Wall clock time and date at job start Mon Mar 8 2021 07:06:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13593 * 1 3 3 C 1.43210 * 179.97438 * 2 1 4 4 C 1.39628 * 120.14685 * 252.92777 * 3 2 1 5 5 C 1.37953 * 119.84216 * 179.97438 * 4 3 2 6 6 C 1.38366 * 120.15240 * 359.97438 * 5 4 3 7 7 C 1.50693 * 119.84844 * 179.97438 * 6 5 4 8 8 H 1.09006 * 112.84864 * 348.80648 * 7 6 5 9 9 C 1.53777 * 113.61371 * 119.99983 * 7 6 5 10 10 C 1.53779 * 87.08202 * 139.98249 * 9 7 6 11 11 H 1.09002 * 113.61933 * 219.93461 * 10 9 7 12 12 N 1.46507 * 113.61543 * 89.11447 * 10 9 7 13 13 C 1.38405 * 120.00082 * 155.00085 * 12 10 9 14 14 N 1.32501 * 119.21666 * 359.72995 * 13 12 10 15 15 C 1.32274 * 120.74204 * 180.27404 * 14 13 12 16 16 C 1.38612 * 119.19367 * 0.02562 * 15 14 13 17 17 C 1.50703 * 120.71732 * 179.97438 * 16 15 14 18 18 O 1.42902 * 109.46700 * 245.02116 * 17 16 15 19 19 Si 1.86298 * 109.47354 * 5.01654 * 17 16 15 20 20 C 1.38599 * 118.55845 * 359.97438 * 16 15 14 21 21 N 1.32271 * 119.20254 * 359.97438 * 20 16 15 22 22 C 1.53777 * 113.61477 * 217.50170 * 7 6 5 23 23 C 1.38359 * 120.30111 * 0.25763 * 6 5 4 24 24 C 1.37949 * 120.15419 * 359.48883 * 23 6 5 25 25 H 1.07993 * 120.08159 * 359.97438 * 4 3 2 26 26 H 1.07996 * 119.91935 * 180.02562 * 5 4 3 27 27 H 1.09000 * 113.61274 * 25.43369 * 9 7 6 28 28 H 1.09000 * 113.61780 * 254.52699 * 9 7 6 29 29 H 0.96998 * 119.99988 * 335.00459 * 12 10 9 30 30 H 1.07993 * 120.40089 * 180.02562 * 15 14 13 31 31 H 1.08995 * 109.47079 * 125.02128 * 17 16 15 32 32 H 0.96697 * 114.00551 * 59.99612 * 18 17 16 33 33 H 1.48502 * 110.00020 * 58.68104 * 19 17 16 34 34 H 1.48493 * 109.99996 * 180.02562 * 19 17 16 35 35 H 1.08004 * 120.40191 * 180.02562 * 20 16 15 36 36 H 1.08997 * 113.61992 * 105.47275 * 22 7 6 37 37 H 1.09002 * 113.61237 * 334.56039 * 22 7 6 38 38 H 1.08002 * 119.92221 * 179.74156 * 23 6 5 39 39 H 1.08003 * 120.07855 * 180.27871 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2691 0.3554 1.1542 5 6 4.6486 0.3534 1.1474 6 6 5.3374 0.0003 0.0004 7 6 6.8444 0.0010 0.0004 8 1 7.2674 0.4777 0.8847 9 6 7.4610 -1.3723 -0.3136 10 6 8.5070 -0.6225 -1.1553 11 1 8.7603 -1.1271 -2.0877 12 7 9.6879 -0.2100 -0.3927 13 6 10.8948 -0.0105 -1.0400 14 7 10.9660 -0.2023 -2.3491 15 6 12.1054 -0.0256 -2.9974 16 6 13.2321 0.3641 -2.2904 17 6 14.5480 0.5747 -2.9942 18 8 15.4944 -0.3920 -2.5339 19 14 14.3073 0.3820 -4.8315 20 6 13.1224 0.5558 -0.9221 21 7 11.9528 0.3629 -0.3352 22 6 7.4601 0.4919 -1.3204 23 6 4.6489 -0.3477 -1.1481 24 6 3.2695 -0.3549 -1.1537 25 1 2.7328 0.6308 2.0502 26 1 5.1921 0.6272 2.0395 27 1 6.8097 -2.0192 -0.9014 28 1 7.8802 -1.8726 0.5593 29 1 9.6239 -0.0768 0.5660 30 1 12.1571 -0.1830 -4.0646 31 1 14.9185 1.5769 -2.7794 32 1 15.2294 -1.3084 -2.6924 33 1 13.3015 1.3605 -5.3174 34 1 15.5978 0.5867 -5.5370 35 1 13.9813 0.8598 -0.3421 36 1 7.8787 1.4965 -1.2603 37 1 6.8087 0.3546 -2.1835 38 1 5.1928 -0.6182 -2.0411 39 1 2.7333 -0.6311 -2.0497 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_15505406_12175864.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:06:52 Heat of formation + Delta-G solvation = 120.442665 kcal Electronic energy + Delta-G solvation = -23211.952619 eV Core-core repulsion = 19701.794350 eV Total energy + Delta-G solvation = -3510.158269 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 309.122 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.12550 -41.18295 -39.53407 -37.97041 -37.47316 -35.45541 -34.69681 -32.69231 -32.04337 -31.43890 -27.18229 -26.63760 -26.19708 -25.70552 -23.78152 -23.40674 -22.94103 -20.35724 -19.84532 -19.51715 -18.48011 -17.94906 -17.14970 -16.60568 -16.54499 -16.14188 -15.96232 -15.71540 -15.61652 -15.43010 -15.15315 -14.79831 -14.62067 -14.48193 -14.27497 -14.09942 -14.03369 -13.77835 -13.40741 -13.19241 -13.11385 -12.95192 -12.24710 -12.18288 -11.88611 -11.85987 -11.77866 -11.72192 -11.18356 -11.06353 -10.49613 -10.01146 -9.93956 -9.64897 -9.05935 -4.97115 -0.22191 0.08142 0.16223 0.43641 1.34866 1.57336 1.67100 1.83446 1.89219 2.02133 2.81258 2.85786 2.87088 3.18274 3.54804 3.57593 3.66843 3.72754 3.75916 3.80218 3.85221 3.94780 3.99754 4.06767 4.26636 4.30552 4.43362 4.53546 4.58808 4.71846 4.79097 4.82856 4.88633 4.91977 5.01733 5.11917 5.15426 5.19633 5.30070 5.38061 5.42610 5.66778 5.84813 5.90083 6.09705 6.40578 6.43713 6.81548 7.30319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.476 5.476 2 C 0.277 3.723 3 C -0.055 4.055 4 C -0.069 4.069 5 C -0.120 4.120 6 C -0.037 4.037 7 C -0.074 4.074 8 H 0.106 0.894 9 C -0.125 4.125 10 C 0.132 3.868 11 H 0.105 0.895 12 N -0.674 5.674 13 C 0.555 3.445 14 N -0.573 5.573 15 C 0.196 3.804 16 C -0.289 4.289 17 C -0.048 4.048 18 O -0.555 6.555 19 Si 0.769 3.231 20 C 0.211 3.789 21 N -0.591 5.591 22 C -0.141 4.141 23 C -0.118 4.118 24 C -0.066 4.066 25 H 0.140 0.860 26 H 0.149 0.851 27 H 0.112 0.888 28 H 0.081 0.919 29 H 0.418 0.582 30 H 0.190 0.810 31 H 0.112 0.888 32 H 0.395 0.605 33 H -0.283 1.283 34 H -0.298 1.298 35 H 0.180 0.820 36 H 0.059 0.941 37 H 0.109 0.891 38 H 0.155 0.845 39 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.854 -2.824 -1.501 5.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.152 5.152 2 C -0.037 4.037 3 C -0.058 4.058 4 C -0.089 4.089 5 C -0.138 4.138 6 C -0.038 4.038 7 C -0.092 4.092 8 H 0.124 0.876 9 C -0.163 4.163 10 C 0.026 3.974 11 H 0.123 0.877 12 N -0.310 5.310 13 C 0.198 3.802 14 N -0.295 5.295 15 C 0.029 3.971 16 C -0.297 4.297 17 C -0.159 4.159 18 O -0.363 6.363 19 Si 0.675 3.325 20 C 0.044 3.956 21 N -0.313 5.313 22 C -0.180 4.180 23 C -0.136 4.136 24 C -0.087 4.087 25 H 0.157 0.843 26 H 0.167 0.833 27 H 0.131 0.869 28 H 0.099 0.901 29 H 0.256 0.744 30 H 0.206 0.794 31 H 0.130 0.870 32 H 0.245 0.755 33 H -0.210 1.210 34 H -0.226 1.226 35 H 0.197 0.803 36 H 0.078 0.922 37 H 0.127 0.873 38 H 0.173 0.827 39 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 2.377 -2.129 -1.709 3.620 hybrid contribution 0.984 0.877 0.629 1.461 sum 3.361 -1.252 -1.080 3.746 Atomic orbital electron populations 1.81313 1.13845 1.10939 1.09128 1.26194 0.93125 0.92152 0.92276 1.16158 0.82864 1.09247 0.97545 1.21348 0.94847 0.96129 0.96619 1.21244 0.93088 1.00240 0.99254 1.20135 0.95628 0.94740 0.93257 1.21689 0.89808 0.98201 0.99511 0.87563 1.23431 0.96431 0.95727 1.00755 1.21918 0.83040 0.96324 0.96089 0.87730 1.43916 1.04579 1.72069 1.10419 1.19627 0.87123 0.87623 0.85850 1.67952 1.29106 1.24164 1.08309 1.23188 0.86110 0.87354 1.00484 1.21758 0.98935 1.11937 0.97047 1.24803 0.86405 0.95168 1.09551 1.86482 1.45112 1.19810 1.84888 0.93984 0.77792 0.88675 0.72058 1.23112 0.93563 0.86848 0.92084 1.67990 1.00377 1.21946 1.41023 1.23616 0.97663 0.98810 0.97925 1.21195 0.92944 1.00212 0.99236 1.21364 0.94813 0.95941 0.96562 0.84261 0.83290 0.86948 0.90073 0.74357 0.79397 0.87032 0.75534 1.21025 1.22598 0.80338 0.92172 0.87309 0.82711 0.83920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -5.60 18.54 19.01 0.35 -5.25 16 2 C 0.28 1.45 15.33 88.34 1.35 2.81 16 3 C -0.05 0.06 5.73 -21.36 -0.12 -0.06 16 4 C -0.07 0.27 9.76 22.54 0.22 0.49 16 5 C -0.12 0.78 9.69 22.23 0.22 1.00 16 6 C -0.04 0.27 5.30 -19.81 -0.10 0.16 16 7 C -0.07 0.67 3.85 -11.02 -0.04 0.63 16 8 H 0.11 -1.03 8.09 -2.38 -0.02 -1.05 16 9 C -0.13 1.19 7.29 31.12 0.23 1.42 16 10 C 0.13 -0.80 4.34 45.52 0.20 -0.60 16 11 H 0.10 -0.44 7.36 -2.39 -0.02 -0.46 16 12 N -0.67 1.63 5.41 -327.90 -1.77 -0.14 16 13 C 0.55 1.43 8.43 261.48 2.20 3.63 16 14 N -0.57 -0.97 9.13 -197.98 -1.81 -2.78 16 15 C 0.20 -0.40 9.92 84.72 0.84 0.44 16 16 C -0.29 0.61 5.36 -19.69 -0.11 0.50 16 17 C -0.05 0.19 2.83 71.24 0.20 0.39 16 18 O -0.56 1.73 12.85 -148.98 -1.91 -0.18 16 19 Si 0.77 -4.13 29.88 68.60 2.05 -2.08 16 20 C 0.21 0.15 10.99 84.71 0.93 1.08 16 21 N -0.59 -2.28 10.46 -197.99 -2.07 -4.35 16 22 C -0.14 1.03 7.25 31.12 0.23 1.25 16 23 C -0.12 0.89 8.60 22.23 0.19 1.08 16 24 C -0.07 0.31 9.76 22.54 0.22 0.53 16 25 H 0.14 -0.80 8.06 -2.91 -0.02 -0.83 16 26 H 0.15 -1.49 8.05 -2.91 -0.02 -1.51 16 27 H 0.11 -1.25 7.73 -2.39 -0.02 -1.27 16 28 H 0.08 -0.74 8.14 -2.39 -0.02 -0.76 16 29 H 0.42 -1.84 8.82 -92.71 -0.82 -2.66 16 30 H 0.19 -1.49 5.07 -2.91 -0.01 -1.51 16 31 H 0.11 -0.38 7.96 -2.39 -0.02 -0.39 16 32 H 0.39 -4.24 8.70 -74.06 -0.64 -4.88 16 33 H -0.28 0.15 7.11 99.48 0.71 0.86 16 34 H -0.30 -0.80 7.11 99.48 0.71 -0.10 16 35 H 0.18 -0.45 8.06 -2.91 -0.02 -0.47 16 36 H 0.06 -0.22 8.14 -2.39 -0.02 -0.24 16 37 H 0.11 -1.02 6.28 -2.39 -0.01 -1.04 16 38 H 0.16 -1.82 6.62 -2.91 -0.02 -1.84 16 39 H 0.14 -1.00 8.06 -2.91 -0.02 -1.02 16 Total: 0.00 -20.36 340.03 1.18 -19.18 By element: Atomic # 1 Polarization: -18.85 SS G_CDS: -0.30 Total: -19.15 kcal Atomic # 6 Polarization: 8.10 SS G_CDS: 6.65 Total: 14.75 kcal Atomic # 7 Polarization: -7.22 SS G_CDS: -5.30 Total: -12.52 kcal Atomic # 8 Polarization: 1.73 SS G_CDS: -1.91 Total: -0.18 kcal Atomic # 14 Polarization: -4.13 SS G_CDS: 2.05 Total: -2.08 kcal Total: -20.36 1.18 -19.18 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_15505406_12175864.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.623 kcal (2) G-P(sol) polarization free energy of solvation -20.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.181 kcal (6) G-S(sol) free energy of system = (1) + (5) 120.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds