Wall clock time and date at job start Mon Mar 8 2021 07:06:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.39631 * 120.15572 * 314.97787 * 3 2 1 5 5 C 1.37941 * 119.84942 * 180.02562 * 4 3 2 6 6 C 1.38360 * 120.15159 * 359.97036 * 5 4 3 7 7 C 1.50700 * 119.84537 * 180.02562 * 6 5 4 8 8 H 1.09004 * 112.90982 * 348.74695 * 7 6 5 9 9 C 1.53781 * 113.61477 * 120.00303 * 7 6 5 10 10 C 1.53784 * 87.07925 * 139.97965 * 9 7 6 11 11 H 1.09008 * 113.61280 * 219.93771 * 10 9 7 12 12 N 1.46499 * 113.61746 * 89.11984 * 10 9 7 13 13 C 1.38608 * 120.00285 * 154.99364 * 12 10 9 14 14 N 1.29684 * 124.95073 * 0.02562 * 13 12 10 15 15 C 1.32115 * 116.86689 * 179.97438 * 14 13 12 16 16 C 1.33323 * 114.58156 * 359.97438 * 15 14 13 17 17 C 1.50700 * 125.95232 * 180.26731 * 16 15 14 18 18 O 1.42905 * 109.47287 * 299.71369 * 17 16 15 19 19 Si 1.86297 * 109.47076 * 179.71596 * 17 16 15 20 20 S 1.70962 * 124.94713 * 179.97438 * 13 12 10 21 21 C 1.53777 * 87.08605 * 334.56646 * 10 9 7 22 22 C 1.38365 * 120.30452 * 0.28334 * 6 5 4 23 23 C 1.37945 * 120.15001 * 359.48630 * 22 6 5 24 24 H 1.08008 * 120.07031 * 359.97438 * 4 3 2 25 25 H 1.07999 * 119.92051 * 179.97438 * 5 4 3 26 26 H 1.09003 * 113.61103 * 25.43446 * 9 7 6 27 27 H 1.08997 * 113.69126 * 254.53881 * 9 7 6 28 28 H 0.97003 * 119.99402 * 335.00171 * 12 10 9 29 29 H 1.08005 * 122.70872 * 180.02562 * 15 14 13 30 30 H 1.08994 * 109.47160 * 59.71554 * 17 16 15 31 31 H 0.96695 * 113.99654 * 180.02562 * 18 17 16 32 32 H 1.48499 * 110.00196 * 298.68173 * 19 17 16 33 33 H 1.48500 * 110.00248 * 59.99974 * 19 17 16 34 34 H 1.08992 * 113.61530 * 139.97814 * 21 10 9 35 35 H 1.09001 * 113.61556 * 270.88968 * 21 10 9 36 36 H 1.08001 * 119.91912 * 179.71855 * 22 6 5 37 37 H 1.08000 * 120.07781 * 180.25912 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2698 -0.8524 0.8540 5 6 4.6492 -0.8462 0.8492 6 6 5.3374 0.0023 0.0002 7 6 6.8444 0.0030 0.0002 8 1 7.2690 -0.5542 0.8353 9 6 7.4606 -0.3620 -1.3606 10 6 8.5064 0.7331 -1.0923 11 1 8.7591 1.3211 -1.9746 12 7 9.6877 0.2525 -0.3714 13 6 10.8962 0.9192 -0.4988 14 7 11.0892 1.9748 -1.2270 15 6 12.3090 2.4823 -1.2314 16 6 13.1857 1.8253 -0.4717 17 6 14.6378 2.1829 -0.2856 18 8 15.3044 2.1411 -1.5489 19 14 15.4335 0.9638 0.8770 20 16 12.3493 0.4705 0.2823 21 6 7.4598 1.4003 -0.1843 22 6 4.6483 0.8540 -0.8449 23 6 3.2689 0.8547 -0.8538 24 1 2.7338 -1.5150 1.5175 25 1 5.1932 -1.5053 1.5096 26 1 6.8089 -0.1453 -2.2072 27 1 7.8803 -1.3673 -1.3959 28 1 9.6241 -0.5325 0.1949 29 1 12.5743 3.3590 -1.8036 30 1 14.7141 3.1866 0.1325 31 1 16.2451 2.3607 -1.5046 32 1 14.7699 1.0202 2.2042 33 1 15.3361 -0.4087 0.3184 34 1 7.8786 1.8173 0.7315 35 1 6.8079 2.0985 -0.7093 36 1 5.1918 1.5170 -1.5018 37 1 2.7323 1.5170 -1.5170 There are 53 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 53 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_15505406_15704118.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:06:57 Heat of formation + Delta-G solvation = 108.676625 kcal Electronic energy + Delta-G solvation = -21628.847224 eV Core-core repulsion = 18272.756898 eV Total energy + Delta-G solvation = -3356.090325 eV No. of doubly occupied orbitals = 53 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 314.083 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.62966 -40.62213 -39.58825 -37.83211 -37.33647 -35.37908 -32.50970 -32.20159 -31.20740 -27.29835 -26.92500 -26.36905 -24.66108 -23.94550 -23.39765 -21.32819 -20.25403 -20.01629 -19.27438 -18.50925 -17.86614 -17.10675 -16.83830 -16.46553 -15.99203 -15.79607 -15.75966 -15.40096 -15.11002 -14.97507 -14.75270 -14.58483 -14.37188 -14.24264 -14.15402 -13.71895 -13.70102 -13.31296 -13.10268 -12.84119 -12.45844 -12.43159 -12.11886 -12.01767 -12.00704 -11.43163 -11.13614 -10.66244 -10.34135 -10.16798 -10.16441 -9.81496 -8.78573 -5.23720 -0.35610 -0.07582 0.05175 0.20316 0.62813 1.20593 1.55439 1.70243 1.87833 1.90297 2.00404 2.02274 2.76328 2.85528 3.23470 3.40920 3.44164 3.50283 3.63084 3.67057 3.75400 3.78331 3.94584 4.02491 4.16580 4.31190 4.39184 4.45832 4.53744 4.60967 4.63195 4.72406 4.75312 4.83782 4.87826 4.91507 5.08257 5.17785 5.19457 5.41632 5.66289 5.80698 5.98031 6.50958 6.56514 6.96272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.413 5.413 2 C 0.250 3.750 3 C -0.033 4.033 4 C -0.066 4.066 5 C -0.117 4.117 6 C -0.041 4.041 7 C -0.080 4.080 8 H 0.100 0.900 9 C -0.136 4.136 10 C 0.135 3.865 11 H 0.109 0.891 12 N -0.676 5.676 13 C 0.331 3.669 14 N -0.544 5.544 15 C 0.123 3.877 16 C -0.260 4.260 17 C -0.017 4.017 18 O -0.545 6.545 19 Si 0.668 3.332 20 S 0.070 5.930 21 C -0.145 4.145 22 C -0.118 4.118 23 C -0.066 4.066 24 H 0.133 0.867 25 H 0.133 0.867 26 H 0.103 0.897 27 H 0.079 0.921 28 H 0.414 0.586 29 H 0.179 0.821 30 H 0.082 0.918 31 H 0.383 0.617 32 H -0.242 1.242 33 H -0.239 1.239 34 H 0.076 0.924 35 H 0.099 0.901 36 H 0.135 0.865 37 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.160 0.105 1.626 7.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.088 5.088 2 C -0.065 4.065 3 C -0.036 4.036 4 C -0.087 4.087 5 C -0.135 4.135 6 C -0.041 4.041 7 C -0.098 4.098 8 H 0.118 0.882 9 C -0.174 4.174 10 C 0.027 3.973 11 H 0.127 0.873 12 N -0.314 5.314 13 C -0.039 4.039 14 N -0.269 5.269 15 C -0.027 4.027 16 C -0.383 4.383 17 C -0.131 4.131 18 O -0.352 6.352 19 Si 0.567 3.433 20 S 0.319 5.681 21 C -0.184 4.184 22 C -0.136 4.136 23 C -0.086 4.086 24 H 0.151 0.849 25 H 0.151 0.849 26 H 0.121 0.879 27 H 0.097 0.903 28 H 0.252 0.748 29 H 0.196 0.804 30 H 0.100 0.900 31 H 0.231 0.769 32 H -0.166 1.166 33 H -0.163 1.163 34 H 0.095 0.905 35 H 0.117 0.883 36 H 0.153 0.847 37 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 4.377 -1.298 2.218 5.076 hybrid contribution 0.085 0.641 -0.377 0.749 sum 4.462 -0.657 1.841 4.871 Atomic orbital electron populations 1.81310 1.12080 1.07715 1.07704 1.25747 0.92708 0.94038 0.94043 1.16018 0.84335 1.01640 1.01607 1.21212 0.94302 0.96595 0.96591 1.21013 0.93468 0.99502 0.99484 1.19950 0.95128 0.94522 0.94545 1.21714 0.90563 0.98707 0.98862 0.88150 1.23475 0.97129 0.99561 0.97240 1.21910 0.83378 0.96345 0.95623 0.87281 1.43700 1.04501 1.31309 1.51926 1.23760 0.91745 0.93325 0.95058 1.66455 1.22754 1.12176 1.25548 1.21346 0.85246 0.99751 0.96385 1.24289 0.99896 1.02124 1.11947 1.23677 0.89591 1.06774 0.93041 1.86514 1.26659 1.93333 1.28674 0.95118 0.90013 0.79766 0.78386 1.84110 1.02906 1.31441 1.49678 1.23633 0.97684 0.95817 1.01241 1.20977 0.93386 0.99547 0.99698 1.21206 0.94252 0.96573 0.96586 0.84866 0.84934 0.87896 0.90267 0.74837 0.80411 0.90012 0.76874 1.16605 1.16263 0.90517 0.88313 0.84685 0.84800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -2.12 18.54 41.84 0.78 -1.35 16 2 C 0.25 0.55 15.33 -22.47 -0.34 0.21 16 3 C -0.03 0.02 5.73 -106.93 -0.61 -0.60 16 4 C -0.07 0.11 9.76 -39.17 -0.38 -0.27 16 5 C -0.12 0.30 9.69 -39.65 -0.38 -0.08 16 6 C -0.04 0.11 5.30 -104.53 -0.55 -0.44 16 7 C -0.08 0.29 3.85 -90.95 -0.35 -0.06 16 8 H 0.10 -0.44 8.09 -51.93 -0.42 -0.86 16 9 C -0.14 0.49 7.29 -25.92 -0.19 0.30 16 10 C 0.14 -0.27 4.44 -67.12 -0.30 -0.56 16 11 H 0.11 -0.04 7.66 -51.92 -0.40 -0.44 16 12 N -0.68 0.73 5.42 -54.99 -0.30 0.43 16 13 C 0.33 0.59 8.09 -87.68 -0.71 -0.12 16 14 N -0.54 -1.81 9.83 -15.21 -0.15 -1.96 16 15 C 0.12 0.33 11.22 -19.15 -0.21 0.12 16 16 C -0.26 -0.59 5.78 -36.02 -0.21 -0.79 16 17 C -0.02 0.01 2.98 36.01 0.11 0.11 16 18 O -0.55 0.11 12.85 -35.23 -0.45 -0.35 16 19 Si 0.67 -0.74 31.05 -169.99 -5.28 -6.02 16 20 S 0.07 0.13 20.57 -107.50 -2.21 -2.08 16 21 C -0.14 0.40 7.25 -25.92 -0.19 0.21 16 22 C -0.12 0.32 8.60 -39.64 -0.34 -0.02 16 23 C -0.07 0.12 9.76 -39.17 -0.38 -0.27 16 24 H 0.13 -0.38 8.06 -52.48 -0.42 -0.80 16 25 H 0.13 -0.57 8.05 -52.49 -0.42 -0.99 16 26 H 0.10 -0.40 7.73 -51.93 -0.40 -0.81 16 27 H 0.08 -0.29 8.14 -51.93 -0.42 -0.71 16 28 H 0.41 -1.30 8.83 -40.82 -0.36 -1.66 16 29 H 0.18 0.19 8.06 -52.48 -0.42 -0.24 16 30 H 0.08 -0.18 7.96 -51.93 -0.41 -0.60 16 31 H 0.38 -2.05 8.74 45.56 0.40 -1.65 16 32 H -0.24 -0.28 7.11 56.52 0.40 0.12 16 33 H -0.24 -0.51 7.11 56.52 0.40 -0.10 16 34 H 0.08 -0.12 8.14 -51.93 -0.42 -0.54 16 35 H 0.10 -0.33 6.28 -51.93 -0.33 -0.65 16 36 H 0.14 -0.58 6.62 -52.49 -0.35 -0.92 16 37 H 0.13 -0.39 8.06 -52.49 -0.42 -0.81 16 LS Contribution 337.95 15.07 5.09 5.09 Total: 0.00 -8.58 337.95 -11.57 -20.15 By element: Atomic # 1 Polarization: -7.65 SS G_CDS: -4.00 Total: -11.65 kcal Atomic # 6 Polarization: 2.79 SS G_CDS: -5.05 Total: -2.26 kcal Atomic # 7 Polarization: -3.21 SS G_CDS: 0.33 Total: -2.88 kcal Atomic # 8 Polarization: 0.11 SS G_CDS: -0.45 Total: -0.35 kcal Atomic # 14 Polarization: -0.74 SS G_CDS: -5.28 Total: -6.02 kcal Atomic # 16 Polarization: 0.13 SS G_CDS: -2.21 Total: -2.08 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -8.58 -11.57 -20.15 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_15505406_15704118.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.829 kcal (2) G-P(sol) polarization free energy of solvation -8.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.153 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds