Wall clock time and date at job start Mon Mar 8 2021 04:33:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34715 * 116.99851 * 2 1 4 4 O 1.21476 * 119.99899 * 359.97438 * 3 2 1 5 5 C 1.47723 * 120.00354 * 179.97438 * 3 2 1 6 6 C 1.39616 * 120.15142 * 180.28768 * 5 3 2 7 7 C 1.37964 * 119.84432 * 180.22955 * 6 5 3 8 8 C 1.50701 * 119.92109 * 179.75596 * 7 6 5 9 9 H 1.09002 * 112.85178 * 9.39226 * 8 7 6 10 10 C 1.53785 * 113.69000 * 140.66384 * 8 7 6 11 11 C 1.53779 * 87.08093 * 139.98979 * 10 8 7 12 12 H 1.08994 * 113.61314 * 220.01752 * 11 10 8 13 13 N 1.46504 * 113.61484 * 89.11287 * 11 10 8 14 14 C 1.38407 * 119.99738 * 107.50024 * 13 11 10 15 15 N 1.32498 * 119.21753 * 359.73619 * 14 13 11 16 16 C 1.32273 * 120.73855 * 179.72061 * 15 14 13 17 17 C 1.38609 * 119.19801 * 0.53598 * 16 15 14 18 18 C 1.50698 * 120.71912 * 179.75571 * 17 16 15 19 19 O 1.42902 * 109.47113 * 244.97583 * 18 17 16 20 20 Si 1.86300 * 109.47452 * 4.98209 * 18 17 16 21 21 C 1.38603 * 118.55665 * 359.73508 * 17 16 15 22 22 N 1.32279 * 119.19886 * 359.97438 * 21 17 16 23 23 C 1.53781 * 113.61206 * 238.19920 * 8 7 6 24 24 C 1.38343 * 120.15060 * 359.47921 * 7 6 5 25 25 C 1.38385 * 120.30699 * 0.27706 * 24 7 6 26 26 C 1.37929 * 120.14869 * 359.97275 * 25 24 7 27 27 H 1.09004 * 109.46869 * 60.00793 * 1 2 3 28 28 H 1.08997 * 109.46568 * 179.97438 * 1 2 3 29 29 H 1.08991 * 109.47189 * 300.00022 * 1 2 3 30 30 H 1.08000 * 120.07418 * 359.97438 * 6 5 3 31 31 H 1.09003 * 113.60734 * 254.54099 * 10 8 7 32 32 H 1.08996 * 113.61146 * 25.43597 * 10 8 7 33 33 H 0.96996 * 119.99953 * 287.50554 * 13 11 10 34 34 H 1.08001 * 120.40176 * 180.25029 * 16 15 14 35 35 H 1.09004 * 109.46965 * 124.97872 * 18 17 16 36 36 H 0.96703 * 113.99490 * 60.00629 * 19 18 17 37 37 H 1.48497 * 110.00034 * 180.02562 * 20 18 17 38 38 H 1.48507 * 109.99743 * 301.31655 * 20 18 17 39 39 H 1.08003 * 120.39802 * 179.97438 * 21 17 16 40 40 H 1.09005 * 113.61302 * 334.48043 * 23 8 7 41 41 H 1.08996 * 113.61527 * 105.30207 * 23 8 7 42 42 H 1.08003 * 119.84597 * 180.29258 * 24 7 6 43 43 H 1.07994 * 119.93099 * 179.97438 * 25 24 7 44 44 H 1.07995 * 120.07257 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2003 0.0000 4 8 1.4019 2.2191 -0.0005 5 6 3.5388 1.2778 0.0006 6 6 4.1758 2.5201 0.0066 7 6 5.5539 2.5851 0.0023 8 6 6.2433 3.9252 0.0033 9 1 5.5562 4.7545 0.1714 10 6 7.4973 3.9743 0.8920 11 6 8.1543 4.8131 -0.2168 12 1 9.1995 4.5601 -0.3945 13 7 7.9330 6.2540 -0.0718 14 6 8.9726 7.0774 0.3245 15 7 10.1601 6.5452 0.5737 16 6 11.1761 7.3046 0.9489 17 6 10.9834 8.6699 1.0909 18 6 12.1155 9.5663 1.5219 19 8 11.8133 10.1355 2.7974 20 14 13.6852 8.5702 1.6424 21 6 9.7271 9.1927 0.8275 22 7 8.7554 8.3783 0.4502 23 6 7.1814 4.1361 -1.1968 24 6 6.3043 1.4229 0.0029 25 6 5.6794 0.1881 0.0020 26 6 4.3024 0.1086 0.0011 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3632 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 3.5911 3.4281 0.0105 31 1 7.3508 4.5204 1.8240 32 1 7.9662 3.0014 1.0395 33 1 7.0579 6.6310 -0.2534 34 1 12.1428 6.8656 1.1468 35 1 12.2464 10.3635 0.7901 36 1 11.6837 9.4824 3.4987 37 1 14.8091 9.4428 2.0673 38 1 13.5092 7.4606 2.6136 39 1 9.5438 10.2522 0.9290 40 1 7.5641 3.2075 -1.6203 41 1 6.7795 4.8117 -1.9518 42 1 7.3829 1.4795 0.0043 43 1 6.2712 -0.7152 0.0021 44 1 3.8161 -0.8556 0.0009 There are 62 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 62 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_15508396_12175864.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 04:33:46 Heat of formation + Delta-G solvation = 9.208216 kcal Electronic energy + Delta-G solvation = -27910.640296 eV Core-core repulsion = 23796.408588 eV Total energy + Delta-G solvation = -4114.231708 eV No. of doubly occupied orbitals = 62 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 342.141 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.17068 -41.76242 -40.96093 -39.19167 -38.08458 -37.59417 -35.56374 -34.72759 -32.78613 -32.30682 -31.49713 -28.74879 -26.97297 -26.69166 -26.11599 -25.60072 -25.01832 -23.28065 -22.87078 -21.96079 -20.30213 -19.61837 -18.88019 -18.43127 -18.22647 -18.07074 -17.49491 -17.07452 -16.63415 -16.55232 -16.21684 -16.08385 -15.93183 -15.70746 -15.48148 -14.91950 -14.70413 -14.65056 -14.56870 -14.37971 -14.10919 -13.99169 -13.51090 -13.24273 -13.18449 -13.13103 -12.84350 -12.67274 -12.26012 -11.98339 -11.92445 -11.90915 -11.81552 -11.77609 -11.71115 -11.27065 -11.09993 -10.68582 -10.08152 -10.04202 -9.75858 -9.10950 -4.89330 -0.39432 0.04781 0.14103 0.30223 1.33213 1.39552 1.59561 1.61577 1.79016 1.99919 2.68006 2.77730 3.15060 3.43805 3.46591 3.58896 3.61403 3.66376 3.70118 3.74383 3.80434 3.88085 3.97943 4.13367 4.14956 4.22117 4.22984 4.25056 4.27911 4.41720 4.62845 4.64367 4.66923 4.73598 4.78229 4.80638 4.86480 4.96878 5.00551 5.04165 5.12122 5.16981 5.25723 5.36525 5.39653 5.54699 5.80895 5.84230 6.04802 6.39210 6.49764 6.54361 7.26554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.357 6.357 3 C 0.505 3.495 4 O -0.542 6.542 5 C -0.148 4.148 6 C -0.067 4.067 7 C -0.082 4.082 8 C -0.073 4.073 9 H 0.093 0.907 10 C -0.138 4.138 11 C 0.136 3.864 12 H 0.110 0.890 13 N -0.676 5.676 14 C 0.555 3.445 15 N -0.572 5.572 16 C 0.193 3.807 17 C -0.284 4.284 18 C -0.059 4.059 19 O -0.548 6.548 20 Si 0.762 3.238 21 C 0.212 3.788 22 N -0.592 5.592 23 C -0.126 4.126 24 C -0.074 4.074 25 C -0.126 4.126 26 C -0.068 4.068 27 H 0.062 0.938 28 H 0.135 0.865 29 H 0.061 0.939 30 H 0.123 0.877 31 H 0.058 0.942 32 H 0.112 0.888 33 H 0.416 0.584 34 H 0.188 0.812 35 H 0.131 0.869 36 H 0.385 0.615 37 H -0.301 1.301 38 H -0.277 1.277 39 H 0.181 0.819 40 H 0.116 0.884 41 H 0.077 0.923 42 H 0.159 0.841 43 H 0.161 0.839 44 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.382 -5.092 -2.158 7.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.273 6.273 3 C 0.352 3.648 4 O -0.434 6.434 5 C -0.149 4.149 6 C -0.085 4.085 7 C -0.082 4.082 8 C -0.091 4.091 9 H 0.112 0.888 10 C -0.177 4.177 11 C 0.030 3.970 12 H 0.128 0.872 13 N -0.312 5.312 14 C 0.198 3.802 15 N -0.295 5.295 16 C 0.026 3.974 17 C -0.292 4.292 18 C -0.169 4.169 19 O -0.356 6.356 20 Si 0.667 3.333 21 C 0.045 3.955 22 N -0.315 5.315 23 C -0.164 4.164 24 C -0.091 4.091 25 C -0.143 4.143 26 C -0.086 4.086 27 H 0.081 0.919 28 H 0.153 0.847 29 H 0.080 0.920 30 H 0.141 0.859 31 H 0.077 0.923 32 H 0.130 0.870 33 H 0.254 0.746 34 H 0.204 0.796 35 H 0.149 0.851 36 H 0.234 0.766 37 H -0.229 1.229 38 H -0.204 1.204 39 H 0.198 0.802 40 H 0.134 0.866 41 H 0.096 0.904 42 H 0.176 0.824 43 H 0.179 0.821 44 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 4.065 -5.368 -2.302 7.116 hybrid contribution -1.165 1.197 1.404 2.182 sum 2.901 -4.170 -0.898 5.158 Atomic orbital electron populations 1.23586 0.74318 1.05975 1.02550 1.86530 1.25186 1.31774 1.83781 1.21673 0.89985 0.81400 0.71727 1.90824 1.67708 1.37147 1.47698 1.19172 0.88183 0.96102 1.11419 1.21205 0.94957 0.96296 0.96037 1.19744 0.91916 0.96103 1.00465 1.21596 0.95624 0.93653 0.98255 0.88850 1.23608 0.95281 1.01505 0.97283 1.21879 1.00941 0.77553 0.96584 0.87232 1.43940 1.10101 1.05864 1.71286 1.19605 0.87014 0.85703 0.87865 1.67965 0.99955 1.40359 1.21187 1.23242 0.97130 0.89625 0.87420 1.21688 0.99030 0.96731 1.11751 1.24893 1.02541 1.02503 0.86937 1.86593 1.92058 1.37813 1.19122 0.94243 0.73300 0.76656 0.89070 1.23144 0.86875 1.00078 0.85415 1.67992 1.36759 1.03851 1.22873 1.23454 0.95085 1.02014 0.95837 1.21669 1.01798 0.91181 0.94478 1.21533 0.93810 0.99349 0.99654 1.21684 0.94805 0.97615 0.94481 0.91948 0.84674 0.92010 0.85872 0.92316 0.86971 0.74558 0.79560 0.85144 0.76585 1.22857 1.20393 0.80178 0.86600 0.90429 0.82377 0.82135 0.83459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.01 10.56 113.37 1.20 1.20 16 2 O -0.36 -1.86 9.82 -56.25 -0.55 -2.41 16 3 C 0.51 4.49 7.90 70.33 0.56 5.05 16 4 O -0.54 -8.01 16.14 19.91 0.32 -7.69 16 5 C -0.15 -0.71 5.87 -20.10 -0.12 -0.83 16 6 C -0.07 -0.25 9.25 22.54 0.21 -0.04 16 7 C -0.08 0.11 5.29 -19.90 -0.11 0.01 16 8 C -0.07 0.27 3.85 -11.01 -0.04 0.23 16 9 H 0.09 -0.23 8.08 -2.39 -0.02 -0.24 16 10 C -0.14 0.56 7.26 31.12 0.23 0.79 16 11 C 0.14 -0.46 4.33 45.52 0.20 -0.26 16 12 H 0.11 -0.27 7.37 -2.39 -0.02 -0.29 16 13 N -0.68 -0.32 5.41 -327.92 -1.77 -2.09 16 14 C 0.55 2.55 8.43 261.48 2.20 4.75 16 15 N -0.57 -1.87 9.13 -197.98 -1.81 -3.68 16 16 C 0.19 -0.13 9.92 84.72 0.84 0.71 16 17 C -0.28 0.32 5.36 -19.69 -0.11 0.22 16 18 C -0.06 0.20 2.83 71.24 0.20 0.41 16 19 O -0.55 -0.02 12.85 -148.98 -1.91 -1.94 16 20 Si 0.76 -3.67 29.95 68.60 2.05 -1.61 16 21 C 0.21 0.39 10.99 84.71 0.93 1.32 16 22 N -0.59 -3.36 10.46 -197.98 -2.07 -5.43 16 23 C -0.13 0.74 7.29 31.12 0.23 0.96 16 24 C -0.07 0.36 8.54 22.33 0.19 0.55 16 25 C -0.13 0.57 10.03 22.23 0.22 0.79 16 26 C -0.07 0.02 9.62 22.54 0.22 0.24 16 27 H 0.06 0.05 8.14 -2.39 -0.02 0.03 16 28 H 0.14 -0.86 8.14 -2.39 -0.02 -0.88 16 29 H 0.06 0.06 8.14 -2.39 -0.02 0.04 16 30 H 0.12 0.67 7.64 -2.91 -0.02 0.65 16 31 H 0.06 -0.02 8.14 -2.39 -0.02 -0.04 16 32 H 0.11 -0.81 6.39 -2.39 -0.02 -0.83 16 33 H 0.42 -0.29 8.82 -92.71 -0.82 -1.11 16 34 H 0.19 -1.12 5.01 -2.91 -0.01 -1.14 16 35 H 0.13 -0.73 7.96 -2.38 -0.02 -0.75 16 36 H 0.38 -1.91 8.70 -74.06 -0.64 -2.56 16 37 H -0.30 -1.01 7.11 99.48 0.71 -0.30 16 38 H -0.28 0.41 7.02 99.48 0.70 1.11 16 39 H 0.18 -0.29 8.06 -2.91 -0.02 -0.31 16 40 H 0.12 -0.98 7.63 -2.38 -0.02 -1.00 16 41 H 0.08 -0.39 8.14 -2.39 -0.02 -0.41 16 42 H 0.16 -1.64 6.70 -2.91 -0.02 -1.66 16 43 H 0.16 -1.59 8.06 -2.91 -0.02 -1.61 16 44 H 0.15 -0.42 7.61 -2.91 -0.02 -0.44 16 Total: 0.00 -21.41 373.93 0.94 -20.48 By element: Atomic # 1 Polarization: -11.36 SS G_CDS: -0.37 Total: -11.72 kcal Atomic # 6 Polarization: 9.04 SS G_CDS: 7.05 Total: 16.09 kcal Atomic # 7 Polarization: -5.55 SS G_CDS: -5.65 Total: -11.20 kcal Atomic # 8 Polarization: -9.89 SS G_CDS: -2.15 Total: -12.03 kcal Atomic # 14 Polarization: -3.67 SS G_CDS: 2.05 Total: -1.61 kcal Total: -21.41 0.94 -20.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_15508396_12175864.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.685 kcal (2) G-P(sol) polarization free energy of solvation -21.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.477 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds