Wall clock time and date at job start Mon Mar 8 2021 07:06:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.33328 * 125.94680 * 2 1 4 4 C 1.50695 * 122.71110 * 359.97438 * 3 2 1 5 5 O 1.42904 * 109.47341 * 330.00279 * 4 3 2 6 6 Si 1.86304 * 109.47233 * 210.00054 * 4 3 2 7 7 N 1.32123 * 114.57887 * 179.75658 * 3 2 1 8 8 C 1.29688 * 116.86213 * 0.46410 * 7 3 2 9 9 N 1.38613 * 124.94823 * 179.81871 * 8 7 3 10 10 C 1.46494 * 120.00182 * 179.72354 * 9 8 7 11 11 H 1.09005 * 112.84883 * 23.80560 * 10 9 8 12 12 C 1.53779 * 113.61497 * 154.99771 * 10 9 8 13 13 C 1.53780 * 87.08259 * 89.11751 * 12 10 9 14 14 H 1.09002 * 113.61601 * 270.80095 * 13 12 10 15 15 C 1.50696 * 113.61722 * 139.97851 * 13 12 10 16 16 C 1.38366 * 119.84524 * 119.99955 * 15 13 12 17 17 C 1.37947 * 120.14940 * 179.97438 * 16 15 13 18 18 C 1.39629 * 119.84839 * 0.02562 * 17 16 15 19 19 C 1.43205 * 120.15217 * 180.02562 * 18 17 16 20 20 N 9.69803 * 143.93310 * 154.55283 * 9 1 2 21 21 C 1.39630 * 119.69955 * 0.27680 * 18 17 16 22 22 C 1.37952 * 119.84591 * 359.40223 * 21 18 17 23 23 C 1.53779 * 87.07964 * 25.43229 * 13 12 10 24 24 S 1.70966 * 110.10453 * 359.55691 * 8 7 3 25 25 H 1.08998 * 109.46659 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46899 * 300.02241 * 1 2 3 27 27 H 1.08996 * 109.47278 * 60.03125 * 1 2 3 28 28 H 1.09003 * 109.47266 * 90.00524 * 4 3 2 29 29 H 0.96698 * 113.99989 * 299.99985 * 5 4 3 30 30 H 1.48497 * 110.00003 * 180.02562 * 6 4 3 31 31 H 1.48497 * 110.00108 * 301.32185 * 6 4 3 32 32 H 0.97006 * 119.99680 * 359.72186 * 9 8 7 33 33 H 1.08998 * 113.61600 * 334.56578 * 12 10 9 34 34 H 1.09006 * 113.61970 * 203.66577 * 12 10 9 35 35 H 1.07993 * 119.92703 * 0.02562 * 16 15 13 36 36 H 1.08003 * 120.07687 * 180.02562 * 17 16 15 37 37 H 1.07999 * 120.08232 * 179.69881 * 21 18 17 38 38 H 1.07999 * 119.92437 * 180.34527 * 22 21 18 39 39 H 1.09000 * 113.61455 * 89.11487 * 23 13 12 40 40 H 1.08999 * 113.61779 * 220.02254 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2897 1.0794 0.0000 4 6 1.7413 2.4830 -0.0006 5 8 0.4813 2.5019 -0.6746 6 14 2.9324 3.6148 -0.8787 7 7 3.5850 0.8190 0.0051 8 6 3.9315 -0.4308 0.0000 9 7 5.2385 -0.8924 0.0005 10 6 5.5067 -2.3326 0.0005 11 1 4.6808 -2.9169 -0.4053 12 6 6.8751 -2.7044 -0.5945 13 6 7.4474 -2.5438 0.8238 14 1 7.7798 -1.5303 1.0484 15 6 8.4720 -3.5888 1.1832 16 6 9.7593 -3.2054 1.5156 17 6 10.7020 -4.1567 1.8461 18 6 10.3548 -5.5091 1.8443 19 6 11.3282 -6.5021 2.1869 20 7 12.1006 -7.2898 2.4575 21 6 9.0557 -5.8894 1.5017 22 6 8.1211 -4.9272 1.1797 23 6 6.0356 -2.8607 1.3445 24 16 2.5414 -1.4260 0.0000 25 1 -0.3632 -1.0277 0.0005 26 1 -0.3633 0.5142 0.8898 27 1 -0.3633 0.5133 -0.8902 28 1 1.6087 2.8217 1.0270 29 1 0.5239 2.2118 -1.5961 30 1 2.4033 5.0023 -0.8855 31 1 4.2559 3.5797 -0.2062 32 1 5.9756 -0.2617 0.0008 33 1 7.2562 -1.9707 -1.3048 34 1 6.9242 -3.7257 -0.9721 35 1 10.0263 -2.1590 1.5170 36 1 11.7063 -3.8561 2.1057 37 1 8.7818 -6.9341 1.4935 38 1 7.1144 -5.2196 0.9199 39 1 5.8551 -3.9248 1.4970 40 1 5.7390 -2.2532 2.1995 There are 56 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 56 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_15505406_15704122.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:06:58 Heat of formation + Delta-G solvation = 108.111684 kcal Electronic energy + Delta-G solvation = -23692.154092 eV Core-core repulsion = 20180.501650 eV Total energy + Delta-G solvation = -3511.652442 eV No. of doubly occupied orbitals = 56 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 328.099 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.43640 -40.91853 -39.60112 -37.80230 -37.44618 -35.29465 -32.79561 -32.09219 -31.75286 -29.23296 -26.75995 -26.66627 -25.54966 -24.37149 -23.72467 -23.37446 -20.88226 -20.37931 -19.87081 -18.79091 -17.80592 -17.72348 -16.84440 -16.63240 -16.48742 -16.19996 -15.65093 -15.60063 -15.39486 -15.14733 -14.87893 -14.60503 -14.32090 -14.31587 -14.20275 -13.86178 -13.79700 -13.74075 -13.42418 -13.36854 -13.19381 -12.96741 -12.69288 -12.38105 -12.20080 -12.00263 -11.77837 -11.72604 -11.23280 -10.89904 -10.58603 -10.34494 -9.97402 -9.94633 -9.65968 -8.58713 -4.94576 -0.23248 0.01967 0.20470 0.42680 0.78168 1.32497 1.56773 1.74976 1.86361 1.88328 1.94355 2.14039 2.85048 2.85809 3.41097 3.44806 3.57330 3.65647 3.70189 3.90376 3.98781 4.01215 4.20288 4.24709 4.35998 4.41067 4.46903 4.52580 4.54345 4.80678 4.82945 4.85587 4.89593 4.94254 4.96428 5.09036 5.11272 5.12808 5.23758 5.30284 5.37336 5.38187 5.63385 5.78805 5.89163 6.34377 6.40011 6.69843 6.98638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C -0.249 4.249 3 C 0.052 3.948 4 C -0.030 4.030 5 O -0.540 6.540 6 Si 0.792 3.208 7 N -0.574 5.574 8 C 0.311 3.689 9 N -0.672 5.672 10 C 0.120 3.880 11 H 0.103 0.897 12 C -0.122 4.122 13 C -0.075 4.075 14 H 0.105 0.895 15 C -0.037 4.037 16 C -0.121 4.121 17 C -0.070 4.070 18 C -0.054 4.054 19 C 0.276 3.724 20 N -0.476 5.476 21 C -0.066 4.066 22 C -0.117 4.117 23 C -0.145 4.145 24 S 0.128 5.872 25 H 0.065 0.935 26 H 0.066 0.934 27 H 0.095 0.905 28 H 0.111 0.889 29 H 0.395 0.605 30 H -0.296 1.296 31 H -0.300 1.300 32 H 0.414 0.586 33 H 0.084 0.916 34 H 0.118 0.882 35 H 0.148 0.852 36 H 0.138 0.862 37 H 0.144 0.856 38 H 0.158 0.842 39 H 0.116 0.884 40 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.935 -0.444 -4.603 6.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.372 4.372 3 C -0.078 4.078 4 C -0.144 4.144 5 O -0.347 6.347 6 Si 0.699 3.301 7 N -0.302 5.302 8 C -0.060 4.060 9 N -0.312 5.312 10 C 0.014 3.986 11 H 0.121 0.879 12 C -0.160 4.160 13 C -0.093 4.093 14 H 0.123 0.877 15 C -0.037 4.037 16 C -0.139 4.139 17 C -0.090 4.090 18 C -0.058 4.058 19 C -0.038 4.038 20 N -0.152 5.152 21 C -0.087 4.087 22 C -0.135 4.135 23 C -0.184 4.184 24 S 0.377 5.623 25 H 0.084 0.916 26 H 0.085 0.915 27 H 0.113 0.887 28 H 0.128 0.872 29 H 0.245 0.755 30 H -0.224 1.224 31 H -0.228 1.228 32 H 0.253 0.747 33 H 0.102 0.898 34 H 0.136 0.864 35 H 0.165 0.835 36 H 0.156 0.844 37 H 0.161 0.839 38 H 0.176 0.824 39 H 0.134 0.866 40 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -2.148 -1.654 -3.558 4.473 hybrid contribution 0.127 1.111 0.887 1.428 sum -2.021 -0.542 -2.671 3.393 Atomic orbital electron populations 1.20181 0.85490 1.02178 1.03887 1.25410 1.02129 0.93156 1.16465 1.20186 0.86808 0.97606 1.03228 1.24432 0.92689 0.95435 1.01824 1.86494 1.28212 1.89639 1.30380 0.93225 0.73992 0.74055 0.88846 1.65959 1.17868 1.17820 1.28520 1.23501 0.92777 0.91473 0.98292 1.43752 1.01104 1.07073 1.79254 1.22124 0.99383 0.78813 0.98238 0.87901 1.23418 0.92419 1.04451 0.95673 1.21673 0.92553 0.97954 0.97148 0.87687 1.20113 0.94182 0.94488 0.94964 1.21233 0.92535 1.00459 0.99647 1.21342 1.00796 0.90453 0.96428 1.16165 0.91301 0.89759 1.08560 1.26208 0.92681 0.92701 0.92217 1.81316 1.11327 1.11367 1.11225 1.21378 0.90498 1.01380 0.95399 1.21206 1.00611 0.91521 1.00137 1.23709 0.94364 1.03302 0.97031 1.83785 0.95451 1.09447 1.73615 0.91628 0.91546 0.88694 0.87202 0.75505 1.22443 1.22766 0.74687 0.89750 0.86426 0.83465 0.84401 0.83867 0.82407 0.86632 0.91505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 0.12 8.91 71.24 0.63 0.75 16 2 C -0.25 -0.32 6.50 24.58 0.16 -0.16 16 3 C 0.05 0.18 5.91 41.40 0.24 0.42 16 4 C -0.03 -0.06 2.94 71.23 0.21 0.15 16 5 O -0.54 0.55 10.17 -148.98 -1.52 -0.96 16 6 Si 0.79 1.72 32.09 68.60 2.20 3.92 16 7 N -0.57 -2.93 8.95 -189.86 -1.70 -4.63 16 8 C 0.31 0.28 8.24 179.32 1.48 1.76 16 9 N -0.67 3.04 5.42 -327.91 -1.78 1.27 16 10 C 0.12 -1.14 4.31 45.52 0.20 -0.94 16 11 H 0.10 -1.03 7.06 -2.38 -0.02 -1.04 16 12 C -0.12 1.47 7.29 31.12 0.23 1.69 16 13 C -0.08 0.82 3.85 -11.02 -0.04 0.77 16 14 H 0.10 -1.14 8.09 -2.39 -0.02 -1.16 16 15 C -0.04 0.32 5.30 -19.80 -0.10 0.22 16 16 C -0.12 0.88 9.69 22.23 0.22 1.10 16 17 C -0.07 0.32 9.76 22.54 0.22 0.54 16 18 C -0.05 0.11 5.73 -21.36 -0.12 -0.01 16 19 C 0.28 1.29 15.33 88.33 1.35 2.64 16 20 N -0.48 -5.38 18.54 19.00 0.35 -5.03 16 21 C -0.07 0.39 9.76 22.54 0.22 0.61 16 22 C -0.12 1.09 8.58 22.23 0.19 1.28 16 23 C -0.15 1.48 7.25 31.12 0.23 1.71 16 24 S 0.13 -0.16 21.69 -56.49 -1.23 -1.39 16 25 H 0.06 -0.23 8.14 -2.39 -0.02 -0.25 16 26 H 0.07 0.00 8.14 -2.39 -0.02 -0.02 16 27 H 0.09 -0.44 6.39 -2.39 -0.02 -0.45 16 28 H 0.11 0.38 7.96 -2.39 -0.02 0.36 16 29 H 0.39 -3.38 8.13 -74.06 -0.60 -3.98 16 30 H -0.30 -2.24 7.11 99.48 0.71 -1.54 16 31 H -0.30 -3.04 7.11 99.48 0.71 -2.33 16 32 H 0.41 -2.20 8.83 -92.70 -0.82 -3.02 16 33 H 0.08 -0.96 8.14 -2.39 -0.02 -0.98 16 34 H 0.12 -1.66 7.72 -2.38 -0.02 -1.68 16 35 H 0.15 -1.54 8.05 -2.91 -0.02 -1.56 16 36 H 0.14 -0.84 8.06 -2.91 -0.02 -0.87 16 37 H 0.14 -1.18 8.06 -2.91 -0.02 -1.20 16 38 H 0.16 -2.24 6.64 -2.91 -0.02 -2.26 16 39 H 0.12 -1.50 6.29 -2.39 -0.02 -1.52 16 40 H 0.07 -0.44 8.14 -2.39 -0.02 -0.46 16 Total: 0.00 -19.61 354.26 1.36 -18.25 By element: Atomic # 1 Polarization: -23.70 SS G_CDS: -0.28 Total: -23.97 kcal Atomic # 6 Polarization: 7.24 SS G_CDS: 5.31 Total: 12.54 kcal Atomic # 7 Polarization: -5.26 SS G_CDS: -3.12 Total: -8.39 kcal Atomic # 8 Polarization: 0.55 SS G_CDS: -1.52 Total: -0.96 kcal Atomic # 14 Polarization: 1.72 SS G_CDS: 2.20 Total: 3.92 kcal Atomic # 16 Polarization: -0.16 SS G_CDS: -1.23 Total: -1.39 kcal Total: -19.61 1.36 -18.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_15505406_15704122.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.358 kcal (2) G-P(sol) polarization free energy of solvation -19.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.246 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds