Wall clock time and date at job start Mon Mar 8 2021 04:33:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34705 * 116.99774 * 2 1 4 4 O 1.21466 * 120.00563 * 0.02562 * 3 2 1 5 5 C 1.47736 * 119.99790 * 180.02562 * 3 2 1 6 6 C 1.39606 * 120.14676 * 180.29570 * 5 3 2 7 7 C 1.37965 * 119.84572 * 180.22824 * 6 5 3 8 8 C 1.50703 * 119.92843 * 179.75093 * 7 6 5 9 9 H 1.08994 * 112.84721 * 10.91991 * 8 7 6 10 10 C 1.53777 * 113.69315 * 142.19051 * 8 7 6 11 11 C 1.53781 * 87.08270 * 139.99116 * 10 8 7 12 12 H 1.09001 * 113.69469 * 220.00684 * 11 10 8 13 13 N 1.46503 * 113.61245 * 89.11434 * 11 10 8 14 14 C 1.39005 * 119.99777 * 107.50540 * 13 11 10 15 15 N 1.32397 * 119.70622 * 180.02562 * 14 13 11 16 16 C 1.31964 * 121.62247 * 179.97438 * 15 14 13 17 17 C 1.38025 * 120.85841 * 359.97438 * 16 15 14 18 18 C 1.50700 * 120.33364 * 179.97438 * 17 16 15 19 19 O 1.42898 * 109.47076 * 120.00145 * 18 17 16 20 20 Si 1.86299 * 109.47427 * 0.02562 * 18 17 16 21 21 C 1.38875 * 119.32870 * 0.02562 * 17 16 15 22 22 C 1.38300 * 118.50617 * 0.02562 * 21 17 16 23 23 C 1.53782 * 113.61308 * 239.72980 * 8 7 6 24 24 C 1.38350 * 120.14766 * 359.47761 * 7 6 5 25 25 C 1.38389 * 120.30396 * 0.27306 * 24 7 6 26 26 C 1.37922 * 120.14751 * 359.97438 * 25 24 7 27 27 H 1.09000 * 109.47381 * 299.99957 * 1 2 3 28 28 H 1.09002 * 109.47206 * 59.99872 * 1 2 3 29 29 H 1.09006 * 109.47201 * 179.97438 * 1 2 3 30 30 H 1.08004 * 120.08184 * 359.97438 * 6 5 3 31 31 H 1.09002 * 113.61349 * 25.44301 * 10 8 7 32 32 H 1.08997 * 113.61469 * 254.54486 * 10 8 7 33 33 H 0.96998 * 120.00370 * 287.50955 * 13 11 10 34 34 H 1.08006 * 119.57015 * 180.27190 * 16 15 14 35 35 H 1.08997 * 109.46737 * 239.99949 * 18 17 16 36 36 H 0.96701 * 114.00198 * 179.97438 * 19 18 17 37 37 H 1.48505 * 109.99828 * 298.68012 * 20 18 17 38 38 H 1.48501 * 109.99877 * 59.99906 * 20 18 17 39 39 H 1.08001 * 120.74948 * 180.02562 * 21 17 16 40 40 H 1.08004 * 120.44914 * 180.02562 * 22 21 17 41 41 H 1.08993 * 113.61696 * 105.38937 * 23 8 7 42 42 H 1.09000 * 113.68841 * 334.48625 * 23 8 7 43 43 H 1.08001 * 119.84704 * 180.25348 * 24 7 6 44 44 H 1.07995 * 119.92448 * 179.97438 * 25 24 7 45 45 H 1.08001 * 120.07369 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0635 1.2003 0.0000 4 8 1.4020 2.2190 0.0005 5 6 3.5388 1.2776 -0.0006 6 6 4.1758 2.5198 0.0057 7 6 5.5539 2.5848 0.0003 8 6 6.2434 3.9249 0.0013 9 1 5.5609 4.7519 0.1967 10 6 7.5189 3.9629 0.8596 11 6 8.1487 4.8157 -0.2543 12 1 9.1893 4.5663 -0.4616 13 7 7.9313 6.2547 -0.0856 14 6 8.9850 7.0766 0.2970 15 7 8.7819 8.3761 0.4483 16 6 9.7547 9.1908 0.8107 17 6 11.0277 8.7125 1.0471 18 6 12.1299 9.6536 1.4599 19 8 12.6369 9.2622 2.7373 20 14 11.4589 11.3885 1.5638 21 6 11.2826 7.3553 0.8996 22 6 10.2437 6.5262 0.5177 23 6 7.1520 4.1511 -1.2186 24 6 6.3043 1.4225 -0.0003 25 6 5.6793 0.1878 -0.0012 26 6 4.3024 0.1084 -0.0010 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 3.5912 3.4280 0.0105 31 1 7.9911 2.9883 0.9832 32 1 7.3954 4.4970 1.8017 33 1 7.0521 6.6339 -0.2409 34 1 9.5510 10.2450 0.9285 35 1 12.9329 9.6177 0.7238 36 1 13.3512 9.8249 3.0662 37 1 10.9571 11.8194 0.2342 38 1 10.3635 11.4502 2.5646 39 1 12.2701 6.9563 1.0790 40 1 10.4068 5.4658 0.3941 41 1 6.7325 4.8373 -1.9542 42 1 7.5245 3.2287 -1.6642 43 1 7.3829 1.4791 -0.0003 44 1 6.2711 -0.7156 -0.0021 45 1 3.8159 -0.8558 -0.0022 There are 62 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 62 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_15508396_13915762.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 04:33:49 Heat of formation + Delta-G solvation = -7.523733 kcal Electronic energy + Delta-G solvation = -27756.053537 eV Core-core repulsion = 23706.522188 eV Total energy + Delta-G solvation = -4049.531349 eV No. of doubly occupied orbitals = 62 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 341.146 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.90287 -41.59644 -40.85635 -39.19007 -37.77267 -37.61551 -35.51980 -33.59239 -32.55317 -32.26999 -31.05189 -28.76866 -26.86480 -26.73886 -25.78777 -25.16621 -24.81390 -22.97384 -22.67901 -21.85367 -20.20719 -19.24863 -18.60136 -18.38160 -18.25003 -17.95466 -17.52181 -17.09913 -16.66670 -16.59397 -16.20039 -15.89904 -15.67452 -15.47070 -15.11603 -14.85629 -14.72587 -14.67184 -14.51289 -14.25088 -14.08404 -13.88547 -13.76251 -13.51182 -13.25872 -13.18502 -12.85438 -12.71170 -12.45050 -12.07809 -11.95591 -11.94551 -11.81589 -11.79487 -11.29468 -11.08731 -10.85560 -10.69328 -10.18405 -10.10476 -9.78227 -8.78700 -4.96711 -0.41862 0.06281 0.27369 0.31121 1.32740 1.37082 1.57055 1.63489 1.95736 1.99189 2.65176 2.68312 3.34989 3.40970 3.49130 3.55914 3.58124 3.65587 3.77562 3.84416 3.91666 3.92881 4.04713 4.09286 4.10720 4.19650 4.22842 4.24915 4.30342 4.37421 4.41562 4.57414 4.60916 4.66485 4.73326 4.77157 4.80763 4.92998 4.94297 4.96052 5.02706 5.11045 5.15283 5.22926 5.24514 5.37288 5.44763 5.53002 5.82115 5.97982 6.41017 6.51834 6.95309 7.01202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.356 6.356 3 C 0.505 3.495 4 O -0.543 6.543 5 C -0.148 4.148 6 C -0.069 4.069 7 C -0.083 4.083 8 C -0.075 4.075 9 H 0.087 0.913 10 C -0.141 4.141 11 C 0.127 3.873 12 H 0.118 0.882 13 N -0.704 5.704 14 C 0.394 3.606 15 N -0.572 5.572 16 C 0.123 3.877 17 C -0.202 4.202 18 C -0.056 4.056 19 O -0.564 6.564 20 Si 0.766 3.234 21 C -0.008 4.008 22 C -0.232 4.232 23 C -0.126 4.126 24 C -0.073 4.073 25 C -0.125 4.125 26 C -0.068 4.068 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.136 0.864 30 H 0.120 0.880 31 H 0.119 0.881 32 H 0.061 0.939 33 H 0.403 0.597 34 H 0.137 0.863 35 H 0.099 0.901 36 H 0.403 0.597 37 H -0.291 1.291 38 H -0.303 1.303 39 H 0.160 0.840 40 H 0.165 0.835 41 H 0.072 0.928 42 H 0.120 0.880 43 H 0.163 0.837 44 H 0.163 0.837 45 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.095 -4.724 -0.803 9.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.272 6.272 3 C 0.352 3.648 4 O -0.435 6.435 5 C -0.149 4.149 6 C -0.087 4.087 7 C -0.083 4.083 8 C -0.094 4.094 9 H 0.105 0.895 10 C -0.180 4.180 11 C 0.022 3.978 12 H 0.136 0.864 13 N -0.335 5.335 14 C 0.158 3.842 15 N -0.290 5.290 16 C -0.033 4.033 17 C -0.207 4.207 18 C -0.168 4.168 19 O -0.374 6.374 20 Si 0.674 3.326 21 C -0.034 4.034 22 C -0.256 4.256 23 C -0.164 4.164 24 C -0.090 4.090 25 C -0.143 4.143 26 C -0.086 4.086 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.154 0.846 30 H 0.138 0.862 31 H 0.138 0.862 32 H 0.079 0.921 33 H 0.239 0.761 34 H 0.154 0.846 35 H 0.116 0.884 36 H 0.255 0.745 37 H -0.218 1.218 38 H -0.231 1.231 39 H 0.178 0.822 40 H 0.182 0.818 41 H 0.091 0.909 42 H 0.138 0.862 43 H 0.180 0.820 44 H 0.180 0.820 45 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 5.938 -4.260 -1.141 7.397 hybrid contribution -0.912 -0.055 -0.016 0.914 sum 5.026 -4.315 -1.158 6.725 Atomic orbital electron populations 1.23592 0.74307 1.06009 1.02532 1.86527 1.25192 1.31721 1.83766 1.21688 0.90017 0.81406 0.71719 1.90823 1.67741 1.37190 1.47723 1.19169 0.88179 0.96101 1.11429 1.21195 0.95083 0.96237 0.96225 1.19748 0.91866 0.96155 1.00494 1.21564 0.95771 0.93501 0.98518 0.89484 1.23689 0.95182 1.01693 0.97454 1.22034 1.01094 0.77862 0.96826 0.86396 1.44322 1.09929 1.05880 1.73400 1.18659 0.88425 0.87273 0.89866 1.67027 1.36026 1.04317 1.21660 1.22068 0.88664 0.97966 0.94599 1.20373 0.95253 0.96706 1.08398 1.24452 0.98078 1.05824 0.88405 1.86432 1.58011 1.59443 1.33542 0.94562 0.83080 0.77743 0.77257 1.21506 1.00126 0.91472 0.90269 1.21824 0.91759 1.02859 1.09171 1.23444 0.95246 1.02039 0.95690 1.21688 1.01900 0.91017 0.94413 1.21552 0.93754 0.99423 0.99528 1.21691 0.94885 0.97555 0.94453 0.92032 0.91980 0.84595 0.86214 0.86249 0.92060 0.76083 0.84597 0.88369 0.74528 1.21820 1.23126 0.82213 0.81773 0.90949 0.86219 0.82004 0.81963 0.83422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.02 10.56 113.37 1.20 1.21 16 2 O -0.36 -1.98 9.82 -56.14 -0.55 -2.53 16 3 C 0.50 4.75 7.90 70.33 0.56 5.31 16 4 O -0.54 -8.43 16.14 19.95 0.32 -8.11 16 5 C -0.15 -0.77 5.87 -20.10 -0.12 -0.89 16 6 C -0.07 -0.30 9.25 22.54 0.21 -0.09 16 7 C -0.08 0.11 5.28 -19.90 -0.11 0.00 16 8 C -0.08 0.26 3.85 -11.01 -0.04 0.22 16 9 H 0.09 -0.07 8.09 -2.39 -0.02 -0.09 16 10 C -0.14 0.78 7.25 31.12 0.23 1.00 16 11 C 0.13 -0.66 4.11 45.52 0.19 -0.47 16 12 H 0.12 -0.99 6.10 -2.39 -0.01 -1.01 16 13 N -0.70 -0.88 5.44 -322.03 -1.75 -2.63 16 14 C 0.39 2.49 7.65 133.06 1.02 3.51 16 15 N -0.57 -6.70 10.39 -193.26 -2.01 -8.71 16 16 C 0.12 1.26 9.84 84.62 0.83 2.09 16 17 C -0.20 -1.17 5.43 -19.76 -0.11 -1.28 16 18 C -0.06 0.03 2.83 71.24 0.20 0.23 16 19 O -0.56 0.48 12.75 -148.98 -1.90 -1.42 16 20 Si 0.77 -0.46 29.82 68.60 2.05 1.59 16 21 C -0.01 -0.02 9.77 22.44 0.22 0.20 16 22 C -0.23 -0.49 9.29 22.50 0.21 -0.28 16 23 C -0.13 0.78 7.29 31.12 0.23 1.01 16 24 C -0.07 0.40 8.61 22.33 0.19 0.59 16 25 C -0.12 0.61 10.03 22.23 0.22 0.83 16 26 C -0.07 0.02 9.62 22.53 0.22 0.24 16 27 H 0.06 0.09 8.14 -2.39 -0.02 0.07 16 28 H 0.06 0.08 8.14 -2.39 -0.02 0.06 16 29 H 0.14 -0.83 8.14 -2.38 -0.02 -0.85 16 30 H 0.12 0.80 7.64 -2.91 -0.02 0.78 16 31 H 0.12 -1.18 6.31 -2.39 -0.02 -1.20 16 32 H 0.06 -0.08 8.14 -2.39 -0.02 -0.10 16 33 H 0.40 0.81 8.82 -92.71 -0.82 -0.01 16 34 H 0.14 1.34 4.88 -2.91 -0.01 1.33 16 35 H 0.10 -0.53 7.96 -2.39 -0.02 -0.55 16 36 H 0.40 -4.60 8.74 -74.06 -0.65 -5.25 16 37 H -0.29 -1.54 7.11 99.48 0.71 -0.83 16 38 H -0.30 -2.45 7.11 99.48 0.71 -1.74 16 39 H 0.16 -0.35 8.06 -2.91 -0.02 -0.37 16 40 H 0.16 -0.73 6.03 -2.91 -0.02 -0.75 16 41 H 0.07 -0.30 8.14 -2.39 -0.02 -0.31 16 42 H 0.12 -1.15 7.72 -2.39 -0.02 -1.17 16 43 H 0.16 -1.92 6.65 -2.91 -0.02 -1.94 16 44 H 0.16 -1.71 8.06 -2.91 -0.02 -1.73 16 45 H 0.15 -0.42 7.61 -2.91 -0.02 -0.44 16 Total: 0.00 -25.59 376.39 1.12 -24.47 By element: Atomic # 1 Polarization: -15.71 SS G_CDS: -0.38 Total: -16.09 kcal Atomic # 6 Polarization: 8.09 SS G_CDS: 5.34 Total: 13.43 kcal Atomic # 7 Polarization: -7.57 SS G_CDS: -3.76 Total: -11.33 kcal Atomic # 8 Polarization: -9.93 SS G_CDS: -2.13 Total: -12.06 kcal Atomic # 14 Polarization: -0.46 SS G_CDS: 2.05 Total: 1.59 kcal Total: -25.59 1.12 -24.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_15508396_13915762.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.943 kcal (2) G-P(sol) polarization free energy of solvation -25.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds