Wall clock time and date at job start Mon Mar 8 2021 06:23:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.33320 * 125.94925 * 2 1 4 4 C 1.50705 * 122.71518 * 359.97438 * 3 2 1 5 5 O 1.42907 * 109.46426 * 329.99832 * 4 3 2 6 6 Si 1.86303 * 109.47243 * 210.00144 * 4 3 2 7 7 N 1.32127 * 114.57919 * 179.97438 * 3 2 1 8 8 C 1.29680 * 116.86558 * 359.97438 * 7 3 2 9 9 N 1.38608 * 124.95401 * 180.02562 * 8 7 3 10 10 C 1.46496 * 120.00645 * 179.97438 * 9 8 7 11 11 H 1.09003 * 112.84503 * 23.80646 * 10 9 8 12 12 C 1.53784 * 113.61730 * 154.99760 * 10 9 8 13 13 C 1.53779 * 87.08091 * 139.98514 * 12 10 9 14 14 H 1.09001 * 113.61264 * 220.02134 * 13 12 10 15 15 N 1.46503 * 113.61424 * 89.20394 * 13 12 10 16 16 C 1.34432 * 126.81967 * 275.00037 * 15 13 12 17 17 N 1.30833 * 108.07366 * 179.97438 * 16 15 13 18 18 C 1.33238 * 109.83073 * 0.02562 * 17 16 15 19 19 N 1.30721 * 108.94725 * 359.75105 * 18 17 16 20 20 C 1.53780 * 113.62046 * 252.50101 * 10 9 8 21 21 S 1.70972 * 110.10158 * 359.72329 * 8 7 3 22 22 H 1.09001 * 109.46953 * 90.00077 * 1 2 3 23 23 H 1.09000 * 109.47318 * 209.99674 * 1 2 3 24 24 H 1.09000 * 109.47161 * 330.00305 * 1 2 3 25 25 H 1.08990 * 109.47230 * 89.99619 * 4 3 2 26 26 H 0.96699 * 113.99424 * 180.02562 * 5 4 3 27 27 H 1.48494 * 109.99816 * 298.67977 * 6 4 3 28 28 H 1.48504 * 110.00164 * 59.99580 * 6 4 3 29 29 H 0.97009 * 119.99745 * 0.02562 * 9 8 7 30 30 H 1.08999 * 113.61485 * 254.53562 * 12 10 9 31 31 H 1.09002 * 113.61085 * 25.35439 * 12 10 9 32 32 H 1.07998 * 125.96361 * 359.97438 * 16 15 13 33 33 H 1.07995 * 125.52689 * 180.02562 * 18 17 16 34 34 H 1.08997 * 113.60845 * 334.56367 * 20 10 9 35 35 H 1.08993 * 113.61445 * 105.46441 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2897 1.0793 0.0000 4 6 1.7414 2.4830 -0.0006 5 8 0.4815 2.5019 -0.6748 6 14 2.9327 3.6147 -0.8787 7 7 3.5851 0.8188 0.0005 8 6 3.9315 -0.4309 0.0015 9 7 5.2385 -0.8926 0.0027 10 6 5.5066 -2.3328 0.0043 11 1 4.6808 -2.9175 -0.4011 12 6 6.8751 -2.7053 -0.5901 13 6 6.9926 -3.7465 0.5355 14 1 7.9928 -3.8162 0.9631 15 7 6.4307 -5.0538 0.1866 16 6 5.1454 -5.4328 0.2936 17 7 5.0516 -6.6709 -0.1187 18 6 6.2505 -7.1142 -0.4945 19 7 7.1270 -6.1583 -0.3308 20 6 6.0352 -2.8597 1.3489 21 16 2.5413 -1.4261 0.0096 22 1 -0.3633 0.0000 -1.0277 23 1 -0.3634 -0.8900 0.5138 24 1 -0.3633 0.8900 0.5138 25 1 1.6088 2.8217 1.0269 26 1 0.0694 3.3758 -0.7137 27 1 4.2370 3.6284 -0.1691 28 1 3.1221 3.1636 -2.2808 29 1 5.9756 -0.2620 0.0032 30 1 6.8138 -3.1440 -1.5861 31 1 7.6120 -1.9048 -0.5248 32 1 4.3321 -4.8219 0.6566 33 1 6.4630 -8.1016 -0.8769 34 1 6.5428 -2.1018 1.9455 35 1 5.2958 -3.4228 1.9182 There are 50 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 50 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_15494096_15704122.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:23:23 Heat of formation + Delta-G solvation = 151.563463 kcal Electronic energy + Delta-G solvation = -20959.384200 eV Core-core repulsion = 17703.442568 eV Total energy + Delta-G solvation = -3255.941632 eV No. of doubly occupied orbitals = 50 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 294.089 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.31337 -41.22215 -40.45707 -37.73403 -35.92841 -33.35660 -32.50187 -31.99869 -29.37426 -27.17341 -26.57752 -25.63391 -24.35740 -23.46236 -22.83513 -21.36174 -20.17032 -19.48279 -18.37851 -17.99121 -17.48112 -17.26290 -16.61749 -16.33967 -16.15404 -15.84954 -15.64315 -15.30289 -14.92023 -14.36877 -14.27679 -13.97772 -13.79888 -13.74519 -13.55505 -13.34021 -13.10139 -12.91846 -12.56897 -12.35975 -11.94702 -11.77599 -11.20493 -11.12428 -10.94001 -10.82701 -10.71038 -10.39170 -10.09746 -8.75986 -4.96346 -0.14157 0.00731 0.51173 0.60435 1.16173 1.26346 1.65231 1.74100 1.77475 1.88741 2.19294 2.85127 3.08787 3.10385 3.31469 3.35451 3.60359 3.80605 3.94106 3.98453 4.05740 4.14810 4.29377 4.40832 4.45027 4.46918 4.55508 4.66379 4.76071 4.81843 4.85221 5.04844 5.19765 5.31279 5.34513 5.46390 5.77414 6.13810 6.73242 6.94130 6.99445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 C -0.240 4.240 3 C 0.072 3.928 4 C -0.035 4.035 5 O -0.553 6.553 6 Si 0.808 3.192 7 N -0.581 5.581 8 C 0.305 3.695 9 N -0.675 5.675 10 C 0.121 3.879 11 H 0.105 0.895 12 C -0.139 4.139 13 C 0.128 3.872 14 H 0.134 0.866 15 N -0.366 5.366 16 C 0.253 3.747 17 N -0.573 5.573 18 C 0.193 3.807 19 N -0.344 5.344 20 C -0.141 4.141 21 S 0.125 5.875 22 H 0.069 0.931 23 H 0.067 0.933 24 H 0.095 0.905 25 H 0.102 0.898 26 H 0.408 0.592 27 H -0.300 1.300 28 H -0.325 1.325 29 H 0.418 0.582 30 H 0.073 0.927 31 H 0.133 0.867 32 H 0.243 0.757 33 H 0.239 0.761 34 H 0.135 0.865 35 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.379 4.007 3.054 5.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.363 4.363 3 C -0.057 4.057 4 C -0.147 4.147 5 O -0.363 6.363 6 Si 0.716 3.284 7 N -0.309 5.309 8 C -0.066 4.066 9 N -0.315 5.315 10 C 0.015 3.985 11 H 0.123 0.877 12 C -0.179 4.179 13 C 0.025 3.975 14 H 0.151 0.849 15 N -0.157 5.157 16 C -0.043 4.043 17 N -0.300 5.300 18 C -0.110 4.110 19 N -0.171 5.171 20 C -0.182 4.182 21 S 0.374 5.626 22 H 0.088 0.912 23 H 0.085 0.915 24 H 0.113 0.887 25 H 0.120 0.880 26 H 0.260 0.740 27 H -0.229 1.229 28 H -0.255 1.255 29 H 0.258 0.742 30 H 0.092 0.908 31 H 0.152 0.848 32 H 0.259 0.741 33 H 0.255 0.745 34 H 0.153 0.847 35 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 0.257 2.396 2.425 3.419 hybrid contribution 0.217 0.479 -0.014 0.526 sum 0.474 2.875 2.411 3.782 Atomic orbital electron populations 1.20138 0.85002 1.03334 1.02851 1.25521 1.02624 0.92694 1.15421 1.19450 0.86487 0.96713 1.03001 1.23966 0.93558 0.94552 1.02655 1.86426 1.33000 1.37927 1.78903 0.95311 0.76351 0.82876 0.73820 1.65760 1.18022 1.18137 1.29008 1.23565 0.93151 0.91325 0.98544 1.43971 1.01056 1.06959 1.79496 1.22927 0.98456 0.79135 0.97985 0.87690 1.23803 0.96743 0.98598 0.98707 1.22159 1.00453 0.76922 0.97959 0.84852 1.50404 1.06705 1.11425 1.47134 1.26540 0.88704 0.92838 0.96219 1.70605 1.26592 1.10886 1.21950 1.26607 0.85768 1.00711 0.97892 1.78047 1.21826 0.95546 1.21684 1.24043 0.98727 0.98563 0.96822 1.83655 0.95498 1.09704 1.73767 0.91223 0.91460 0.88676 0.88018 0.73998 1.22857 1.25483 0.74242 0.90786 0.84849 0.74106 0.74460 0.84654 0.88364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.08 8.96 71.24 0.64 0.56 16 2 C -0.24 -1.34 6.50 24.58 0.16 -1.18 16 3 C 0.07 0.55 5.95 41.40 0.25 0.80 16 4 C -0.03 -0.05 2.82 71.24 0.20 0.15 16 5 O -0.55 1.10 9.86 -148.98 -1.47 -0.37 16 6 Si 0.81 1.92 32.08 68.60 2.20 4.12 16 7 N -0.58 -5.45 8.95 -189.86 -1.70 -7.15 16 8 C 0.31 1.34 8.24 179.32 1.48 2.82 16 9 N -0.67 1.49 5.51 -327.90 -1.81 -0.32 16 10 C 0.12 -0.80 3.82 45.52 0.17 -0.63 16 11 H 0.11 -0.58 5.95 -2.39 -0.01 -0.60 16 12 C -0.14 1.03 7.63 31.12 0.24 1.27 16 13 C 0.13 -0.84 5.21 45.52 0.24 -0.61 16 14 H 0.13 -1.04 8.14 -2.39 -0.02 -1.06 16 15 N -0.37 -0.04 3.81 -328.93 -1.25 -1.29 16 16 C 0.25 -0.02 10.83 180.36 1.95 1.93 16 17 N -0.57 -3.23 11.19 -204.00 -2.28 -5.52 16 18 C 0.19 0.86 13.03 180.76 2.36 3.22 16 19 N -0.34 -1.97 12.70 -61.25 -0.78 -2.75 16 20 C -0.14 1.42 7.14 31.12 0.22 1.64 16 21 S 0.13 0.26 21.69 -56.49 -1.23 -0.96 16 22 H 0.07 0.15 8.14 -2.39 -0.02 0.13 16 23 H 0.07 -0.05 8.14 -2.39 -0.02 -0.07 16 24 H 0.09 0.00 6.62 -2.39 -0.02 -0.01 16 25 H 0.10 -0.30 7.96 -2.39 -0.02 -0.32 16 26 H 0.41 -5.23 8.74 -74.06 -0.65 -5.88 16 27 H -0.30 -3.03 7.11 99.48 0.71 -2.32 16 28 H -0.33 -4.09 7.11 99.48 0.71 -3.38 16 29 H 0.42 -1.57 8.85 -92.70 -0.82 -2.39 16 30 H 0.07 -0.25 8.14 -2.39 -0.02 -0.27 16 31 H 0.13 -1.48 8.12 -2.39 -0.02 -1.50 16 32 H 0.24 -1.89 6.76 -2.91 -0.02 -1.91 16 33 H 0.24 -0.46 8.06 -2.91 -0.02 -0.48 16 34 H 0.14 -1.68 8.14 -2.39 -0.02 -1.70 16 35 H 0.10 -1.07 7.04 -2.39 -0.02 -1.09 16 Total: 0.00 -26.41 308.94 -0.69 -27.10 By element: Atomic # 1 Polarization: -22.57 SS G_CDS: -0.28 Total: -22.85 kcal Atomic # 6 Polarization: 2.08 SS G_CDS: 7.90 Total: 9.99 kcal Atomic # 7 Polarization: -9.20 SS G_CDS: -7.82 Total: -17.02 kcal Atomic # 8 Polarization: 1.10 SS G_CDS: -1.47 Total: -0.37 kcal Atomic # 14 Polarization: 1.92 SS G_CDS: 2.20 Total: 4.12 kcal Atomic # 16 Polarization: 0.26 SS G_CDS: -1.23 Total: -0.96 kcal Total: -26.41 -0.69 -27.10 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_15494096_15704122.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 178.667 kcal (2) G-P(sol) polarization free energy of solvation -26.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 152.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.104 kcal (6) G-S(sol) free energy of system = (1) + (5) 151.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds