Wall clock time and date at job start Mon Mar 8 2021 07:06:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.33328 * 125.94680 * 2 1 4 4 C 1.50695 * 122.71110 * 359.97438 * 3 2 1 5 5 O 1.42904 * 109.47341 * 330.00279 * 4 3 2 6 6 Si 1.86304 * 109.47233 * 210.00054 * 4 3 2 7 7 N 1.32123 * 114.57887 * 179.75658 * 3 2 1 8 8 C 1.29688 * 116.86213 * 0.46410 * 7 3 2 9 9 N 1.38613 * 124.94823 * 179.81871 * 8 7 3 10 10 C 1.46494 * 120.00182 * 179.72354 * 9 8 7 11 11 H 1.09005 * 112.84883 * 23.80560 * 10 9 8 12 12 C 1.53779 * 113.61497 * 154.99771 * 10 9 8 13 13 C 1.53780 * 87.08259 * 89.11751 * 12 10 9 14 14 H 1.09002 * 113.61601 * 270.80095 * 13 12 10 15 15 C 1.50696 * 113.61722 * 139.97851 * 13 12 10 16 16 C 1.38366 * 119.84524 * 119.99955 * 15 13 12 17 17 C 1.37947 * 120.14940 * 179.97438 * 16 15 13 18 18 C 1.39629 * 119.84839 * 0.02562 * 17 16 15 19 19 C 1.43205 * 120.15217 * 180.02562 * 18 17 16 20 20 N 9.69803 * 143.93310 * 154.55283 * 9 1 2 21 21 C 1.39630 * 119.69955 * 0.27680 * 18 17 16 22 22 C 1.37952 * 119.84591 * 359.40223 * 21 18 17 23 23 C 1.53779 * 87.07964 * 25.43229 * 13 12 10 24 24 S 1.70966 * 110.10453 * 359.55691 * 8 7 3 25 25 H 1.08998 * 109.46659 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46899 * 300.02241 * 1 2 3 27 27 H 1.08996 * 109.47278 * 60.03125 * 1 2 3 28 28 H 1.09003 * 109.47266 * 90.00524 * 4 3 2 29 29 H 0.96698 * 113.99989 * 299.99985 * 5 4 3 30 30 H 1.48497 * 110.00003 * 180.02562 * 6 4 3 31 31 H 1.48497 * 110.00108 * 301.32185 * 6 4 3 32 32 H 0.97006 * 119.99680 * 359.72186 * 9 8 7 33 33 H 1.08998 * 113.61600 * 334.56578 * 12 10 9 34 34 H 1.09006 * 113.61970 * 203.66577 * 12 10 9 35 35 H 1.07993 * 119.92703 * 0.02562 * 16 15 13 36 36 H 1.08003 * 120.07687 * 180.02562 * 17 16 15 37 37 H 1.07999 * 120.08232 * 179.69881 * 21 18 17 38 38 H 1.07999 * 119.92437 * 180.34527 * 22 21 18 39 39 H 1.09000 * 113.61455 * 89.11487 * 23 13 12 40 40 H 1.08999 * 113.61779 * 220.02254 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2897 1.0794 0.0000 4 6 1.7413 2.4830 -0.0006 5 8 0.4813 2.5019 -0.6746 6 14 2.9324 3.6148 -0.8787 7 7 3.5850 0.8190 0.0051 8 6 3.9315 -0.4308 0.0000 9 7 5.2385 -0.8924 0.0005 10 6 5.5067 -2.3326 0.0005 11 1 4.6808 -2.9169 -0.4053 12 6 6.8751 -2.7044 -0.5945 13 6 7.4474 -2.5438 0.8238 14 1 7.7798 -1.5303 1.0484 15 6 8.4720 -3.5888 1.1832 16 6 9.7593 -3.2054 1.5156 17 6 10.7020 -4.1567 1.8461 18 6 10.3548 -5.5091 1.8443 19 6 11.3282 -6.5021 2.1869 20 7 12.1006 -7.2898 2.4575 21 6 9.0557 -5.8894 1.5017 22 6 8.1211 -4.9272 1.1797 23 6 6.0356 -2.8607 1.3445 24 16 2.5414 -1.4260 0.0000 25 1 -0.3632 -1.0277 0.0005 26 1 -0.3633 0.5142 0.8898 27 1 -0.3633 0.5133 -0.8902 28 1 1.6087 2.8217 1.0270 29 1 0.5239 2.2118 -1.5961 30 1 2.4033 5.0023 -0.8855 31 1 4.2559 3.5797 -0.2062 32 1 5.9756 -0.2617 0.0008 33 1 7.2562 -1.9707 -1.3048 34 1 6.9242 -3.7257 -0.9721 35 1 10.0263 -2.1590 1.5170 36 1 11.7063 -3.8561 2.1057 37 1 8.7818 -6.9341 1.4935 38 1 7.1144 -5.2196 0.9199 39 1 5.8551 -3.9248 1.4970 40 1 5.7390 -2.2532 2.1995 There are 56 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 56 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_15505406_15704122.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:06:59 Heat of formation + Delta-G solvation = 102.749791 kcal Electronic energy + Delta-G solvation = -23692.386601 eV Core-core repulsion = 20180.501650 eV Total energy + Delta-G solvation = -3511.884951 eV No. of doubly occupied orbitals = 56 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 328.099 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.69073 -40.95622 -39.79938 -37.80983 -37.34859 -35.42043 -32.89825 -32.32482 -31.91097 -29.25318 -27.04430 -26.95812 -25.57973 -24.43586 -23.95813 -23.58448 -21.00854 -20.53391 -20.02215 -18.88427 -17.91914 -17.81973 -17.02592 -16.83507 -16.52701 -16.38801 -15.85085 -15.59750 -15.48503 -15.11585 -15.03924 -14.78668 -14.48285 -14.39557 -14.15404 -13.96437 -13.76255 -13.75022 -13.70899 -13.46549 -13.31020 -13.13681 -12.73562 -12.47329 -12.33141 -12.08320 -11.98074 -11.84240 -11.54217 -11.03403 -10.58378 -10.33703 -10.20363 -9.98356 -9.85586 -8.65434 -4.85473 -0.39283 0.01085 0.16575 0.16740 0.77245 1.38337 1.67826 1.75879 1.84527 1.88472 1.93725 2.24539 2.72819 2.82456 3.10788 3.31033 3.34763 3.39821 3.53317 3.57979 3.69575 3.71737 3.92123 4.10441 4.13526 4.20626 4.26445 4.33415 4.42275 4.49473 4.55193 4.57883 4.64854 4.74313 4.80228 4.81215 4.84894 4.90322 5.04205 5.09233 5.14974 5.29534 5.36282 5.58150 5.62702 6.20803 6.48479 6.49254 6.94736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C -0.237 4.237 3 C 0.065 3.935 4 C -0.033 4.033 5 O -0.536 6.536 6 Si 0.716 3.284 7 N -0.543 5.543 8 C 0.319 3.681 9 N -0.678 5.678 10 C 0.125 3.875 11 H 0.099 0.901 12 C -0.131 4.131 13 C -0.078 4.078 14 H 0.103 0.897 15 C -0.042 4.042 16 C -0.115 4.115 17 C -0.066 4.066 18 C -0.032 4.032 19 C 0.250 3.750 20 N -0.412 5.412 21 C -0.066 4.066 22 C -0.119 4.119 23 C -0.149 4.149 24 S 0.103 5.897 25 H 0.058 0.942 26 H 0.075 0.925 27 H 0.083 0.917 28 H 0.120 0.880 29 H 0.379 0.621 30 H -0.262 1.262 31 H -0.252 1.252 32 H 0.413 0.587 33 H 0.083 0.917 34 H 0.105 0.895 35 H 0.133 0.867 36 H 0.134 0.866 37 H 0.134 0.866 38 H 0.135 0.865 39 H 0.101 0.899 40 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.752 -0.083 -3.741 4.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.360 4.360 3 C -0.066 4.066 4 C -0.146 4.146 5 O -0.340 6.340 6 Si 0.617 3.383 7 N -0.269 5.269 8 C -0.052 4.052 9 N -0.318 5.318 10 C 0.019 3.981 11 H 0.117 0.883 12 C -0.170 4.170 13 C -0.096 4.096 14 H 0.121 0.879 15 C -0.043 4.043 16 C -0.133 4.133 17 C -0.087 4.087 18 C -0.035 4.035 19 C -0.066 4.066 20 N -0.087 5.087 21 C -0.086 4.086 22 C -0.137 4.137 23 C -0.188 4.188 24 S 0.352 5.648 25 H 0.077 0.923 26 H 0.093 0.907 27 H 0.101 0.899 28 H 0.137 0.863 29 H 0.226 0.774 30 H -0.188 1.188 31 H -0.176 1.176 32 H 0.251 0.749 33 H 0.102 0.898 34 H 0.123 0.877 35 H 0.151 0.849 36 H 0.152 0.848 37 H 0.152 0.848 38 H 0.153 0.847 39 H 0.119 0.881 40 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -0.963 -1.262 -2.674 3.110 hybrid contribution -0.224 0.944 0.614 1.148 sum -1.187 -0.317 -2.061 2.399 Atomic orbital electron populations 1.20157 0.86344 1.01670 1.03759 1.25171 1.01351 0.92762 1.16718 1.20105 0.86723 0.97188 1.02541 1.24520 0.92375 0.95535 1.02200 1.86527 1.28918 1.89556 1.29018 0.94101 0.77581 0.76509 0.90112 1.65961 1.17312 1.16670 1.26982 1.23236 0.91651 0.91531 0.98760 1.43563 1.01884 1.06101 1.80221 1.21967 0.98570 0.79967 0.97637 0.88342 1.23436 0.93679 1.03741 0.96102 1.21672 0.93021 0.98144 0.96782 0.87869 1.19930 0.94207 0.94092 0.96033 1.21026 0.92485 0.99923 0.99902 1.21224 1.00171 0.90750 0.96527 1.16023 0.91107 0.89957 1.06404 1.25746 0.93465 0.93446 0.93948 1.81311 1.09386 1.09411 1.08613 1.21202 0.91044 1.00443 0.95950 1.20957 0.99864 0.91925 1.00909 1.23703 0.94458 1.02727 0.97898 1.83967 0.96430 1.10484 1.73930 0.92347 0.90683 0.89851 0.86323 0.77370 1.18786 1.17642 0.74857 0.89818 0.87698 0.84870 0.84836 0.84789 0.84732 0.88051 0.90128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 0.04 8.91 36.01 0.32 0.36 16 2 C -0.24 -0.19 6.50 -36.02 -0.23 -0.43 16 3 C 0.06 0.10 5.91 -84.18 -0.50 -0.39 16 4 C -0.03 -0.02 2.94 36.00 0.11 0.08 16 5 O -0.54 0.18 10.17 -35.23 -0.36 -0.17 16 6 Si 0.72 0.41 32.09 -169.99 -5.45 -5.04 16 7 N -0.54 -1.27 8.95 -11.36 -0.10 -1.37 16 8 C 0.32 0.19 8.24 -87.68 -0.72 -0.54 16 9 N -0.68 1.34 5.42 -54.99 -0.30 1.04 16 10 C 0.13 -0.50 4.31 -67.12 -0.29 -0.79 16 11 H 0.10 -0.40 7.06 -51.93 -0.37 -0.77 16 12 C -0.13 0.66 7.29 -25.92 -0.19 0.48 16 13 C -0.08 0.36 3.85 -90.96 -0.35 0.01 16 14 H 0.10 -0.49 8.09 -51.93 -0.42 -0.91 16 15 C -0.04 0.15 5.30 -104.53 -0.55 -0.40 16 16 C -0.12 0.36 9.69 -39.64 -0.38 -0.02 16 17 C -0.07 0.15 9.76 -39.17 -0.38 -0.24 16 18 C -0.03 0.03 5.73 -106.93 -0.61 -0.58 16 19 C 0.25 0.43 15.33 -22.47 -0.34 0.09 16 20 N -0.41 -1.95 18.54 41.83 0.78 -1.17 16 21 C -0.07 0.17 9.76 -39.17 -0.38 -0.21 16 22 C -0.12 0.44 8.58 -39.64 -0.34 0.10 16 23 C -0.15 0.64 7.25 -25.92 -0.19 0.45 16 24 S 0.10 -0.03 21.69 -107.50 -2.33 -2.36 16 25 H 0.06 -0.08 8.14 -51.93 -0.42 -0.50 16 26 H 0.07 0.00 8.14 -51.93 -0.42 -0.42 16 27 H 0.08 -0.15 6.39 -51.93 -0.33 -0.48 16 28 H 0.12 0.15 7.96 -51.93 -0.41 -0.27 16 29 H 0.38 -1.46 8.13 45.56 0.37 -1.09 16 30 H -0.26 -0.81 7.11 56.52 0.40 -0.41 16 31 H -0.25 -1.00 7.11 56.52 0.40 -0.60 16 32 H 0.41 -1.04 8.83 -40.82 -0.36 -1.40 16 33 H 0.08 -0.40 8.14 -51.93 -0.42 -0.83 16 34 H 0.10 -0.59 7.72 -51.93 -0.40 -1.00 16 35 H 0.13 -0.62 8.05 -52.49 -0.42 -1.04 16 36 H 0.13 -0.43 8.06 -52.48 -0.42 -0.85 16 37 H 0.13 -0.50 8.06 -52.49 -0.42 -0.92 16 38 H 0.13 -0.76 6.64 -52.49 -0.35 -1.11 16 39 H 0.10 -0.53 6.29 -51.93 -0.33 -0.86 16 40 H 0.08 -0.23 8.14 -51.93 -0.42 -0.66 16 LS Contribution 354.26 15.07 5.34 5.34 Total: 0.00 -7.64 354.26 -12.23 -19.87 By element: Atomic # 1 Polarization: -9.34 SS G_CDS: -4.75 Total: -14.10 kcal Atomic # 6 Polarization: 3.02 SS G_CDS: -5.04 Total: -2.03 kcal Atomic # 7 Polarization: -1.89 SS G_CDS: 0.38 Total: -1.51 kcal Atomic # 8 Polarization: 0.18 SS G_CDS: -0.36 Total: -0.17 kcal Atomic # 14 Polarization: 0.41 SS G_CDS: -5.45 Total: -5.04 kcal Atomic # 16 Polarization: -0.03 SS G_CDS: -2.33 Total: -2.36 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -7.64 -12.23 -19.87 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_15505406_15704122.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.619 kcal (2) G-P(sol) polarization free energy of solvation -7.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.869 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds