1.21930 0.95485 0.79314 1.00217 0.85962 1.50240 1.41266 1.17571 1.06694 1.26091 0.92046 0.89823 0.96101 1.70625 1.26285 1.18243 1.11688 1.26127 0.95714 0.97372 0.91028 1.78097 1.23176 1.04713 1.08293 1.23859 1.01480 0.97894 0.96057 1.84147 1.55811 1.11791 1.15838 0.76851 0.89910 1.16224 1.16669 0.80325 0.74569 0.86766 0.89342 0.76648 0.76413 0.89366 0.87164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 0.12 12.86 -35.23 -0.45 -0.34 16 2 C -0.02 0.01 2.98 36.01 0.11 0.12 16 3 Si 0.67 -0.85 31.07 -169.99 -5.28 -6.13 16 4 C -0.26 -0.51 5.76 -36.02 -0.21 -0.72 16 5 C 0.12 0.29 11.24 -19.14 -0.22 0.07 16 6 N -0.55 -1.52 9.83 -15.21 -0.15 -1.67 16 7 C 0.33 0.44 8.09 -87.67 -0.71 -0.27 16 8 N -0.68 1.10 5.51 -54.99 -0.30 0.80 16 9 C 0.14 -0.30 3.95 -67.12 -0.27 -0.56 16 10 H 0.12 -0.04 6.55 -51.93 -0.34 -0.38 16 11 C -0.16 0.54 7.14 -25.92 -0.18 0.36 16 12 C 0.14 -0.29 5.21 -67.12 -0.35 -0.64 16 13 H 0.12 -0.34 8.14 -51.93 -0.42 -0.76 16 14 N -0.37 -0.40 3.81 -55.32 -0.21 -0.61 16 15 C 0.26 0.34 10.82 -90.65 -0.98 -0.64 16 16 N -0.54 -2.03 11.19 -15.83 -0.18 -2.20 16 17 C 0.20 0.56 13.03 -91.81 -1.20 -0.64 16 18 N -0.32 -1.09 12.70 29.29 0.37 -0.72 16 19 C -0.15 0.45 7.63 -25.92 -0.20 0.26 16 20 S 0.08 0.12 20.59 -107.50 -2.21 -2.10 16 21 H 0.38 -2.05 8.74 45.56 0.40 -1.66 16 22 H 0.08 -0.20 7.96 -51.93 -0.41 -0.62 16 23 H -0.24 -0.46 7.11 56.52 0.40 -0.06 16 24 H -0.24 -0.24 7.11 56.52 0.40 0.16 16 25 H 0.18 0.12 8.06 -52.49 -0.42 -0.31 16 26 H 0.42 -1.61 8.85 -40.82 -0.36 -1.97 16 27 H 0.11 -0.54 8.14 -51.93 -0.42 -0.96 16 28 H 0.09 -0.27 7.03 -51.93 -0.37 -0.63 16 29 H 0.22 -0.34 6.75 -52.49 -0.35 -0.69 16 30 H 0.22 -0.12 8.06 -52.49 -0.42 -0.54 16 31 H 0.09 -0.10 8.14 -51.93 -0.42 -0.52 16 32 H 0.11 -0.55 8.12 -51.93 -0.42 -0.97 16 LS Contribution 292.16 15.07 4.40 4.40 Total: 0.00 -9.76 292.16 -11.38 -21.14 By element: Atomic # 1 Polarization: -6.74 SS G_CDS: -3.17 Total: -9.91 kcal Atomic # 6 Polarization: 1.53 SS G_CDS: -4.20 Total: -2.67 kcal Atomic # 7 Polarization: -3.94 SS G_CDS: -0.47 Total: -4.40 kcal Atomic # 8 Polarization: 0.12 SS G_CDS: -0.45 Total: -0.34 kcal Atomic # 14 Polarization: -0.85 SS G_CDS: -5.28 Total: -6.13 kcal Atomic # 16 Polarization: 0.12 SS G_CDS: -2.21 Total: -2.10 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -9.76 -11.38 -21.14 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_15494096_15704118.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 177.488 kcal (2) G-P(sol) polarization free energy of solvation -9.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 167.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.141 kcal (6) G-S(sol) free energy of system = (1) + (5) 156.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds