Wall clock time and date at job start Mon Mar 8 2021 04:33:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34709 * 116.99837 * 2 1 4 4 O 1.21465 * 119.99945 * 359.97438 * 3 2 1 5 5 C 1.47729 * 119.99742 * 180.02562 * 3 2 1 6 6 C 1.39607 * 120.14531 * 179.97438 * 5 3 2 7 7 C 1.37970 * 119.84424 * 180.02562 * 6 5 3 8 8 C 1.50697 * 119.92210 * 179.97438 * 7 6 5 9 9 H 1.09004 * 112.85343 * 11.18843 * 8 7 6 10 10 C 1.54047 * 113.69653 * 142.46377 * 8 7 6 11 11 C 1.53783 * 86.98992 * 139.98507 * 10 8 7 12 12 H 1.08996 * 113.62025 * 219.97899 * 11 10 8 13 13 N 1.46504 * 113.61058 * 89.15728 * 11 10 8 14 14 C 1.38619 * 119.99446 * 105.86828 * 13 11 10 15 15 N 1.29683 * 124.95110 * 359.97400 * 14 13 11 16 16 C 1.32122 * 116.86580 * 180.02562 * 15 14 13 17 17 C 1.33321 * 114.57786 * 0.02562 * 16 15 14 18 18 C 1.50703 * 125.94929 * 179.97438 * 17 16 15 19 19 O 1.42905 * 109.47264 * 65.00151 * 18 17 16 20 20 Si 1.86300 * 109.47052 * 184.99883 * 18 17 16 21 21 S 1.70971 * 124.94550 * 180.32587 * 14 13 11 22 22 C 1.53780 * 87.16981 * 334.57067 * 11 10 8 23 23 C 1.38340 * 120.15038 * 0.24640 * 7 6 5 24 24 C 1.38389 * 120.30326 * 359.49516 * 23 7 6 25 25 C 1.37925 * 120.14923 * 0.50559 * 24 23 7 26 26 H 1.08994 * 109.47202 * 300.00139 * 1 2 3 27 27 H 1.08992 * 109.47180 * 60.00757 * 1 2 3 28 28 H 1.09008 * 109.46834 * 180.02562 * 1 2 3 29 29 H 1.08000 * 120.08152 * 359.97438 * 6 5 3 30 30 H 1.09000 * 113.61330 * 25.48063 * 10 8 7 31 31 H 1.09000 * 113.69853 * 254.50261 * 10 8 7 32 32 H 0.96998 * 120.00648 * 285.86859 * 13 11 10 33 33 H 1.07997 * 122.71003 * 179.97438 * 16 15 14 34 34 H 1.09001 * 109.47438 * 304.99894 * 18 17 16 35 35 H 0.96691 * 114.00079 * 179.97438 * 19 18 17 36 36 H 1.48504 * 110.00174 * 178.67930 * 20 18 17 37 37 H 1.48492 * 110.00227 * 299.99958 * 20 18 17 38 38 H 1.09007 * 113.61441 * 140.01789 * 22 11 10 39 39 H 1.08992 * 113.61774 * 270.92399 * 22 11 10 40 40 H 1.07999 * 119.84653 * 179.74854 * 23 7 6 41 41 H 1.07995 * 119.92581 * 180.25431 * 24 23 7 42 42 H 1.08003 * 120.07389 * 179.72326 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2003 0.0000 4 8 1.4020 2.2189 -0.0005 5 6 3.5388 1.2776 -0.0006 6 6 4.1758 2.5199 -0.0011 7 6 5.5540 2.5848 -0.0022 8 6 6.2434 3.9248 -0.0034 9 1 5.5610 4.7522 0.1917 10 6 7.5219 3.9641 0.8551 11 6 8.1484 4.8154 -0.2619 12 1 9.1888 4.5658 -0.4698 13 7 7.9311 6.2546 -0.0947 14 6 8.9744 7.0699 0.3157 15 7 10.1772 6.6620 0.5777 16 6 11.0490 7.5790 0.9581 17 6 10.5595 8.8175 1.0206 18 6 11.3246 10.0520 1.4227 19 8 12.3503 10.3108 0.4619 20 14 10.1624 11.5061 1.4971 21 16 8.8606 8.7584 0.5584 22 6 7.1509 4.1496 -1.2244 23 6 6.3044 1.4226 -0.0079 24 6 5.6794 0.1879 -0.0020 25 6 4.3024 0.1084 -0.0009 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0278 0.0005 29 1 3.5912 3.4279 -0.0015 30 1 7.9948 2.9898 0.9788 31 1 7.4011 4.4997 1.7967 32 1 7.0573 6.6370 -0.2711 33 1 12.0751 7.3441 1.1998 34 1 11.7756 9.8969 2.4028 35 1 12.8838 11.0932 0.6572 36 1 10.8984 12.7234 1.9234 37 1 9.5409 11.7283 0.1669 38 1 6.7306 4.8349 -1.9605 39 1 7.5224 3.2260 -1.6681 40 1 7.3829 1.4792 -0.0128 41 1 6.2712 -0.7155 -0.0023 42 1 3.8160 -0.8558 -0.0008 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_15508396_15704118.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 04:33:52 Heat of formation + Delta-G solvation = 0.267364 kcal Electronic energy + Delta-G solvation = -26225.083170 eV Core-core repulsion = 22265.041914 eV Total energy + Delta-G solvation = -3960.041255 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 347.102 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.79999 -41.21106 -40.46606 -39.10363 -37.91540 -37.57614 -35.33976 -32.47540 -32.21418 -31.19230 -28.73933 -26.92828 -26.65819 -26.08992 -25.18946 -24.34415 -22.91226 -22.17690 -21.05768 -20.16542 -19.23423 -18.80152 -18.57132 -18.26904 -17.55887 -17.47713 -17.05390 -16.66681 -16.27412 -16.05302 -15.90644 -15.70501 -15.40876 -14.91124 -14.74367 -14.63523 -14.58067 -14.29395 -14.08339 -14.01714 -13.50816 -13.23586 -13.15105 -12.92712 -12.80743 -12.64947 -12.46803 -12.38210 -11.93624 -11.90682 -11.79237 -11.76034 -11.24073 -11.02105 -10.71551 -10.28206 -10.21539 -10.07264 -9.74596 -8.73158 -5.03974 -0.38223 -0.08600 0.02329 0.31187 0.65678 1.23809 1.40961 1.52479 1.61257 1.88138 1.96508 2.15004 2.69054 3.42359 3.44518 3.57754 3.61498 3.69218 3.72999 3.88747 3.96330 3.97864 4.13976 4.16484 4.23687 4.26680 4.28797 4.42683 4.47707 4.63700 4.64627 4.72919 4.76803 4.80918 4.82579 4.96850 4.98526 5.05481 5.08758 5.16584 5.25978 5.29297 5.40594 5.55771 5.84617 5.89909 6.14981 6.56057 6.59488 7.00087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.357 6.357 3 C 0.506 3.494 4 O -0.540 6.540 5 C -0.147 4.147 6 C -0.064 4.064 7 C -0.082 4.082 8 C -0.070 4.070 9 H 0.102 0.898 10 C -0.138 4.138 11 C 0.135 3.865 12 H 0.094 0.906 13 N -0.669 5.669 14 C 0.319 3.681 15 N -0.572 5.572 16 C 0.104 3.896 17 C -0.271 4.271 18 C -0.024 4.024 19 O -0.556 6.556 20 Si 0.714 3.286 21 S 0.107 5.893 22 C -0.127 4.127 23 C -0.076 4.076 24 C -0.127 4.127 25 C -0.068 4.068 26 H 0.062 0.938 27 H 0.062 0.938 28 H 0.134 0.866 29 H 0.128 0.872 30 H 0.106 0.894 31 H 0.066 0.934 32 H 0.423 0.577 33 H 0.182 0.818 34 H 0.108 0.892 35 H 0.397 0.603 36 H -0.255 1.255 37 H -0.284 1.284 38 H 0.081 0.919 39 H 0.110 0.890 40 H 0.155 0.845 41 H 0.159 0.841 42 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.534 -2.384 2.090 3.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.274 6.274 3 C 0.353 3.647 4 O -0.432 6.432 5 C -0.148 4.148 6 C -0.082 4.082 7 C -0.082 4.082 8 C -0.088 4.088 9 H 0.120 0.880 10 C -0.177 4.177 11 C 0.027 3.973 12 H 0.113 0.887 13 N -0.308 5.308 14 C -0.051 4.051 15 N -0.298 5.298 16 C -0.047 4.047 17 C -0.394 4.394 18 C -0.137 4.137 19 O -0.367 6.367 20 Si 0.617 3.383 21 S 0.356 5.644 22 C -0.165 4.165 23 C -0.093 4.093 24 C -0.145 4.145 25 C -0.086 4.086 26 H 0.081 0.919 27 H 0.081 0.919 28 H 0.152 0.848 29 H 0.146 0.854 30 H 0.125 0.875 31 H 0.085 0.915 32 H 0.263 0.737 33 H 0.199 0.801 34 H 0.126 0.874 35 H 0.248 0.752 36 H -0.180 1.180 37 H -0.211 1.211 38 H 0.100 0.900 39 H 0.128 0.872 40 H 0.172 0.828 41 H 0.176 0.824 42 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -0.794 -1.833 1.348 2.410 hybrid contribution 1.058 0.417 -0.297 1.175 sum 0.264 -1.416 1.051 1.783 Atomic orbital electron populations 1.23584 0.74312 1.05945 1.02580 1.86531 1.25192 1.31845 1.83786 1.21648 0.89944 0.81400 0.71751 1.90819 1.67668 1.37085 1.47649 1.19176 0.88208 0.96108 1.11357 1.21212 0.94828 0.96362 0.95802 1.19742 0.91972 0.96063 1.00439 1.21652 0.95531 0.93809 0.97816 0.87975 1.23641 0.95121 1.01236 0.97676 1.21879 1.00279 0.78244 0.96897 0.88742 1.43784 1.09347 1.05902 1.71811 1.23868 0.91292 0.93421 0.96562 1.66471 1.00733 1.37038 1.25588 1.21490 0.99824 0.86785 0.96594 1.24592 0.96152 0.99249 1.19382 1.23901 0.94731 1.00777 0.94260 1.86572 1.47431 1.51405 1.51282 0.94470 0.83329 0.76770 0.83773 1.83909 1.09798 1.03412 1.67284 1.23444 0.95177 1.01902 0.95971 1.21658 1.01674 0.91378 0.94623 1.21511 0.93885 0.99288 0.99804 1.21670 0.94718 0.97703 0.94516 0.91945 0.91931 0.84763 0.85443 0.87547 0.91508 0.73732 0.80121 0.87411 0.75219 1.17998 1.21077 0.90026 0.87164 0.82784 0.82385 0.83527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.01 10.56 113.37 1.20 1.19 16 2 O -0.36 -1.71 9.82 -56.18 -0.55 -2.26 16 3 C 0.51 4.14 7.90 70.33 0.56 4.70 16 4 O -0.54 -7.44 16.14 19.95 0.32 -7.12 16 5 C -0.15 -0.63 5.87 -20.10 -0.12 -0.74 16 6 C -0.06 -0.17 9.25 22.54 0.21 0.04 16 7 C -0.08 0.16 5.29 -19.90 -0.11 0.06 16 8 C -0.07 0.34 3.86 -10.92 -0.04 0.29 16 9 H 0.10 -0.53 8.09 -2.38 -0.02 -0.55 16 10 C -0.14 0.60 7.27 31.21 0.23 0.82 16 11 C 0.13 -0.40 4.42 45.52 0.20 -0.20 16 12 H 0.09 0.02 7.70 -2.39 -0.02 0.01 16 13 N -0.67 1.02 5.42 -327.88 -1.78 -0.76 16 14 C 0.32 1.16 8.09 179.32 1.45 2.61 16 15 N -0.57 -4.07 9.85 -202.02 -1.99 -6.06 16 16 C 0.10 0.59 11.24 83.54 0.94 1.53 16 17 C -0.27 -1.06 5.76 24.57 0.14 -0.92 16 18 C -0.02 0.00 2.98 71.24 0.21 0.21 16 19 O -0.56 -1.31 12.86 -148.98 -1.92 -3.22 16 20 Si 0.71 -0.55 31.06 68.60 2.13 1.58 16 21 S 0.11 0.23 20.59 -56.49 -1.16 -0.93 16 22 C -0.13 0.76 7.29 31.12 0.23 0.98 16 23 C -0.08 0.34 8.59 22.33 0.19 0.53 16 24 C -0.13 0.52 10.03 22.23 0.22 0.74 16 25 C -0.07 0.02 9.62 22.53 0.22 0.24 16 26 H 0.06 0.03 8.14 -2.39 -0.02 0.01 16 27 H 0.06 0.02 8.14 -2.39 -0.02 0.00 16 28 H 0.13 -0.89 8.14 -2.38 -0.02 -0.91 16 29 H 0.13 0.47 7.64 -2.91 -0.02 0.45 16 30 H 0.11 -0.68 6.33 -2.39 -0.02 -0.69 16 31 H 0.07 -0.11 8.14 -2.39 -0.02 -0.13 16 32 H 0.42 -2.35 8.83 -92.71 -0.82 -3.17 16 33 H 0.18 0.51 8.06 -2.91 -0.02 0.49 16 34 H 0.11 -0.52 7.96 -2.39 -0.02 -0.54 16 35 H 0.40 -2.48 8.74 -74.06 -0.65 -3.13 16 36 H -0.26 -0.37 7.11 99.48 0.71 0.33 16 37 H -0.28 -1.90 7.11 99.48 0.71 -1.19 16 38 H 0.08 -0.49 8.14 -2.38 -0.02 -0.51 16 39 H 0.11 -0.82 7.71 -2.39 -0.02 -0.84 16 40 H 0.15 -1.42 6.67 -2.91 -0.02 -1.44 16 41 H 0.16 -1.44 8.06 -2.91 -0.02 -1.47 16 42 H 0.15 -0.40 7.61 -2.91 -0.02 -0.43 16 Total: 0.00 -20.83 372.06 0.43 -20.40 By element: Atomic # 1 Polarization: -13.35 SS G_CDS: -0.35 Total: -13.70 kcal Atomic # 6 Polarization: 6.35 SS G_CDS: 5.73 Total: 12.07 kcal Atomic # 7 Polarization: -3.05 SS G_CDS: -3.77 Total: -6.82 kcal Atomic # 8 Polarization: -10.46 SS G_CDS: -2.15 Total: -12.60 kcal Atomic # 14 Polarization: -0.55 SS G_CDS: 2.13 Total: 1.58 kcal Atomic # 16 Polarization: 0.23 SS G_CDS: -1.16 Total: -0.93 kcal Total: -20.83 0.43 -20.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_15508396_15704118.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.672 kcal (2) G-P(sol) polarization free energy of solvation -20.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.404 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds