Wall clock time and date at job start Mon Mar 8 2021 04:09:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13605 * 1 3 3 C 1.43195 * 179.97438 * 2 1 4 4 C 1.39635 * 120.15036 * 267.29784 * 3 2 1 5 5 C 1.37949 * 119.84694 * 179.97438 * 4 3 2 6 6 C 1.38360 * 120.15172 * 359.97438 * 5 4 3 7 7 C 1.50690 * 119.84980 * 179.97438 * 6 5 4 8 8 H 1.09000 * 112.90879 * 348.75271 * 7 6 5 9 9 C 1.53786 * 113.61518 * 119.99923 * 7 6 5 10 10 C 1.53781 * 87.17350 * 140.02616 * 9 7 6 11 11 H 1.08998 * 113.61196 * 219.97759 * 10 9 7 12 12 N 1.46506 * 113.61613 * 89.15811 * 10 9 7 13 13 C 1.39139 * 120.00128 * 154.99523 * 12 10 9 14 14 N 1.32333 * 119.71808 * 0.02562 * 13 12 10 15 15 C 1.32008 * 121.64805 * 179.97438 * 14 13 12 16 16 C 1.37987 * 120.90030 * 0.02562 * 15 14 13 17 17 C 1.50698 * 120.32712 * 180.02562 * 16 15 14 18 18 O 1.42899 * 109.47348 * 244.99672 * 17 16 15 19 19 Si 1.86303 * 109.46978 * 4.99971 * 17 16 15 20 20 C 1.38907 * 119.34578 * 359.97438 * 16 15 14 21 21 C 1.38448 * 118.48372 * 359.75418 * 20 16 15 22 22 F 1.35097 * 120.46962 * 180.26790 * 21 20 16 23 23 C 1.53781 * 87.08070 * 334.52830 * 10 9 7 24 24 C 1.38362 * 120.30442 * 0.25728 * 6 5 4 25 25 C 1.37955 * 120.15250 * 359.48568 * 24 6 5 26 26 H 1.08001 * 120.07391 * 0.02562 * 4 3 2 27 27 H 1.07995 * 119.92374 * 179.97438 * 5 4 3 28 28 H 1.09002 * 113.61357 * 25.43533 * 9 7 6 29 29 H 1.09002 * 113.61608 * 254.61695 * 9 7 6 30 30 H 0.97003 * 119.99276 * 335.00814 * 12 10 9 31 31 H 1.07997 * 119.55092 * 179.97438 * 15 14 13 32 32 H 1.09005 * 109.47035 * 124.99389 * 17 16 15 33 33 H 0.96703 * 113.99423 * 60.00256 * 18 17 16 34 34 H 1.48496 * 110.00315 * 58.68086 * 19 17 16 35 35 H 1.48499 * 109.99802 * 180.02562 * 19 17 16 36 36 H 1.07991 * 120.75678 * 180.02562 * 20 16 15 37 37 H 1.09005 * 113.61471 * 139.98321 * 23 10 9 38 38 H 1.09003 * 113.61469 * 270.88099 * 23 10 9 39 39 H 1.08003 * 119.92582 * 179.74441 * 24 6 5 40 40 H 1.07997 * 120.08014 * 180.27887 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2693 0.0579 1.2061 5 6 4.6488 0.0576 1.1988 6 6 5.3374 0.0003 0.0002 7 6 6.8443 0.0010 0.0001 8 1 7.2686 0.2441 0.9743 9 6 7.4609 -1.2515 -0.6450 10 6 8.5086 -0.3183 -1.2746 11 1 8.7612 -0.5764 -2.3030 12 7 9.6901 -0.1101 -0.4336 13 6 10.9040 0.2432 -1.0145 14 7 10.9850 0.3902 -2.3272 15 6 12.1170 0.7250 -2.9181 16 6 13.2654 0.9348 -2.1825 17 6 14.5505 1.3171 -2.8704 18 8 15.5112 0.2732 -2.6994 19 14 14.2295 1.5742 -4.6875 20 6 13.2249 0.7911 -0.8014 21 6 12.0227 0.4448 -0.2086 22 9 11.9365 0.2998 1.1318 23 6 7.4632 0.8036 -1.1600 24 6 4.6489 -0.0518 -1.1988 25 6 3.2693 -0.0575 -1.2060 26 1 2.7330 0.1014 2.1425 27 1 5.1924 0.1023 2.1309 28 1 6.8096 -1.7323 -1.3749 29 1 7.8790 -1.9535 0.0765 30 1 9.6259 -0.2188 0.5281 31 1 12.1448 0.8354 -3.9921 32 1 14.9350 2.2396 -2.4353 33 1 15.2351 -0.5790 -3.0638 34 1 13.2085 2.6355 -4.8777 35 1 15.4893 1.9511 -5.3774 36 1 14.1100 0.9502 -0.2035 37 1 7.8828 1.7618 -0.8532 38 1 6.8125 0.8848 -2.0307 39 1 5.1926 -0.0922 -2.1311 40 1 2.7331 -0.1028 -2.1423 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_15505406_17656566.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 04:09:16 Heat of formation + Delta-G solvation = 58.637708 kcal Electronic energy + Delta-G solvation = -25537.628451 eV Core-core repulsion = 21620.762053 eV Total energy + Delta-G solvation = -3916.866398 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 326.117 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -49.93291 -41.59746 -41.00911 -39.49823 -37.91127 -37.44992 -35.41130 -33.21089 -32.44349 -32.00780 -30.87956 -27.08943 -26.61923 -26.17410 -24.96216 -23.74244 -23.12211 -22.85433 -20.30457 -19.84446 -19.40887 -18.47437 -18.19182 -17.47738 -17.12093 -16.95863 -16.58536 -16.11124 -16.01003 -15.82365 -15.59709 -15.36504 -15.19140 -14.99861 -14.62883 -14.60006 -14.32204 -14.29844 -14.00625 -13.98052 -13.76928 -13.51808 -13.35087 -13.14171 -12.92950 -12.54229 -12.19399 -12.13262 -11.85706 -11.75740 -11.17715 -11.04549 -10.67774 -10.63421 -10.38178 -9.94477 -9.64951 -8.72735 -4.94947 -0.22667 -0.05592 0.12738 0.43086 1.34529 1.56973 1.69554 1.88725 1.99017 2.03473 2.56585 2.85414 2.86465 3.05453 3.29307 3.52077 3.57732 3.70064 3.74090 3.80573 3.88930 3.94805 3.99235 4.02326 4.07018 4.29170 4.42585 4.46345 4.49554 4.54128 4.73762 4.76633 4.82262 4.89089 4.93401 5.01082 5.03150 5.12378 5.15807 5.23323 5.31123 5.37748 5.49709 5.66996 5.89460 6.06448 6.23182 6.40287 6.82031 6.98936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.476 5.476 2 C 0.277 3.723 3 C -0.055 4.055 4 C -0.069 4.069 5 C -0.121 4.121 6 C -0.037 4.037 7 C -0.075 4.075 8 H 0.105 0.895 9 C -0.128 4.128 10 C 0.130 3.870 11 H 0.105 0.895 12 N -0.697 5.697 13 C 0.386 3.614 14 N -0.522 5.522 15 C 0.150 3.850 16 C -0.208 4.208 17 C -0.060 4.060 18 O -0.557 6.557 19 Si 0.775 3.225 20 C -0.043 4.043 21 C -0.039 4.039 22 F -0.141 7.141 23 C -0.142 4.142 24 C -0.118 4.118 25 C -0.066 4.066 26 H 0.140 0.860 27 H 0.149 0.851 28 H 0.111 0.889 29 H 0.079 0.921 30 H 0.416 0.584 31 H 0.186 0.814 32 H 0.109 0.891 33 H 0.396 0.604 34 H -0.280 1.280 35 H -0.299 1.299 36 H 0.151 0.849 37 H 0.061 0.939 38 H 0.108 0.892 39 H 0.155 0.845 40 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.575 -2.375 -2.392 5.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.152 5.152 2 C -0.037 4.037 3 C -0.058 4.058 4 C -0.089 4.089 5 C -0.139 4.139 6 C -0.038 4.038 7 C -0.094 4.094 8 H 0.123 0.877 9 C -0.166 4.166 10 C 0.024 3.976 11 H 0.123 0.877 12 N -0.329 5.329 13 C 0.148 3.852 14 N -0.239 5.239 15 C -0.007 4.007 16 C -0.213 4.213 17 C -0.170 4.170 18 O -0.365 6.365 19 Si 0.681 3.319 20 C -0.069 4.069 21 C -0.065 4.065 22 F -0.120 7.120 23 C -0.181 4.181 24 C -0.136 4.136 25 C -0.087 4.087 26 H 0.157 0.843 27 H 0.166 0.834 28 H 0.129 0.871 29 H 0.097 0.903 30 H 0.254 0.746 31 H 0.202 0.798 32 H 0.127 0.873 33 H 0.246 0.754 34 H -0.207 1.207 35 H -0.227 1.227 36 H 0.169 0.831 37 H 0.080 0.920 38 H 0.126 0.874 39 H 0.173 0.827 40 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 2.229 -1.531 -3.321 4.282 hybrid contribution 0.969 0.548 2.058 2.340 sum 3.197 -0.983 -1.263 3.576 Atomic orbital electron populations 1.81318 1.13827 1.11121 1.08932 1.26188 0.93118 0.92144 0.92297 1.16154 0.82877 1.10450 0.96332 1.21347 0.94829 0.96073 0.96683 1.21236 0.93105 1.00426 0.99119 1.20134 0.95639 0.94870 0.93109 1.21734 0.89795 0.97879 0.99947 0.87720 1.23430 0.96665 0.95782 1.00677 1.21875 0.83415 0.96528 0.95759 0.87679 1.44314 1.05400 1.73589 1.09580 1.18522 0.86088 0.91675 0.88954 1.67340 1.28684 1.20127 1.07734 1.22696 0.86117 0.91354 1.00543 1.20980 0.98021 1.08674 0.93617 1.24995 0.87170 0.93406 1.11437 1.86484 1.43146 1.22723 1.84115 0.93852 0.77762 0.86920 0.73386 1.21434 0.96247 0.93790 0.95416 1.18140 0.95672 1.14722 0.77957 1.91466 1.96796 1.94310 1.29447 1.23661 0.97725 0.97781 0.98888 1.21195 0.92944 1.00259 0.99170 1.21368 0.94806 0.95850 0.96633 0.84261 0.83352 0.87111 0.90270 0.74615 0.79803 0.87323 0.75394 1.20653 1.22735 0.83111 0.92044 0.87421 0.82717 0.83897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -5.60 18.54 19.00 0.35 -5.24 16 2 C 0.28 1.46 15.33 88.33 1.35 2.81 16 3 C -0.05 0.06 5.73 -21.36 -0.12 -0.06 16 4 C -0.07 0.26 9.76 22.54 0.22 0.48 16 5 C -0.12 0.77 9.69 22.23 0.22 0.98 16 6 C -0.04 0.26 5.30 -19.81 -0.10 0.16 16 7 C -0.08 0.67 3.87 -10.92 -0.04 0.63 16 8 H 0.10 -0.99 8.09 -2.39 -0.02 -1.01 16 9 C -0.13 1.20 7.28 31.12 0.23 1.43 16 10 C 0.13 -0.83 4.35 45.52 0.20 -0.64 16 11 H 0.11 -0.50 7.41 -2.39 -0.02 -0.52 16 12 N -0.70 2.45 5.42 -321.78 -1.74 0.70 16 13 C 0.39 0.18 7.49 133.09 1.00 1.18 16 14 N -0.52 -0.04 9.13 -193.04 -1.76 -1.80 16 15 C 0.15 -0.46 9.84 84.61 0.83 0.37 16 16 C -0.21 0.52 5.36 -19.76 -0.11 0.41 16 17 C -0.06 0.22 2.82 71.24 0.20 0.42 16 18 O -0.56 1.43 12.84 -148.98 -1.91 -0.49 16 19 Si 0.78 -4.29 29.83 68.60 2.05 -2.24 16 20 C -0.04 0.00 9.82 22.48 0.22 0.22 16 21 C -0.04 -0.06 7.35 22.59 0.17 0.10 16 22 F -0.14 -0.44 16.65 44.97 0.75 0.30 16 23 C -0.14 1.06 7.26 31.21 0.23 1.28 16 24 C -0.12 0.88 8.60 22.23 0.19 1.07 16 25 C -0.07 0.31 9.76 22.54 0.22 0.53 16 26 H 0.14 -0.79 8.06 -2.91 -0.02 -0.82 16 27 H 0.15 -1.45 8.05 -2.91 -0.02 -1.48 16 28 H 0.11 -1.20 7.73 -2.39 -0.02 -1.22 16 29 H 0.08 -0.71 8.14 -2.39 -0.02 -0.73 16 30 H 0.42 -2.21 8.18 -92.71 -0.76 -2.97 16 31 H 0.19 -1.58 4.91 -2.91 -0.01 -1.59 16 32 H 0.11 -0.28 7.96 -2.38 -0.02 -0.30 16 33 H 0.40 -4.21 8.70 -74.05 -0.64 -4.85 16 34 H -0.28 0.30 7.11 99.48 0.71 1.00 16 35 H -0.30 -0.79 7.11 99.48 0.71 -0.08 16 36 H 0.15 -0.17 8.06 -2.92 -0.02 -0.19 16 37 H 0.06 -0.25 8.14 -2.38 -0.02 -0.27 16 38 H 0.11 -1.02 6.30 -2.39 -0.02 -1.03 16 39 H 0.16 -1.80 6.63 -2.91 -0.02 -1.82 16 40 H 0.14 -1.00 8.06 -2.91 -0.02 -1.02 16 Total: 0.00 -18.67 350.61 2.38 -16.29 By element: Atomic # 1 Polarization: -18.65 SS G_CDS: -0.24 Total: -18.89 kcal Atomic # 6 Polarization: 6.48 SS G_CDS: 4.89 Total: 11.37 kcal Atomic # 7 Polarization: -3.19 SS G_CDS: -3.15 Total: -6.34 kcal Atomic # 8 Polarization: 1.43 SS G_CDS: -1.91 Total: -0.49 kcal Atomic # 9 Polarization: -0.44 SS G_CDS: 0.75 Total: 0.30 kcal Atomic # 14 Polarization: -4.29 SS G_CDS: 2.05 Total: -2.24 kcal Total: -18.67 2.38 -16.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_15505406_17656566.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.927 kcal (2) G-P(sol) polarization free energy of solvation -18.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.289 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds