Wall clock time and date at job start Mon Mar 8 2021 04:33:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34705 * 116.99774 * 2 1 4 4 O 1.21466 * 120.00563 * 0.02562 * 3 2 1 5 5 C 1.47736 * 119.99790 * 180.02562 * 3 2 1 6 6 C 1.39606 * 120.14676 * 180.29570 * 5 3 2 7 7 C 1.37965 * 119.84572 * 180.22824 * 6 5 3 8 8 C 1.50703 * 119.92843 * 179.75093 * 7 6 5 9 9 H 1.08994 * 112.84721 * 10.91991 * 8 7 6 10 10 C 1.53777 * 113.69315 * 142.19051 * 8 7 6 11 11 C 1.53781 * 87.08270 * 139.99116 * 10 8 7 12 12 H 1.09001 * 113.69469 * 220.00684 * 11 10 8 13 13 N 1.46503 * 113.61245 * 89.11434 * 11 10 8 14 14 C 1.39005 * 119.99777 * 107.50540 * 13 11 10 15 15 N 1.32397 * 119.70622 * 180.02562 * 14 13 11 16 16 C 1.31964 * 121.62247 * 179.97438 * 15 14 13 17 17 C 1.38025 * 120.85841 * 359.97438 * 16 15 14 18 18 C 1.50700 * 120.33364 * 179.97438 * 17 16 15 19 19 O 1.42898 * 109.47076 * 120.00145 * 18 17 16 20 20 Si 1.86299 * 109.47427 * 0.02562 * 18 17 16 21 21 C 1.38875 * 119.32870 * 0.02562 * 17 16 15 22 22 C 1.38300 * 118.50617 * 0.02562 * 21 17 16 23 23 C 1.53782 * 113.61308 * 239.72980 * 8 7 6 24 24 C 1.38350 * 120.14766 * 359.47761 * 7 6 5 25 25 C 1.38389 * 120.30396 * 0.27306 * 24 7 6 26 26 C 1.37922 * 120.14751 * 359.97438 * 25 24 7 27 27 H 1.09000 * 109.47381 * 299.99957 * 1 2 3 28 28 H 1.09002 * 109.47206 * 59.99872 * 1 2 3 29 29 H 1.09006 * 109.47201 * 179.97438 * 1 2 3 30 30 H 1.08004 * 120.08184 * 359.97438 * 6 5 3 31 31 H 1.09002 * 113.61349 * 25.44301 * 10 8 7 32 32 H 1.08997 * 113.61469 * 254.54486 * 10 8 7 33 33 H 0.96998 * 120.00370 * 287.50955 * 13 11 10 34 34 H 1.08006 * 119.57015 * 180.27190 * 16 15 14 35 35 H 1.08997 * 109.46737 * 239.99949 * 18 17 16 36 36 H 0.96701 * 114.00198 * 179.97438 * 19 18 17 37 37 H 1.48505 * 109.99828 * 298.68012 * 20 18 17 38 38 H 1.48501 * 109.99877 * 59.99906 * 20 18 17 39 39 H 1.08001 * 120.74948 * 180.02562 * 21 17 16 40 40 H 1.08004 * 120.44914 * 180.02562 * 22 21 17 41 41 H 1.08993 * 113.61696 * 105.38937 * 23 8 7 42 42 H 1.09000 * 113.68841 * 334.48625 * 23 8 7 43 43 H 1.08001 * 119.84704 * 180.25348 * 24 7 6 44 44 H 1.07995 * 119.92448 * 179.97438 * 25 24 7 45 45 H 1.08001 * 120.07369 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0635 1.2003 0.0000 4 8 1.4020 2.2190 0.0005 5 6 3.5388 1.2776 -0.0006 6 6 4.1758 2.5198 0.0057 7 6 5.5539 2.5848 0.0003 8 6 6.2434 3.9249 0.0013 9 1 5.5609 4.7519 0.1967 10 6 7.5189 3.9629 0.8596 11 6 8.1487 4.8157 -0.2543 12 1 9.1893 4.5663 -0.4616 13 7 7.9313 6.2547 -0.0856 14 6 8.9850 7.0766 0.2970 15 7 8.7819 8.3761 0.4483 16 6 9.7547 9.1908 0.8107 17 6 11.0277 8.7125 1.0471 18 6 12.1299 9.6536 1.4599 19 8 12.6369 9.2622 2.7373 20 14 11.4589 11.3885 1.5638 21 6 11.2826 7.3553 0.8996 22 6 10.2437 6.5262 0.5177 23 6 7.1520 4.1511 -1.2186 24 6 6.3043 1.4225 -0.0003 25 6 5.6793 0.1878 -0.0012 26 6 4.3024 0.1084 -0.0010 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 3.5912 3.4280 0.0105 31 1 7.9911 2.9883 0.9832 32 1 7.3954 4.4970 1.8017 33 1 7.0521 6.6339 -0.2409 34 1 9.5510 10.2450 0.9285 35 1 12.9329 9.6177 0.7238 36 1 13.3512 9.8249 3.0662 37 1 10.9571 11.8194 0.2342 38 1 10.3635 11.4502 2.5646 39 1 12.2701 6.9563 1.0790 40 1 10.4068 5.4658 0.3941 41 1 6.7325 4.8373 -1.9542 42 1 7.5245 3.2287 -1.6642 43 1 7.3829 1.4791 -0.0003 44 1 6.2711 -0.7156 -0.0021 45 1 3.8159 -0.8558 -0.0022 There are 62 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 62 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_15508396_13915762.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 04:33:50 Heat of formation + Delta-G solvation = -9.933221 kcal Electronic energy + Delta-G solvation = -27756.158020 eV Core-core repulsion = 23706.522188 eV Total energy + Delta-G solvation = -4049.635832 eV No. of doubly occupied orbitals = 62 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 341.146 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.86759 -41.44839 -40.81804 -39.22675 -37.79522 -37.38368 -35.50117 -33.47245 -32.53916 -32.30680 -31.01896 -28.73701 -26.91642 -26.87302 -25.82152 -25.11858 -24.70155 -22.99990 -22.62352 -21.78066 -20.23882 -19.22884 -18.53220 -18.36910 -18.13738 -17.89886 -17.32359 -17.13136 -16.72410 -16.56826 -16.23408 -15.92097 -15.59647 -15.44219 -15.09473 -14.86173 -14.71048 -14.61149 -14.50478 -14.20652 -14.04948 -13.78865 -13.72718 -13.68000 -13.30054 -13.16438 -12.96037 -12.72967 -12.35350 -12.02955 -11.97799 -11.91341 -11.78517 -11.63991 -11.36612 -11.08901 -10.72665 -10.56726 -10.19109 -10.12988 -9.83852 -8.71963 -4.97983 -0.37570 0.21067 0.23521 0.43050 1.30205 1.51007 1.65217 1.66750 1.95929 1.99097 2.63850 2.80190 3.25971 3.42853 3.45523 3.51929 3.53673 3.62642 3.72160 3.81018 3.82196 3.93334 3.98059 4.01654 4.10237 4.15143 4.18492 4.24807 4.30824 4.31997 4.35793 4.47176 4.52581 4.55530 4.64923 4.69607 4.72410 4.81706 4.86104 4.88196 4.98880 5.03974 5.19736 5.21642 5.30443 5.35836 5.45549 5.51186 5.73183 5.98909 6.49151 6.63811 6.72838 7.13545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.355 6.355 3 C 0.507 3.493 4 O -0.504 6.504 5 C -0.124 4.124 6 C -0.050 4.050 7 C -0.082 4.082 8 C -0.072 4.072 9 H 0.101 0.899 10 C -0.150 4.150 11 C 0.129 3.871 12 H 0.101 0.899 13 N -0.705 5.705 14 C 0.409 3.591 15 N -0.539 5.539 16 C 0.150 3.850 17 C -0.189 4.189 18 C -0.056 4.056 19 O -0.548 6.548 20 Si 0.677 3.323 21 C -0.002 4.002 22 C -0.236 4.236 23 C -0.136 4.136 24 C -0.080 4.080 25 C -0.128 4.128 26 C -0.065 4.065 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.105 0.895 30 H 0.137 0.863 31 H 0.097 0.903 32 H 0.078 0.922 33 H 0.407 0.593 34 H 0.146 0.854 35 H 0.073 0.927 36 H 0.382 0.618 37 H -0.253 1.253 38 H -0.249 1.249 39 H 0.138 0.862 40 H 0.137 0.863 41 H 0.079 0.921 42 H 0.101 0.899 43 H 0.131 0.869 44 H 0.134 0.866 45 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.276 -2.494 -0.609 5.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.272 6.272 3 C 0.352 3.648 4 O -0.393 6.393 5 C -0.125 4.125 6 C -0.068 4.068 7 C -0.082 4.082 8 C -0.091 4.091 9 H 0.119 0.881 10 C -0.189 4.189 11 C 0.022 3.978 12 H 0.119 0.881 13 N -0.337 5.337 14 C 0.174 3.826 15 N -0.255 5.255 16 C -0.007 4.007 17 C -0.194 4.194 18 C -0.167 4.167 19 O -0.354 6.354 20 Si 0.578 3.422 21 C -0.028 4.028 22 C -0.260 4.260 23 C -0.174 4.174 24 C -0.098 4.098 25 C -0.146 4.146 26 C -0.083 4.083 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.123 0.877 30 H 0.155 0.845 31 H 0.115 0.885 32 H 0.097 0.903 33 H 0.243 0.757 34 H 0.163 0.837 35 H 0.091 0.909 36 H 0.229 0.771 37 H -0.178 1.178 38 H -0.174 1.174 39 H 0.156 0.844 40 H 0.155 0.845 41 H 0.098 0.902 42 H 0.119 0.881 43 H 0.149 0.851 44 H 0.152 0.848 45 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 3.081 -2.011 -0.954 3.801 hybrid contribution 0.047 -0.715 -0.091 0.722 sum 3.128 -2.726 -1.045 4.279 Atomic orbital electron populations 1.23342 0.75430 1.04110 1.02868 1.86530 1.23981 1.32451 1.84199 1.21236 0.89169 0.81592 0.72780 1.90856 1.66805 1.36042 1.45562 1.19091 0.89017 0.95039 1.09395 1.21173 0.94017 0.96831 0.94807 1.19616 0.92682 0.95052 1.00881 1.21576 0.95660 0.94368 0.97457 0.88113 1.23690 0.95678 1.00943 0.98549 1.21867 1.00034 0.79292 0.96576 0.88118 1.44147 1.10527 1.05028 1.73975 1.18344 0.87171 0.87586 0.89536 1.67104 1.35086 1.02978 1.20346 1.21995 0.87657 0.98025 0.93007 1.20037 0.95190 0.95456 1.08748 1.24422 0.97920 1.06789 0.87586 1.86489 1.56852 1.58439 1.33638 0.95341 0.85536 0.79430 0.81862 1.21179 0.99055 0.91861 0.90717 1.21506 0.92589 1.01520 1.10432 1.23455 0.96005 1.01568 0.96370 1.21325 1.00445 0.91802 0.96227 1.21189 0.94336 0.98161 1.00951 1.21507 0.94039 0.97988 0.94769 0.91619 0.91625 0.87655 0.84544 0.88474 0.90335 0.75690 0.83738 0.90940 0.77087 1.17793 1.17368 0.84393 0.84525 0.90182 0.88095 0.85094 0.84797 0.84335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 -0.01 10.56 101.05 1.07 1.06 16 2 O -0.36 -0.78 9.82 -40.50 -0.40 -1.18 16 3 C 0.51 1.84 7.90 34.61 0.27 2.11 16 4 O -0.50 -3.13 16.14 -19.24 -0.31 -3.44 16 5 C -0.12 -0.24 5.87 -104.98 -0.62 -0.86 16 6 C -0.05 -0.07 9.25 -39.17 -0.36 -0.43 16 7 C -0.08 0.04 5.28 -104.68 -0.55 -0.51 16 8 C -0.07 0.13 3.85 -90.96 -0.35 -0.22 16 9 H 0.10 -0.14 8.09 -51.93 -0.42 -0.56 16 10 C -0.15 0.32 7.25 -25.92 -0.19 0.13 16 11 C 0.13 -0.26 4.11 -67.11 -0.28 -0.53 16 12 H 0.10 -0.28 6.10 -51.93 -0.32 -0.60 16 13 N -0.70 -0.27 5.44 -53.14 -0.29 -0.56 16 14 C 0.41 1.17 7.65 -155.02 -1.19 -0.01 16 15 N -0.54 -2.61 10.39 -12.44 -0.13 -2.74 16 16 C 0.15 0.62 9.84 -17.57 -0.17 0.44 16 17 C -0.19 -0.52 5.43 -104.46 -0.57 -1.09 16 18 C -0.06 0.00 2.83 36.01 0.10 0.10 16 19 O -0.55 -0.10 12.75 -35.23 -0.45 -0.55 16 20 Si 0.68 -0.54 29.82 -169.99 -5.07 -5.60 16 21 C 0.00 0.00 9.77 -39.32 -0.38 -0.39 16 22 C -0.24 -0.36 9.29 -39.23 -0.36 -0.73 16 23 C -0.14 0.35 7.29 -25.92 -0.19 0.16 16 24 C -0.08 0.13 8.61 -39.48 -0.34 -0.21 16 25 C -0.13 0.17 10.03 -39.64 -0.40 -0.22 16 26 C -0.06 0.00 9.62 -39.17 -0.38 -0.38 16 27 H 0.07 0.00 8.14 -51.93 -0.42 -0.43 16 28 H 0.06 -0.01 8.14 -51.93 -0.42 -0.43 16 29 H 0.11 -0.30 8.14 -51.93 -0.42 -0.72 16 30 H 0.14 0.21 7.64 -52.48 -0.40 -0.19 16 31 H 0.10 -0.33 6.31 -51.93 -0.33 -0.65 16 32 H 0.08 -0.05 8.14 -51.93 -0.42 -0.47 16 33 H 0.41 0.08 8.82 -40.82 -0.36 -0.28 16 34 H 0.15 0.48 4.88 -52.48 -0.26 0.22 16 35 H 0.07 -0.12 7.96 -51.93 -0.41 -0.54 16 36 H 0.38 -1.85 8.74 45.56 0.40 -1.45 16 37 H -0.25 -0.41 7.11 56.52 0.40 -0.01 16 38 H -0.25 -0.65 7.11 56.52 0.40 -0.24 16 39 H 0.14 0.01 8.06 -52.49 -0.42 -0.42 16 40 H 0.14 -0.12 6.03 -52.48 -0.32 -0.44 16 41 H 0.08 -0.16 8.14 -51.93 -0.42 -0.58 16 42 H 0.10 -0.34 7.72 -51.93 -0.40 -0.75 16 43 H 0.13 -0.50 6.65 -52.49 -0.35 -0.84 16 44 H 0.13 -0.46 8.06 -52.49 -0.42 -0.88 16 45 H 0.14 -0.16 7.61 -52.49 -0.40 -0.55 16 LS Contribution 376.39 15.07 5.67 5.67 Total: 0.00 -9.22 376.39 -11.57 -20.79 By element: Atomic # 1 Polarization: -5.10 SS G_CDS: -5.72 Total: -10.82 kcal Atomic # 6 Polarization: 3.30 SS G_CDS: -4.88 Total: -1.58 kcal Atomic # 7 Polarization: -2.87 SS G_CDS: -0.42 Total: -3.29 kcal Atomic # 8 Polarization: -4.01 SS G_CDS: -1.16 Total: -5.17 kcal Atomic # 14 Polarization: -0.54 SS G_CDS: -5.07 Total: -5.60 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -9.22 -11.57 -20.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_15508396_13915762.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.858 kcal (2) G-P(sol) polarization free energy of solvation -9.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds