Wall clock time and date at job start Mon Mar 8 2021 07:06:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.43207 * 179.97438 * 2 1 4 4 C 1.39630 * 120.15178 * 332.93847 * 3 2 1 5 5 C 1.37951 * 119.84317 * 180.02562 * 4 3 2 6 6 C 1.38357 * 120.15101 * 0.02832 * 5 4 3 7 7 C 1.50707 * 119.84476 * 179.97438 * 6 5 4 8 8 H 1.08997 * 112.85069 * 348.79965 * 7 6 5 9 9 C 1.53782 * 113.61258 * 120.00017 * 7 6 5 10 10 C 1.53786 * 87.07909 * 140.06349 * 9 7 6 11 11 H 1.09002 * 113.61357 * 220.01470 * 10 9 7 12 12 N 1.46497 * 113.61643 * 89.19525 * 10 9 7 13 13 C 1.39002 * 120.00361 * 156.52635 * 12 10 9 14 14 N 1.32396 * 119.71093 * 179.72997 * 13 12 10 15 15 C 1.31966 * 121.62145 * 179.71214 * 14 13 12 16 16 C 1.38016 * 120.86004 * 0.56362 * 15 14 13 17 17 C 1.50698 * 120.34061 * 179.70241 * 16 15 14 18 18 O 1.42901 * 109.47495 * 120.02283 * 17 16 15 19 19 Si 1.86303 * 109.46979 * 0.02562 * 17 16 15 20 20 C 1.38889 * 119.32786 * 359.72715 * 16 15 14 21 21 C 1.38296 * 118.50591 * 359.97438 * 20 16 15 22 22 C 1.53781 * 87.17350 * 334.60554 * 10 9 7 23 23 C 1.38363 * 120.30577 * 0.23082 * 6 5 4 24 24 C 1.37945 * 120.15178 * 359.48807 * 23 6 5 25 25 H 1.08000 * 120.08003 * 0.05057 * 4 3 2 26 26 H 1.07995 * 119.92076 * 179.97438 * 5 4 3 27 27 H 1.08993 * 113.61979 * 25.51447 * 9 7 6 28 28 H 1.09000 * 113.68722 * 254.62115 * 9 7 6 29 29 H 0.97006 * 120.00058 * 336.53149 * 12 10 9 30 30 H 1.08002 * 119.57220 * 180.28723 * 15 14 13 31 31 H 1.09007 * 109.47050 * 240.02742 * 17 16 15 32 32 H 0.96699 * 113.99656 * 300.00121 * 18 17 16 33 33 H 1.48500 * 110.00126 * 180.02562 * 19 17 16 34 34 H 1.48504 * 109.99787 * 301.32018 * 19 17 16 35 35 H 1.07996 * 120.74748 * 179.97438 * 20 16 15 36 36 H 1.07998 * 120.45114 * 179.97438 * 21 20 16 37 37 H 1.09001 * 113.61695 * 139.93969 * 22 10 9 38 38 H 1.08997 * 113.61223 * 270.84552 * 22 10 9 39 39 H 1.08006 * 119.92181 * 179.73094 * 23 6 5 40 40 H 1.08001 * 120.07404 * 180.26277 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2699 -1.0742 0.5493 5 6 4.6494 -1.0668 0.5464 6 6 5.3374 0.0028 0.0014 7 6 6.8444 0.0040 0.0024 8 1 7.2680 -0.7846 0.6243 9 6 7.4613 0.0775 -1.4043 10 6 8.5077 1.0348 -0.8098 11 1 8.7606 1.8675 -1.4663 12 7 9.6890 0.3538 -0.2742 13 6 10.8934 1.0381 -0.1589 14 7 11.9559 0.4185 0.3310 15 6 13.1190 1.0302 0.4518 16 6 13.2664 2.3509 0.0794 17 6 14.5983 3.0399 0.2286 18 8 15.0489 3.4881 -1.0513 19 14 15.8387 1.8459 0.9405 20 6 12.1745 3.0389 -0.4340 21 6 10.9701 2.3699 -0.5546 22 6 7.4629 1.3900 0.2612 23 6 4.6482 1.0736 -0.5397 24 6 3.2688 1.0766 -0.5487 25 1 2.7340 -1.9097 0.9751 26 1 5.1935 -1.8973 0.9713 27 1 6.8105 0.5459 -2.1426 28 1 7.8803 -0.8680 -1.7487 29 1 9.6307 -0.5749 0.0001 30 1 13.9655 0.4915 0.8515 31 1 14.4923 3.8949 0.8965 32 1 15.1656 2.7785 -1.6978 33 1 17.1564 2.5133 1.0932 34 1 15.3664 1.3479 2.2574 35 1 12.2639 4.0730 -0.7322 36 1 10.1008 2.8746 -0.9494 37 1 7.8829 1.5020 1.2608 38 1 6.8125 2.2179 -0.0210 39 1 5.1915 1.9073 -0.9596 40 1 2.7321 1.9111 -0.9752 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_15505406_13915762.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:06:54 Heat of formation + Delta-G solvation = 103.453639 kcal Electronic energy + Delta-G solvation = -23062.452253 eV Core-core repulsion = 19616.983196 eV Total energy + Delta-G solvation = -3445.469058 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 308.127 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.63217 -40.96374 -39.49414 -37.86928 -37.45112 -35.28299 -33.38176 -32.37853 -32.00323 -30.86783 -27.07753 -26.62650 -25.93960 -24.79892 -23.77066 -23.30999 -22.42973 -20.20406 -19.80622 -18.89013 -18.38411 -17.37092 -17.07176 -16.58750 -16.44761 -16.05386 -15.86347 -15.62033 -15.45933 -15.27603 -15.11044 -14.63151 -14.54311 -14.32951 -14.26466 -14.02626 -13.96477 -13.76508 -13.38766 -13.28644 -13.16129 -12.93446 -12.36639 -12.15807 -12.09849 -11.80342 -11.73713 -11.15369 -10.99108 -10.69494 -10.37031 -10.34475 -9.94511 -9.64870 -8.63746 -4.97423 -0.22511 0.26708 0.43034 0.44602 1.36564 1.56867 1.65150 1.88739 1.99142 2.12480 2.85117 2.85776 2.87938 3.52334 3.58698 3.66165 3.72172 3.77501 3.82775 3.93847 3.99194 4.03756 4.05683 4.14375 4.27881 4.40750 4.44250 4.52195 4.55230 4.66483 4.80033 4.82511 4.88779 4.91718 5.01266 5.06841 5.13803 5.15666 5.24806 5.31467 5.37719 5.39723 5.60302 5.68218 5.89685 6.12447 6.40152 6.59548 6.82482 7.19401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.476 5.476 2 C 0.276 3.724 3 C -0.055 4.055 4 C -0.069 4.069 5 C -0.122 4.122 6 C -0.037 4.037 7 C -0.075 4.075 8 H 0.103 0.897 9 C -0.126 4.126 10 C 0.126 3.874 11 H 0.108 0.892 12 N -0.702 5.702 13 C 0.398 3.602 14 N -0.566 5.566 15 C 0.145 3.855 16 C -0.238 4.238 17 C -0.053 4.053 18 O -0.557 6.557 19 Si 0.764 3.236 20 C -0.014 4.014 21 C -0.239 4.239 22 C -0.146 4.146 23 C -0.118 4.118 24 C -0.067 4.067 25 H 0.139 0.861 26 H 0.148 0.852 27 H 0.113 0.887 28 H 0.078 0.922 29 H 0.407 0.593 30 H 0.165 0.835 31 H 0.107 0.893 32 H 0.394 0.606 33 H -0.298 1.298 34 H -0.287 1.287 35 H 0.144 0.856 36 H 0.154 0.846 37 H 0.063 0.937 38 H 0.111 0.889 39 H 0.158 0.842 40 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.130 -0.582 -2.963 5.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.152 5.152 2 C -0.038 4.038 3 C -0.058 4.058 4 C -0.090 4.090 5 C -0.140 4.140 6 C -0.038 4.038 7 C -0.093 4.093 8 H 0.121 0.879 9 C -0.164 4.164 10 C 0.020 3.980 11 H 0.126 0.874 12 N -0.333 5.333 13 C 0.162 3.838 14 N -0.283 5.283 15 C -0.012 4.012 16 C -0.243 4.243 17 C -0.164 4.164 18 O -0.364 6.364 19 Si 0.671 3.329 20 C -0.040 4.040 21 C -0.264 4.264 22 C -0.184 4.184 23 C -0.135 4.135 24 C -0.087 4.087 25 H 0.156 0.844 26 H 0.165 0.835 27 H 0.131 0.869 28 H 0.097 0.903 29 H 0.243 0.757 30 H 0.182 0.818 31 H 0.124 0.876 32 H 0.244 0.756 33 H -0.226 1.226 34 H -0.215 1.215 35 H 0.162 0.838 36 H 0.171 0.829 37 H 0.082 0.918 38 H 0.130 0.870 39 H 0.175 0.825 40 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 2.630 -0.951 -1.846 3.351 hybrid contribution -0.231 0.783 0.318 0.876 sum 2.399 -0.168 -1.528 2.850 Atomic orbital electron populations 1.81317 1.13857 1.09393 1.10674 1.26206 0.93140 0.92260 0.92175 1.16161 0.82852 0.99275 1.07561 1.21344 0.94855 0.96569 0.96214 1.21240 0.93094 0.99461 1.00166 1.20153 0.95724 0.93420 0.94455 1.21696 0.89655 0.99299 0.98691 0.87928 1.23407 0.96511 1.00513 0.95966 1.21997 0.83554 0.96623 0.95866 0.87378 1.44268 1.05701 1.14521 1.68824 1.18619 0.86495 0.89087 0.89638 1.67131 0.99944 1.39822 1.21415 1.22417 0.93904 0.91288 0.93610 1.21030 0.98119 0.96160 1.08987 1.24813 0.96690 1.04600 0.90326 1.86452 1.88493 1.39119 1.22363 0.93877 0.74929 0.82377 0.81688 1.21396 0.90813 1.00191 0.91550 1.21709 1.00590 0.94391 1.09686 1.23714 0.97766 0.97118 0.99834 1.21201 0.92884 0.99355 1.00084 1.21374 0.94890 0.96420 0.96015 0.84356 0.83457 0.86883 0.90287 0.75677 0.81825 0.87610 0.75606 1.22580 1.21460 0.83800 0.82882 0.91814 0.87044 0.82480 0.83900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -5.48 18.54 19.01 0.35 -5.13 16 2 C 0.28 1.37 15.33 88.33 1.35 2.72 16 3 C -0.05 0.09 5.73 -21.36 -0.12 -0.03 16 4 C -0.07 0.29 9.76 22.54 0.22 0.51 16 5 C -0.12 0.83 9.69 22.23 0.22 1.04 16 6 C -0.04 0.30 5.30 -19.80 -0.10 0.19 16 7 C -0.08 0.76 3.86 -10.95 -0.04 0.72 16 8 H 0.10 -1.02 8.09 -2.39 -0.02 -1.04 16 9 C -0.13 1.41 7.29 31.12 0.23 1.64 16 10 C 0.13 -1.18 4.07 45.52 0.19 -1.00 16 11 H 0.11 -1.17 6.17 -2.39 -0.01 -1.19 16 12 N -0.70 3.17 5.44 -322.04 -1.75 1.41 16 13 C 0.40 0.19 7.65 133.07 1.02 1.20 16 14 N -0.57 -2.07 10.39 -193.27 -2.01 -4.08 16 15 C 0.14 0.16 9.84 84.62 0.83 0.99 16 16 C -0.24 0.06 5.40 -19.76 -0.11 -0.05 16 17 C -0.05 0.07 2.84 71.24 0.20 0.27 16 18 O -0.56 0.53 12.78 -148.98 -1.90 -1.38 16 19 Si 0.76 -1.75 29.82 68.60 2.05 0.30 16 20 C -0.01 0.01 9.77 22.44 0.22 0.23 16 21 C -0.24 0.42 9.28 22.50 0.21 0.62 16 22 C -0.15 1.44 7.27 31.18 0.23 1.66 16 23 C -0.12 1.02 8.60 22.23 0.19 1.21 16 24 C -0.07 0.36 9.76 22.54 0.22 0.58 16 25 H 0.14 -0.81 8.06 -2.91 -0.02 -0.83 16 26 H 0.15 -1.47 8.05 -2.91 -0.02 -1.50 16 27 H 0.11 -1.48 7.73 -2.39 -0.02 -1.49 16 28 H 0.08 -0.80 8.14 -2.39 -0.02 -0.82 16 29 H 0.41 -2.00 8.83 -92.70 -0.82 -2.82 16 30 H 0.17 -0.43 4.88 -2.91 -0.01 -0.44 16 31 H 0.11 -0.04 7.96 -2.38 -0.02 -0.06 16 32 H 0.39 -3.39 8.70 -74.06 -0.64 -4.03 16 33 H -0.30 -1.52 7.11 99.48 0.71 -0.82 16 34 H -0.29 -0.81 7.11 99.48 0.71 -0.10 16 35 H 0.14 -0.44 8.06 -2.91 -0.02 -0.46 16 36 H 0.15 -0.98 6.06 -2.91 -0.02 -1.00 16 37 H 0.06 -0.39 8.14 -2.39 -0.02 -0.41 16 38 H 0.11 -1.40 6.31 -2.39 -0.02 -1.42 16 39 H 0.16 -2.12 6.64 -2.91 -0.02 -2.14 16 40 H 0.14 -1.11 8.06 -2.91 -0.02 -1.13 16 Total: 0.00 -19.40 342.46 1.36 -18.04 By element: Atomic # 1 Polarization: -21.36 SS G_CDS: -0.32 Total: -21.68 kcal Atomic # 6 Polarization: 7.58 SS G_CDS: 4.94 Total: 12.52 kcal Atomic # 7 Polarization: -4.39 SS G_CDS: -3.41 Total: -7.80 kcal Atomic # 8 Polarization: 0.53 SS G_CDS: -1.90 Total: -1.38 kcal Atomic # 14 Polarization: -1.75 SS G_CDS: 2.05 Total: 0.30 kcal Total: -19.40 1.36 -18.04 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_15505406_13915762.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.495 kcal (2) G-P(sol) polarization free energy of solvation -19.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.041 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds