Wall clock time and date at job start Mon Mar 8 2021 06:23:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42890 * 1 3 3 Si 1.86299 * 109.47462 * 2 1 4 4 C 1.50701 * 109.47497 * 239.99708 * 2 1 3 5 5 C 1.37985 * 120.33034 * 119.99784 * 4 2 1 6 6 N 1.32005 * 120.90492 * 179.97438 * 5 4 2 7 7 C 1.32333 * 121.64315 * 0.02562 * 6 5 4 8 8 N 1.39150 * 119.71718 * 179.97438 * 7 6 5 9 9 C 1.46496 * 119.99742 * 359.97438 * 8 7 6 10 10 H 1.08994 * 112.91109 * 23.75163 * 9 8 7 11 11 C 1.53787 * 113.61210 * 155.00427 * 9 8 7 12 12 C 1.53779 * 87.07963 * 139.97940 * 11 9 8 13 13 H 1.08999 * 113.61062 * 219.93155 * 12 11 9 14 14 N 1.46502 * 113.61301 * 89.11687 * 12 11 9 15 15 C 1.34429 * 126.82264 * 274.70443 * 14 12 11 16 16 N 1.30829 * 108.08005 * 179.89689 * 15 14 12 17 17 C 1.33249 * 109.82777 * 0.38401 * 16 15 14 18 18 N 1.30712 * 108.94557 * 359.76049 * 17 16 15 19 19 C 1.53779 * 87.08402 * 334.56577 * 12 11 9 20 20 C 1.39343 * 120.56543 * 0.25644 * 7 6 5 21 21 F 1.35106 * 120.47232 * 179.72544 * 20 7 6 22 22 C 1.38443 * 119.05738 * 359.49075 * 20 7 6 23 23 H 0.96699 * 113.99939 * 300.00378 * 1 2 3 24 24 H 1.08999 * 109.47039 * 119.99750 * 2 1 3 25 25 H 1.48499 * 110.00609 * 178.68272 * 3 2 1 26 26 H 1.48506 * 109.99690 * 299.99738 * 3 2 1 27 27 H 1.08008 * 119.54563 * 0.02562 * 5 4 2 28 28 H 0.97002 * 119.99768 * 180.02562 * 8 7 6 29 29 H 1.08997 * 113.61028 * 254.52900 * 11 9 8 30 30 H 1.09000 * 113.61529 * 25.43039 * 11 9 8 31 31 H 1.08001 * 125.95957 * 0.04211 * 15 14 12 32 32 H 1.07994 * 125.52606 * 179.80284 * 17 16 15 33 33 H 1.09002 * 113.61557 * 270.88569 * 19 12 11 34 34 H 1.09004 * 113.61501 * 139.97990 * 19 12 11 35 35 H 1.08002 * 120.76025 * 180.24292 * 22 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7105 -1.2304 5 6 2.7250 -0.0465 -2.1432 6 7 3.1718 -0.6579 -3.2244 7 6 2.8793 -1.9235 -3.4772 8 7 3.3714 -2.5282 -4.6298 9 6 4.2089 -1.7640 -5.5574 10 1 4.7098 -0.9213 -5.0811 11 6 5.1474 -2.6398 -6.4044 12 6 4.8213 -1.7100 -7.5850 13 1 4.6940 -2.2347 -8.5318 14 7 5.7196 -0.5574 -7.6897 15 6 5.6013 0.6173 -7.0468 16 7 6.6014 1.3799 -7.4073 17 6 7.3711 0.7327 -8.2814 18 7 6.8720 -0.4579 -8.4863 19 6 3.4967 -1.3957 -6.8697 20 6 2.0779 -2.6540 -2.6021 21 9 1.7759 -3.9444 -2.8648 22 6 1.5996 -2.0401 -1.4571 23 1 -0.3933 0.4417 0.7650 24 1 1.7922 -0.5138 0.8900 25 1 3.5346 1.7703 0.0321 26 1 1.5615 2.4678 -1.2086 27 1 2.9850 0.9875 -1.9701 28 1 3.1592 -3.4556 -4.8192 29 1 6.1895 -2.5953 -6.0884 30 1 4.7884 -3.6600 -6.5400 31 1 4.8187 0.8840 -6.3520 32 1 8.2631 1.1275 -8.7449 33 1 2.6865 -2.0758 -7.1326 34 1 3.2064 -0.3467 -6.9294 35 1 0.9795 -2.5816 -0.7580 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_15494096_17656566.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:23:25 Heat of formation + Delta-G solvation = 105.281955 kcal Electronic energy + Delta-G solvation = -22782.711014 eV Core-core repulsion = 19121.693862 eV Total energy + Delta-G solvation = -3661.017152 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 292.108 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -50.05626 -43.30233 -41.59426 -40.30186 -37.86846 -35.98206 -33.53083 -33.08733 -32.21182 -31.23157 -27.18407 -27.10335 -26.06513 -24.92705 -23.28286 -22.98558 -22.59827 -21.03707 -19.41662 -18.84533 -18.37824 -18.07890 -17.96642 -17.16972 -17.01696 -16.65199 -16.43631 -16.00724 -15.67554 -15.50065 -15.11265 -15.05433 -14.73634 -14.43825 -14.17152 -14.02373 -13.83772 -13.69906 -13.28686 -13.08381 -12.66088 -12.44682 -12.09107 -11.78311 -11.39552 -11.13206 -10.95147 -10.90980 -10.83996 -10.69217 -10.24845 -8.90711 -4.91803 -0.26435 -0.02012 0.51392 1.17673 1.31935 1.68759 1.81865 1.88433 1.98722 2.35537 2.88417 2.93803 3.06912 3.19026 3.32789 3.35550 3.48366 3.60641 3.72610 3.77911 3.81850 4.01932 4.07186 4.25140 4.30421 4.39463 4.49014 4.53476 4.59337 4.61659 4.72006 4.86454 4.88707 5.19377 5.25685 5.35893 5.74958 5.81498 6.05120 6.78952 6.94256 6.99294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.565 6.565 2 C -0.064 4.064 3 Si 0.768 3.232 4 C -0.168 4.168 5 C 0.127 3.873 6 N -0.526 5.526 7 C 0.379 3.621 8 N -0.698 5.698 9 C 0.131 3.869 10 H 0.106 0.894 11 C -0.142 4.142 12 C 0.127 3.873 13 H 0.131 0.869 14 N -0.364 5.364 15 C 0.256 3.744 16 N -0.576 5.576 17 C 0.192 3.808 18 N -0.344 5.344 19 C -0.144 4.144 20 C -0.026 4.026 21 F -0.134 7.134 22 C -0.038 4.038 23 H 0.406 0.594 24 H 0.100 0.900 25 H -0.284 1.284 26 H -0.292 1.292 27 H 0.157 0.843 28 H 0.422 0.578 29 H 0.069 0.931 30 H 0.133 0.867 31 H 0.238 0.762 32 H 0.241 0.759 33 H 0.131 0.869 34 H 0.086 0.914 35 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.740 -0.913 4.916 6.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.375 6.375 2 C -0.175 4.175 3 Si 0.673 3.327 4 C -0.174 4.174 5 C -0.030 4.030 6 N -0.243 5.243 7 C 0.140 3.860 8 N -0.331 5.331 9 C 0.026 3.974 10 H 0.124 0.876 11 C -0.181 4.181 12 C 0.024 3.976 13 H 0.149 0.851 14 N -0.155 5.155 15 C -0.040 4.040 16 N -0.303 5.303 17 C -0.110 4.110 18 N -0.172 5.172 19 C -0.184 4.184 20 C -0.052 4.052 21 F -0.113 7.113 22 C -0.064 4.064 23 H 0.257 0.743 24 H 0.118 0.882 25 H -0.211 1.211 26 H -0.219 1.219 27 H 0.174 0.826 28 H 0.262 0.738 29 H 0.088 0.912 30 H 0.151 0.849 31 H 0.254 0.746 32 H 0.257 0.743 33 H 0.149 0.851 34 H 0.105 0.895 35 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -2.219 -0.407 2.872 3.652 hybrid contribution -0.561 -1.484 0.252 1.606 sum -2.780 -1.891 3.124 4.589 Atomic orbital electron populations 1.86430 1.17048 1.82442 1.51568 1.24576 0.86005 1.10638 0.96246 0.94112 0.77660 0.75531 0.85386 1.20269 1.03003 0.94578 0.99500 1.22325 0.93302 0.98987 0.88344 1.67211 1.27088 1.08020 1.22006 1.18559 0.90495 0.89018 0.87882 1.44468 1.53998 1.14787 1.19853 1.22623 0.91323 0.95619 0.87876 0.87619 1.23821 1.00529 1.00411 0.93375 1.22194 0.89008 0.84964 1.01465 0.85117 1.50400 1.19773 1.13317 1.31985 1.26466 0.98229 0.82672 0.96631 1.70608 1.07140 1.34259 1.18316 1.26616 1.00818 0.88362 0.95242 1.78021 0.99669 1.21905 1.17569 1.23989 0.95648 1.04905 0.93809 1.18090 1.06950 0.81057 0.99119 1.91490 1.92118 1.33696 1.93949 1.21496 0.95754 0.94361 0.94819 0.74283 0.88239 1.21082 1.21937 0.82642 0.73829 0.91213 0.84935 0.74568 0.74321 0.85111 0.89548 0.81765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 1.97 12.75 -148.98 -1.90 0.07 16 2 C -0.06 0.24 2.83 71.24 0.20 0.44 16 3 Si 0.77 -3.63 29.82 68.60 2.05 -1.59 16 4 C -0.17 -0.36 5.43 -19.76 -0.11 -0.46 16 5 C 0.13 0.54 9.84 84.61 0.83 1.37 16 6 N -0.53 -2.74 9.13 -193.03 -1.76 -4.50 16 7 C 0.38 1.26 7.49 133.08 1.00 2.25 16 8 N -0.70 1.39 5.51 -321.78 -1.77 -0.39 16 9 C 0.13 -0.46 3.87 45.52 0.18 -0.29 16 10 H 0.11 0.00 6.31 -2.39 -0.02 -0.01 16 11 C -0.14 0.74 7.63 31.12 0.24 0.98 16 12 C 0.13 -0.47 5.21 45.52 0.24 -0.23 16 13 H 0.13 -0.69 8.14 -2.39 -0.02 -0.71 16 14 N -0.36 -1.13 3.81 -328.94 -1.25 -2.39 16 15 C 0.26 0.91 10.82 180.36 1.95 2.87 16 16 N -0.58 -4.88 11.19 -204.00 -2.28 -7.16 16 17 C 0.19 1.27 13.03 180.76 2.36 3.63 16 18 N -0.34 -2.74 12.70 -61.25 -0.78 -3.52 16 19 C -0.14 0.92 7.14 31.12 0.22 1.14 16 20 C -0.03 -0.09 7.35 22.58 0.17 0.08 16 21 F -0.13 -0.46 16.65 44.97 0.75 0.29 16 22 C -0.04 -0.08 9.75 22.48 0.22 0.13 16 23 H 0.41 -5.60 8.74 -74.06 -0.65 -6.24 16 24 H 0.10 -0.81 7.96 -2.39 -0.02 -0.83 16 25 H -0.28 -0.18 7.11 99.48 0.71 0.53 16 26 H -0.29 -0.80 7.11 99.48 0.71 -0.09 16 27 H 0.16 0.42 4.88 -2.91 -0.01 0.41 16 28 H 0.42 -2.23 8.20 -92.71 -0.76 -2.99 16 29 H 0.07 -0.07 8.14 -2.39 -0.02 -0.09 16 30 H 0.13 -1.30 8.12 -2.39 -0.02 -1.31 16 31 H 0.24 -0.59 6.76 -2.91 -0.02 -0.61 16 32 H 0.24 -0.07 8.06 -2.91 -0.02 -0.09 16 33 H 0.13 -1.23 8.14 -2.39 -0.02 -1.25 16 34 H 0.09 -0.49 7.02 -2.39 -0.02 -0.50 16 35 H 0.16 -0.17 8.06 -2.91 -0.02 -0.19 16 Total: 0.00 -21.58 304.67 0.33 -21.25 By element: Atomic # 1 Polarization: -13.78 SS G_CDS: -0.20 Total: -13.98 kcal Atomic # 6 Polarization: 4.42 SS G_CDS: 7.49 Total: 11.91 kcal Atomic # 7 Polarization: -10.10 SS G_CDS: -7.85 Total: -17.95 kcal Atomic # 8 Polarization: 1.97 SS G_CDS: -1.90 Total: 0.07 kcal Atomic # 9 Polarization: -0.46 SS G_CDS: 0.75 Total: 0.29 kcal Atomic # 14 Polarization: -3.63 SS G_CDS: 2.05 Total: -1.59 kcal Total: -21.58 0.33 -21.25 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_15494096_17656566.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.531 kcal (2) G-P(sol) polarization free energy of solvation -21.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.249 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds