Wall clock time and date at job start Mon Mar 8 2021 04:33:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34709 * 116.99837 * 2 1 4 4 O 1.21465 * 119.99945 * 359.97438 * 3 2 1 5 5 C 1.47729 * 119.99742 * 180.02562 * 3 2 1 6 6 C 1.39607 * 120.14531 * 179.97438 * 5 3 2 7 7 C 1.37970 * 119.84424 * 180.02562 * 6 5 3 8 8 C 1.50697 * 119.92210 * 179.97438 * 7 6 5 9 9 H 1.09004 * 112.85343 * 11.18843 * 8 7 6 10 10 C 1.54047 * 113.69653 * 142.46377 * 8 7 6 11 11 C 1.53783 * 86.98992 * 139.98507 * 10 8 7 12 12 H 1.08996 * 113.62025 * 219.97899 * 11 10 8 13 13 N 1.46504 * 113.61058 * 89.15728 * 11 10 8 14 14 C 1.38619 * 119.99446 * 105.86828 * 13 11 10 15 15 N 1.29683 * 124.95110 * 359.97400 * 14 13 11 16 16 C 1.32122 * 116.86580 * 180.02562 * 15 14 13 17 17 C 1.33321 * 114.57786 * 0.02562 * 16 15 14 18 18 C 1.50703 * 125.94929 * 179.97438 * 17 16 15 19 19 O 1.42905 * 109.47264 * 65.00151 * 18 17 16 20 20 Si 1.86300 * 109.47052 * 184.99883 * 18 17 16 21 21 S 1.70971 * 124.94550 * 180.32587 * 14 13 11 22 22 C 1.53780 * 87.16981 * 334.57067 * 11 10 8 23 23 C 1.38340 * 120.15038 * 0.24640 * 7 6 5 24 24 C 1.38389 * 120.30326 * 359.49516 * 23 7 6 25 25 C 1.37925 * 120.14923 * 0.50559 * 24 23 7 26 26 H 1.08994 * 109.47202 * 300.00139 * 1 2 3 27 27 H 1.08992 * 109.47180 * 60.00757 * 1 2 3 28 28 H 1.09008 * 109.46834 * 180.02562 * 1 2 3 29 29 H 1.08000 * 120.08152 * 359.97438 * 6 5 3 30 30 H 1.09000 * 113.61330 * 25.48063 * 10 8 7 31 31 H 1.09000 * 113.69853 * 254.50261 * 10 8 7 32 32 H 0.96998 * 120.00648 * 285.86859 * 13 11 10 33 33 H 1.07997 * 122.71003 * 179.97438 * 16 15 14 34 34 H 1.09001 * 109.47438 * 304.99894 * 18 17 16 35 35 H 0.96691 * 114.00079 * 179.97438 * 19 18 17 36 36 H 1.48504 * 110.00174 * 178.67930 * 20 18 17 37 37 H 1.48492 * 110.00227 * 299.99958 * 20 18 17 38 38 H 1.09007 * 113.61441 * 140.01789 * 22 11 10 39 39 H 1.08992 * 113.61774 * 270.92399 * 22 11 10 40 40 H 1.07999 * 119.84653 * 179.74854 * 23 7 6 41 41 H 1.07995 * 119.92581 * 180.25431 * 24 23 7 42 42 H 1.08003 * 120.07389 * 179.72326 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2003 0.0000 4 8 1.4020 2.2189 -0.0005 5 6 3.5388 1.2776 -0.0006 6 6 4.1758 2.5199 -0.0011 7 6 5.5540 2.5848 -0.0022 8 6 6.2434 3.9248 -0.0034 9 1 5.5610 4.7522 0.1917 10 6 7.5219 3.9641 0.8551 11 6 8.1484 4.8154 -0.2619 12 1 9.1888 4.5658 -0.4698 13 7 7.9311 6.2546 -0.0947 14 6 8.9744 7.0699 0.3157 15 7 10.1772 6.6620 0.5777 16 6 11.0490 7.5790 0.9581 17 6 10.5595 8.8175 1.0206 18 6 11.3246 10.0520 1.4227 19 8 12.3503 10.3108 0.4619 20 14 10.1624 11.5061 1.4971 21 16 8.8606 8.7584 0.5584 22 6 7.1509 4.1496 -1.2244 23 6 6.3044 1.4226 -0.0079 24 6 5.6794 0.1879 -0.0020 25 6 4.3024 0.1084 -0.0009 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0278 0.0005 29 1 3.5912 3.4279 -0.0015 30 1 7.9948 2.9898 0.9788 31 1 7.4011 4.4997 1.7967 32 1 7.0573 6.6370 -0.2711 33 1 12.0751 7.3441 1.1998 34 1 11.7756 9.8969 2.4028 35 1 12.8838 11.0932 0.6572 36 1 10.8984 12.7234 1.9234 37 1 9.5409 11.7283 0.1669 38 1 6.7306 4.8349 -1.9605 39 1 7.5224 3.2260 -1.6681 40 1 7.3829 1.4792 -0.0128 41 1 6.2712 -0.7155 -0.0023 42 1 3.8160 -0.8558 -0.0008 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_15508396_15704118.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 04:33:53 Heat of formation + Delta-G solvation = -3.384818 kcal Electronic energy + Delta-G solvation = -26225.241540 eV Core-core repulsion = 22265.041914 eV Total energy + Delta-G solvation = -3960.199626 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 347.102 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.75064 -41.16781 -40.40999 -39.14366 -37.89445 -37.37450 -35.35546 -32.48449 -32.26510 -31.15746 -28.73501 -26.95337 -26.79268 -26.12117 -25.16201 -24.30460 -22.97165 -22.13425 -21.02671 -20.14344 -19.23898 -18.78090 -18.55511 -18.14421 -17.52267 -17.31393 -17.09570 -16.75380 -16.27157 -16.09997 -15.88617 -15.68283 -15.38283 -14.97407 -14.72868 -14.60698 -14.54333 -14.30897 -14.07621 -13.96281 -13.65844 -13.28808 -13.15987 -12.96153 -12.83355 -12.66899 -12.39689 -12.29191 -12.00353 -11.91161 -11.77785 -11.61675 -11.31590 -11.04783 -10.67147 -10.22773 -10.12917 -10.10493 -9.81139 -8.70392 -5.05989 -0.35356 -0.01186 0.08233 0.25027 0.72700 1.24185 1.52639 1.53586 1.67968 1.90529 2.07048 2.11189 2.66308 3.31197 3.35705 3.49606 3.58388 3.64598 3.70069 3.76308 3.85563 3.97055 4.02331 4.07133 4.16086 4.21039 4.25373 4.35511 4.40354 4.54075 4.56780 4.60624 4.69173 4.72352 4.80886 4.84856 4.89499 4.93984 4.99009 5.21087 5.22594 5.26549 5.38140 5.48573 5.75674 5.88850 6.06803 6.40959 6.73781 7.05242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.355 6.355 3 C 0.508 3.492 4 O -0.504 6.504 5 C -0.125 4.125 6 C -0.050 4.050 7 C -0.082 4.082 8 C -0.074 4.074 9 H 0.100 0.900 10 C -0.144 4.144 11 C 0.137 3.863 12 H 0.108 0.892 13 N -0.676 5.676 14 C 0.326 3.674 15 N -0.547 5.547 16 C 0.119 3.881 17 C -0.260 4.260 18 C -0.019 4.019 19 O -0.535 6.535 20 Si 0.649 3.351 21 S 0.097 5.903 22 C -0.137 4.137 23 C -0.079 4.079 24 C -0.128 4.128 25 C -0.065 4.065 26 H 0.065 0.935 27 H 0.065 0.935 28 H 0.105 0.895 29 H 0.137 0.863 30 H 0.096 0.904 31 H 0.077 0.923 32 H 0.415 0.585 33 H 0.175 0.825 34 H 0.085 0.915 35 H 0.381 0.619 36 H -0.241 1.241 37 H -0.239 1.239 38 H 0.078 0.922 39 H 0.101 0.899 40 H 0.132 0.868 41 H 0.134 0.866 42 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.255 -1.570 1.855 2.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.272 6.272 3 C 0.353 3.647 4 O -0.393 6.393 5 C -0.126 4.126 6 C -0.069 4.069 7 C -0.082 4.082 8 C -0.093 4.093 9 H 0.118 0.882 10 C -0.183 4.183 11 C 0.029 3.971 12 H 0.126 0.874 13 N -0.315 5.315 14 C -0.044 4.044 15 N -0.272 5.272 16 C -0.033 4.033 17 C -0.382 4.382 18 C -0.131 4.131 19 O -0.342 6.342 20 Si 0.548 3.452 21 S 0.347 5.653 22 C -0.175 4.175 23 C -0.097 4.097 24 C -0.146 4.146 25 C -0.083 4.083 26 H 0.084 0.916 27 H 0.084 0.916 28 H 0.123 0.877 29 H 0.154 0.846 30 H 0.114 0.886 31 H 0.095 0.905 32 H 0.252 0.748 33 H 0.192 0.808 34 H 0.102 0.898 35 H 0.229 0.771 36 H -0.165 1.165 37 H -0.163 1.163 38 H 0.097 0.903 39 H 0.119 0.881 40 H 0.150 0.850 41 H 0.152 0.848 42 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -1.579 -1.000 1.099 2.168 hybrid contribution 1.302 0.183 -0.186 1.328 sum -0.277 -0.817 0.913 1.256 Atomic orbital electron populations 1.23338 0.75451 1.04102 1.02851 1.86534 1.23962 1.32477 1.84194 1.21240 0.89176 0.81576 0.72743 1.90851 1.66807 1.36048 1.45632 1.19085 0.88982 0.95061 1.09491 1.21161 0.93991 0.96785 0.94923 1.19615 0.92643 0.95094 1.00847 1.21675 0.95689 0.94289 0.97618 0.88194 1.23666 0.95176 1.01054 0.98420 1.21865 1.00674 0.78535 0.95996 0.87439 1.43686 1.09448 1.05708 1.72663 1.23663 0.91160 0.92848 0.96779 1.66469 1.00025 1.36319 1.24423 1.21301 0.99392 0.86459 0.96106 1.24316 0.95616 0.98781 1.19537 1.23705 0.94638 1.01313 0.93481 1.86621 1.46913 1.50161 1.50536 0.95213 0.85188 0.78176 0.86587 1.83999 1.10111 1.03858 1.67360 1.23477 0.96062 1.01682 0.96308 1.21344 1.00537 0.91805 0.96038 1.21195 0.94327 0.98191 1.00920 1.21506 0.94038 0.97983 0.94798 0.91628 0.91629 0.87677 0.84555 0.88552 0.90461 0.74779 0.80780 0.89776 0.77125 1.16459 1.16256 0.90306 0.88081 0.85035 0.84815 0.84370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 -0.01 10.56 101.05 1.07 1.05 16 2 O -0.36 -0.70 9.82 -40.52 -0.40 -1.10 16 3 C 0.51 1.68 7.90 34.61 0.27 1.95 16 4 O -0.50 -2.91 16.14 -19.24 -0.31 -3.22 16 5 C -0.13 -0.21 5.87 -104.98 -0.62 -0.82 16 6 C -0.05 -0.04 9.25 -39.17 -0.36 -0.41 16 7 C -0.08 0.07 5.29 -104.68 -0.55 -0.49 16 8 C -0.07 0.16 3.86 -90.82 -0.35 -0.19 16 9 H 0.10 -0.26 8.09 -51.93 -0.42 -0.68 16 10 C -0.14 0.27 7.27 -25.78 -0.19 0.09 16 11 C 0.14 -0.19 4.42 -67.12 -0.30 -0.49 16 12 H 0.11 0.01 7.70 -51.93 -0.40 -0.39 16 13 N -0.68 0.57 5.42 -54.99 -0.30 0.27 16 14 C 0.33 0.52 8.09 -87.68 -0.71 -0.19 16 15 N -0.55 -1.78 9.85 -15.21 -0.15 -1.93 16 16 C 0.12 0.31 11.24 -19.14 -0.22 0.09 16 17 C -0.26 -0.48 5.76 -36.02 -0.21 -0.68 16 18 C -0.02 0.00 2.98 36.01 0.11 0.10 16 19 O -0.53 -0.66 12.86 -35.23 -0.45 -1.12 16 20 Si 0.65 -0.27 31.06 -169.99 -5.28 -5.55 16 21 S 0.10 0.08 20.59 -107.50 -2.21 -2.13 16 22 C -0.14 0.36 7.29 -25.92 -0.19 0.17 16 23 C -0.08 0.12 8.59 -39.49 -0.34 -0.22 16 24 C -0.13 0.17 10.03 -39.64 -0.40 -0.23 16 25 C -0.07 0.00 9.62 -39.17 -0.38 -0.37 16 26 H 0.06 -0.02 8.14 -51.93 -0.42 -0.44 16 27 H 0.06 -0.02 8.14 -51.93 -0.42 -0.44 16 28 H 0.10 -0.32 8.14 -51.92 -0.42 -0.74 16 29 H 0.14 0.11 7.64 -52.49 -0.40 -0.29 16 30 H 0.10 -0.24 6.33 -51.93 -0.33 -0.57 16 31 H 0.08 -0.06 8.14 -51.93 -0.42 -0.49 16 32 H 0.41 -1.16 8.83 -40.82 -0.36 -1.52 16 33 H 0.18 0.19 8.06 -52.49 -0.42 -0.23 16 34 H 0.08 -0.15 7.96 -51.93 -0.41 -0.57 16 35 H 0.38 -1.12 8.74 45.56 0.40 -0.73 16 36 H -0.24 -0.21 7.11 56.52 0.40 0.19 16 37 H -0.24 -0.64 7.11 56.52 0.40 -0.24 16 38 H 0.08 -0.21 8.14 -51.92 -0.42 -0.63 16 39 H 0.10 -0.30 7.71 -51.93 -0.40 -0.70 16 40 H 0.13 -0.44 6.67 -52.49 -0.35 -0.79 16 41 H 0.13 -0.44 8.06 -52.49 -0.42 -0.86 16 42 H 0.14 -0.16 7.61 -52.48 -0.40 -0.56 16 LS Contribution 372.06 15.07 5.61 5.61 Total: 0.00 -8.42 372.06 -12.08 -20.50 By element: Atomic # 1 Polarization: -5.46 SS G_CDS: -5.23 Total: -10.69 kcal Atomic # 6 Polarization: 2.71 SS G_CDS: -3.35 Total: -0.64 kcal Atomic # 7 Polarization: -1.22 SS G_CDS: -0.45 Total: -1.67 kcal Atomic # 8 Polarization: -4.27 SS G_CDS: -1.16 Total: -5.43 kcal Atomic # 14 Polarization: -0.27 SS G_CDS: -5.28 Total: -5.55 kcal Atomic # 16 Polarization: 0.08 SS G_CDS: -2.21 Total: -2.13 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -8.42 -12.08 -20.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_15508396_15704118.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.118 kcal (2) G-P(sol) polarization free energy of solvation -8.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds