Wall clock time and date at job start Mon Mar 8 2021 06:23:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42896 * 1 3 3 Si 1.86299 * 109.47377 * 2 1 4 4 C 1.50701 * 109.47179 * 120.00048 * 2 1 3 5 5 C 1.33330 * 125.95460 * 64.99773 * 4 2 1 6 6 N 1.32117 * 114.58114 * 180.02562 * 5 4 2 7 7 C 1.29692 * 116.86774 * 359.97438 * 6 5 4 8 8 N 1.38612 * 124.95147 * 179.97438 * 7 6 5 9 9 C 1.46504 * 119.99622 * 0.02737 * 8 7 6 10 10 H 1.08999 * 112.84904 * 336.19308 * 9 8 7 11 11 C 1.53780 * 113.61343 * 107.50195 * 9 8 7 12 12 C 1.53781 * 87.08179 * 139.97695 * 11 9 8 13 13 H 1.08999 * 113.69255 * 220.00506 * 12 11 9 14 14 N 1.46497 * 113.61526 * 89.11598 * 12 11 9 15 15 C 1.34433 * 126.81976 * 347.49845 * 14 12 11 16 16 N 1.30830 * 108.07650 * 179.73774 * 15 14 12 17 17 C 1.33244 * 109.82956 * 0.27201 * 16 15 14 18 18 N 1.30709 * 108.94525 * 359.97438 * 17 16 15 19 19 C 1.53781 * 113.60884 * 204.99659 * 9 8 7 20 20 S 1.70966 * 110.09737 * 0.24410 * 7 6 5 21 21 H 0.96701 * 113.99763 * 60.00153 * 1 2 3 22 22 H 1.09002 * 109.47397 * 239.99887 * 2 1 3 23 23 H 1.48497 * 109.99993 * 59.99734 * 3 2 1 24 24 H 1.48500 * 110.00182 * 181.32059 * 3 2 1 25 25 H 1.07997 * 122.70636 * 0.02562 * 5 4 2 26 26 H 0.96992 * 119.99793 * 180.02562 * 8 7 6 27 27 H 1.08999 * 113.61794 * 25.43003 * 11 9 8 28 28 H 1.09000 * 113.61571 * 254.52879 * 11 9 8 29 29 H 1.08002 * 125.96533 * 0.02562 * 15 14 12 30 30 H 1.08000 * 125.52768 * 179.97438 * 17 16 15 31 31 H 1.09004 * 113.61155 * 105.47056 * 19 9 8 32 32 H 1.08994 * 113.61700 * 334.56611 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7104 1.2305 5 6 1.7622 -2.0026 1.5122 6 7 2.2973 -2.3902 2.6563 7 6 2.9109 -1.4846 3.3530 8 7 3.5297 -1.7056 4.5735 9 6 3.5207 -3.0448 5.1674 10 1 2.6946 -3.6602 4.8112 11 6 4.8855 -3.7514 5.1141 12 6 4.5868 -4.2650 6.5325 13 1 5.4533 -4.2544 7.1936 14 7 3.8695 -5.5421 6.5553 15 6 3.2696 -6.1479 5.5159 16 7 2.7480 -7.2684 5.9449 17 6 2.9880 -7.4089 7.2480 18 7 3.6691 -6.3753 7.6680 19 6 3.6708 -3.0408 6.6979 20 16 2.8388 0.0232 2.5502 21 1 -0.3933 0.4417 -0.7651 22 1 1.7924 -0.5138 -0.8900 23 1 1.5615 2.4679 1.2084 24 1 3.5346 1.7702 -0.0322 25 1 1.2307 -2.6778 0.8581 26 1 3.9686 -0.9736 5.0343 27 1 5.7310 -3.0652 5.0672 28 1 4.9389 -4.5421 4.3656 29 1 3.2296 -5.7769 4.5024 30 1 2.6711 -8.2417 7.8583 31 1 2.7434 -3.2578 7.2281 32 1 4.1842 -2.1603 7.0840 There are 47 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 47 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_15494096_15704118.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:23:21 Heat of formation + Delta-G solvation = 156.106909 kcal Electronic energy + Delta-G solvation = -18954.413077 eV Core-core repulsion = 15854.206082 eV Total energy + Delta-G solvation = -3100.206995 eV No. of doubly occupied orbitals = 47 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 280.073 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -43.28759 -41.05645 -40.11243 -37.79020 -35.82954 -33.07535 -32.16573 -31.33271 -27.29023 -27.09529 -26.13567 -24.53620 -23.35953 -22.84079 -21.19901 -20.79166 -19.58839 -18.43497 -18.06045 -17.73843 -17.29912 -16.53439 -16.20801 -16.00357 -15.79744 -15.65560 -15.30192 -14.88406 -14.63204 -14.33363 -14.05248 -13.69080 -13.35747 -13.09199 -12.86961 -12.61398 -12.45699 -12.14634 -11.79303 -11.26704 -11.11252 -10.92469 -10.80373 -10.67428 -10.41159 -10.23167 -8.88638 -5.17953 -0.21193 -0.05061 0.50917 0.52860 1.19671 1.24377 1.57341 1.84190 1.89333 1.92066 2.03432 2.93462 3.18696 3.37330 3.45642 3.48377 3.58678 3.78721 3.83333 3.98208 4.07418 4.23875 4.48003 4.50251 4.53475 4.61287 4.64047 4.72124 4.80502 5.04416 5.22586 5.36690 5.66701 5.80339 6.01258 6.83347 6.92164 7.01018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.564 6.564 2 C -0.024 4.024 3 Si 0.754 3.246 4 C -0.273 4.273 5 C 0.110 3.890 6 N -0.567 5.567 7 C 0.326 3.674 8 N -0.669 5.669 9 C 0.134 3.866 10 H 0.102 0.898 11 C -0.141 4.141 12 C 0.126 3.874 13 H 0.133 0.867 14 N -0.365 5.365 15 C 0.257 3.743 16 N -0.576 5.576 17 C 0.192 3.808 18 N -0.344 5.344 19 C -0.141 4.141 20 S 0.057 5.943 21 H 0.405 0.595 22 H 0.107 0.893 23 H -0.285 1.285 24 H -0.273 1.273 25 H 0.189 0.811 26 H 0.428 0.572 27 H 0.135 0.865 28 H 0.086 0.914 29 H 0.239 0.761 30 H 0.240 0.760 31 H 0.069 0.931 32 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.623 5.376 -3.779 7.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.375 6.375 2 C -0.138 4.138 3 Si 0.658 3.342 4 C -0.395 4.395 5 C -0.040 4.040 6 N -0.294 5.294 7 C -0.045 4.045 8 N -0.309 5.309 9 C 0.026 3.974 10 H 0.120 0.880 11 C -0.181 4.181 12 C 0.023 3.977 13 H 0.151 0.849 14 N -0.155 5.155 15 C -0.039 4.039 16 N -0.304 5.304 17 C -0.111 4.111 18 N -0.172 5.172 19 C -0.181 4.181 20 S 0.306 5.694 21 H 0.256 0.744 22 H 0.124 0.876 23 H -0.212 1.212 24 H -0.200 1.200 25 H 0.206 0.794 26 H 0.268 0.732 27 H 0.153 0.847 28 H 0.105 0.895 29 H 0.255 0.745 30 H 0.256 0.744 31 H 0.087 0.913 32 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 3.622 5.903 -1.771 7.149 hybrid contribution -0.391 -0.796 -0.165 0.902 sum 3.230 5.108 -1.936 6.346 Atomic orbital electron populations 1.86470 1.17169 1.82344 1.51507 1.23854 0.85652 1.09729 0.94517 0.94135 0.78570 0.75838 0.85660 1.24669 1.14698 0.96988 1.03187 1.21592 0.96583 0.93609 0.92208 1.66455 1.19714 1.33943 1.09239 1.24005 0.95163 0.92683 0.92645 1.44042 1.58432 1.12150 1.16291 1.22722 0.98519 0.83285 0.92863 0.88034 1.23992 0.99460 1.00998 0.93661 1.22209 0.95729 0.78277 1.01476 0.84903 1.50410 1.40993 1.18103 1.06016 1.26473 0.91260 0.89316 0.96897 1.70605 1.27683 1.19702 1.12387 1.26607 0.95466 0.97893 0.91108 1.78012 1.24038 1.05416 1.09699 1.23846 1.00689 0.98443 0.95097 1.84163 1.56352 1.12394 1.16521 0.74366 0.87563 1.21173 1.19951 0.79400 0.73207 0.84672 0.89504 0.74544 0.74383 0.91268 0.84507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 0.54 12.86 -148.98 -1.92 -1.38 16 2 C -0.02 0.03 2.98 71.24 0.21 0.25 16 3 Si 0.75 -1.83 31.07 68.60 2.13 0.30 16 4 C -0.27 -1.19 5.76 24.58 0.14 -1.04 16 5 C 0.11 0.57 11.24 83.54 0.94 1.51 16 6 N -0.57 -3.49 9.83 -202.02 -1.99 -5.48 16 7 C 0.33 0.97 8.09 179.32 1.45 2.42 16 8 N -0.67 2.45 5.51 -327.89 -1.81 0.65 16 9 C 0.13 -0.63 3.95 45.52 0.18 -0.45 16 10 H 0.10 -0.01 6.55 -2.39 -0.02 -0.03 16 11 C -0.14 1.13 7.14 31.12 0.22 1.35 16 12 C 0.13 -0.62 5.21 45.52 0.24 -0.38 16 13 H 0.13 -0.89 8.14 -2.39 -0.02 -0.91 16 14 N -0.36 -0.90 3.81 -328.93 -1.25 -2.15 16 15 C 0.26 0.83 10.82 180.36 1.95 2.78 16 16 N -0.58 -4.84 11.19 -204.00 -2.28 -7.12 16 17 C 0.19 1.25 13.03 180.77 2.36 3.60 16 18 N -0.34 -2.61 12.70 -61.25 -0.78 -3.38 16 19 C -0.14 0.93 7.63 31.12 0.24 1.17 16 20 S 0.06 0.21 20.59 -56.49 -1.16 -0.95 16 21 H 0.40 -4.75 8.74 -74.06 -0.65 -5.40 16 22 H 0.11 -0.66 7.96 -2.39 -0.02 -0.68 16 23 H -0.28 -1.48 7.11 99.48 0.71 -0.77 16 24 H -0.27 -0.68 7.11 99.48 0.71 0.02 16 25 H 0.19 0.34 8.06 -2.91 -0.02 0.32 16 26 H 0.43 -3.70 8.85 -92.71 -0.82 -4.52 16 27 H 0.14 -1.59 8.14 -2.39 -0.02 -1.61 16 28 H 0.09 -0.60 7.03 -2.39 -0.02 -0.62 16 29 H 0.24 -0.65 6.75 -2.91 -0.02 -0.67 16 30 H 0.24 -0.07 8.06 -2.91 -0.02 -0.10 16 31 H 0.07 -0.13 8.14 -2.39 -0.02 -0.15 16 32 H 0.14 -1.63 8.12 -2.39 -0.02 -1.65 16 Total: 0.00 -23.70 292.16 -1.38 -25.08 By element: Atomic # 1 Polarization: -16.51 SS G_CDS: -0.25 Total: -16.76 kcal Atomic # 6 Polarization: 3.28 SS G_CDS: 7.93 Total: 11.20 kcal Atomic # 7 Polarization: -9.38 SS G_CDS: -8.11 Total: -17.49 kcal Atomic # 8 Polarization: 0.54 SS G_CDS: -1.92 Total: -1.38 kcal Atomic # 14 Polarization: -1.83 SS G_CDS: 2.13 Total: 0.30 kcal Atomic # 16 Polarization: 0.21 SS G_CDS: -1.16 Total: -0.95 kcal Total: -23.70 -1.38 -25.08 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_15494096_15704118.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 181.187 kcal (2) G-P(sol) polarization free energy of solvation -23.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 157.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.080 kcal (6) G-S(sol) free energy of system = (1) + (5) 156.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds