Wall clock time and date at job start Mon Mar 8 2021 04:33:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34713 * 116.99808 * 2 1 4 4 O 1.21464 * 119.99797 * 0.02562 * 3 2 1 5 5 C 1.47730 * 120.00127 * 179.97438 * 3 2 1 6 6 C 1.39608 * 120.14620 * 0.02562 * 5 3 2 7 7 C 1.37967 * 119.84875 * 180.02562 * 6 5 3 8 8 C 1.38348 * 120.14834 * 0.02562 * 7 6 5 9 9 C 1.38390 * 120.29911 * 359.97438 * 8 7 6 10 10 C 1.50701 * 119.92257 * 179.97438 * 9 8 7 11 11 H 1.09000 * 112.85080 * 191.19492 * 10 9 8 12 12 C 1.54047 * 113.69719 * 322.46791 * 10 9 8 13 13 C 1.53781 * 86.98682 * 139.98981 * 12 10 9 14 14 H 1.09007 * 113.61260 * 219.97903 * 13 12 10 15 15 N 1.46502 * 113.61404 * 89.16738 * 13 12 10 16 16 C 1.38604 * 120.00465 * 105.86026 * 15 13 12 17 17 N 1.29687 * 124.95151 * 179.97438 * 16 15 13 18 18 C 1.32123 * 116.86673 * 180.02562 * 17 16 15 19 19 C 1.50694 * 122.70798 * 179.73260 * 18 17 16 20 20 O 1.42903 * 109.47372 * 224.55280 * 19 18 17 21 21 Si 1.86298 * 109.47259 * 344.55448 * 19 18 17 22 22 C 1.33323 * 114.57959 * 0.02562 * 18 17 16 23 23 C 1.50704 * 125.95212 * 179.97438 * 22 18 17 24 24 S 1.70970 * 124.94808 * 0.02647 * 16 15 13 25 25 C 1.53773 * 87.17208 * 334.56959 * 13 12 10 26 26 C 1.37916 * 120.15471 * 0.25698 * 9 8 7 27 27 H 1.08998 * 109.47261 * 299.99318 * 1 2 3 28 28 H 1.09000 * 109.47345 * 60.00149 * 1 2 3 29 29 H 1.09003 * 109.46848 * 179.97438 * 1 2 3 30 30 H 1.08003 * 120.08090 * 0.04577 * 6 5 3 31 31 H 1.07997 * 119.92987 * 179.97438 * 7 6 5 32 32 H 1.07993 * 119.85241 * 179.97438 * 8 7 6 33 33 H 1.09003 * 113.61408 * 25.48190 * 12 10 9 34 34 H 1.09002 * 113.69892 * 254.50869 * 12 10 9 35 35 H 0.96996 * 119.99397 * 285.85979 * 15 13 12 36 36 H 1.09003 * 109.47204 * 104.55709 * 19 18 17 37 37 H 0.96704 * 113.99270 * 59.99774 * 20 19 18 38 38 H 1.48501 * 110.00195 * 58.68169 * 21 19 18 39 39 H 1.48506 * 110.00009 * 180.02562 * 21 19 18 40 40 H 1.08995 * 109.46763 * 84.34958 * 23 22 18 41 41 H 1.08998 * 109.46971 * 204.35254 * 23 22 18 42 42 H 1.09000 * 109.46549 * 324.35000 * 23 22 18 43 43 H 1.09001 * 113.61334 * 140.02326 * 25 13 12 44 44 H 1.08992 * 113.61635 * 270.92400 * 25 13 12 45 45 H 1.08001 * 120.07904 * 179.72245 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0635 1.2003 0.0000 4 8 1.4019 2.2190 0.0005 5 6 3.5388 1.2777 0.0006 6 6 4.3022 0.1089 0.0006 7 6 5.6796 0.1883 0.0016 8 6 6.3044 1.4226 0.0033 9 6 5.5536 2.5852 0.0033 10 6 6.2430 3.9253 0.0056 11 1 5.5602 4.7522 0.2004 12 6 7.5197 3.9632 0.8669 13 6 8.1485 4.8164 -0.2474 14 1 9.1895 4.5670 -0.4534 15 7 7.9310 6.2553 -0.0784 16 6 8.9732 7.0699 0.3355 17 7 8.8882 8.3514 0.5152 18 6 9.9844 8.9727 0.9127 19 6 10.0354 10.4590 1.1557 20 8 11.2255 10.9961 0.5749 21 14 8.5466 11.2666 0.3798 22 6 11.0434 8.1792 1.0754 23 6 12.4162 8.6156 1.5184 24 16 10.5585 6.5319 0.6823 25 6 7.1532 4.1520 -1.2131 26 6 4.1760 2.5203 0.0070 27 1 -0.3634 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.8157 -0.8554 -0.0006 31 1 6.2714 -0.7151 0.0021 32 1 7.3828 1.4793 0.0045 33 1 7.9923 2.9888 0.9902 34 1 7.3968 4.4973 1.8091 35 1 7.0576 6.6378 -0.2562 36 1 10.0356 10.6520 2.2285 37 1 11.2927 10.8606 -0.3802 38 1 7.3019 10.6940 0.9525 39 1 8.5854 12.7329 0.6119 40 1 12.4490 8.6620 2.6069 41 1 13.1573 7.8999 1.1627 42 1 12.6349 9.6006 1.1060 43 1 6.7345 4.8384 -1.9491 44 1 7.5258 3.2291 -1.6574 45 1 3.5913 3.4283 0.0115 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_15508396_15704122.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 04:33:56 Heat of formation + Delta-G solvation = -9.824967 kcal Electronic energy + Delta-G solvation = -28417.586862 eV Core-core repulsion = 24301.570351 eV Total energy + Delta-G solvation = -4116.016511 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 361.118 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.81813 -41.25131 -40.82628 -39.32991 -37.68695 -37.40195 -35.46136 -32.93545 -32.40784 -31.89737 -29.17263 -28.72321 -27.00748 -26.43448 -25.57593 -25.13181 -24.29123 -23.07334 -22.14044 -20.77901 -20.39579 -19.03055 -18.68950 -18.18238 -17.84302 -17.41354 -17.34255 -17.14256 -16.77551 -16.61668 -16.15943 -16.01007 -15.55799 -15.44169 -15.07948 -14.74500 -14.65375 -14.52764 -14.31565 -14.11458 -13.97859 -13.73653 -13.69686 -13.34352 -13.25193 -13.19051 -13.03649 -12.81754 -12.65860 -12.26874 -12.02214 -11.97524 -11.84683 -11.80249 -11.69596 -11.41697 -10.99081 -10.54663 -10.30196 -10.16019 -9.99399 -9.87620 -8.64715 -4.77359 -0.40489 0.02852 0.18088 0.19369 0.79137 1.46904 1.48448 1.64696 1.78539 1.88037 1.97056 2.25667 2.60537 3.14873 3.34795 3.39753 3.43940 3.54741 3.59564 3.64823 3.75431 3.92030 3.97001 4.11548 4.14452 4.17153 4.23356 4.25453 4.28291 4.38548 4.45500 4.51412 4.54786 4.57017 4.64988 4.75326 4.78543 4.79024 4.81636 4.89545 4.94485 5.14904 5.17077 5.18952 5.32595 5.34623 5.41894 5.61085 5.70021 6.23940 6.51729 6.70704 6.96078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.355 6.355 3 C 0.507 3.493 4 O -0.504 6.504 5 C -0.124 4.124 6 C -0.064 4.064 7 C -0.128 4.128 8 C -0.080 4.080 9 C -0.083 4.083 10 C -0.072 4.072 11 H 0.102 0.898 12 C -0.149 4.149 13 C 0.126 3.874 14 H 0.098 0.902 15 N -0.677 5.677 16 C 0.320 3.680 17 N -0.542 5.542 18 C 0.062 3.938 19 C -0.035 4.035 20 O -0.535 6.535 21 Si 0.722 3.278 22 C -0.230 4.230 23 C -0.078 4.078 24 S 0.101 5.899 25 C -0.132 4.132 26 C -0.050 4.050 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.105 0.895 30 H 0.139 0.861 31 H 0.134 0.866 32 H 0.131 0.869 33 H 0.100 0.900 34 H 0.080 0.920 35 H 0.414 0.586 36 H 0.118 0.882 37 H 0.380 0.620 38 H -0.257 1.257 39 H -0.264 1.264 40 H 0.068 0.932 41 H 0.062 0.938 42 H 0.101 0.899 43 H 0.083 0.917 44 H 0.104 0.896 45 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.470 -5.428 -2.794 6.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.272 6.272 3 C 0.352 3.648 4 O -0.392 6.392 5 C -0.125 4.125 6 C -0.082 4.082 7 C -0.146 4.146 8 C -0.098 4.098 9 C -0.083 4.083 10 C -0.090 4.090 11 H 0.120 0.880 12 C -0.188 4.188 13 C 0.019 3.981 14 H 0.116 0.884 15 N -0.317 5.317 16 C -0.051 4.051 17 N -0.268 5.268 18 C -0.068 4.068 19 C -0.148 4.148 20 O -0.340 6.340 21 Si 0.623 3.377 22 C -0.353 4.353 23 C -0.137 4.137 24 S 0.350 5.650 25 C -0.170 4.170 26 C -0.068 4.068 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.123 0.877 30 H 0.157 0.843 31 H 0.152 0.848 32 H 0.149 0.851 33 H 0.118 0.882 34 H 0.098 0.902 35 H 0.252 0.748 36 H 0.136 0.864 37 H 0.227 0.773 38 H -0.182 1.182 39 H -0.190 1.190 40 H 0.086 0.914 41 H 0.081 0.919 42 H 0.119 0.881 43 H 0.102 0.898 44 H 0.122 0.878 45 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 1.648 -5.393 -2.184 6.048 hybrid contribution -0.538 0.459 0.652 0.962 sum 1.110 -4.934 -1.532 5.284 Atomic orbital electron populations 1.23342 0.75410 1.04123 1.02870 1.86531 1.23994 1.32444 1.84191 1.21233 0.89166 0.81601 0.72792 1.90856 1.66795 1.36050 1.45545 1.19094 0.89034 0.95039 1.09360 1.21520 0.94043 0.98014 0.94646 1.21194 0.94331 0.98183 1.00907 1.21324 1.00443 0.91808 0.96216 1.19580 0.92683 0.94954 1.01090 1.21631 0.95620 0.94546 0.97244 0.87963 1.23750 0.95671 1.00969 0.98420 1.21958 1.00065 0.78649 0.97418 0.88390 1.43573 1.10489 1.04771 1.72888 1.23212 0.93370 0.90556 0.97960 1.65889 1.29965 1.05608 1.25383 1.20075 0.87377 0.97864 1.01473 1.24564 0.98650 0.88973 1.02611 1.86455 1.41070 1.79498 1.26973 0.93750 0.75776 0.76689 0.91436 1.25190 1.02279 0.93299 1.14548 1.20354 0.88989 1.03096 1.01309 1.83969 1.03482 1.10511 1.66989 1.23426 0.95585 1.01624 0.96339 1.21165 0.93998 0.96839 0.94779 0.91621 0.91613 0.87650 0.84317 0.84773 0.85078 0.88190 0.90155 0.74793 0.86430 0.77267 1.18151 1.19039 0.91374 0.91925 0.88112 0.89828 0.87799 0.84520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 -0.02 10.56 101.05 1.07 1.05 16 2 O -0.36 -0.64 9.82 -40.53 -0.40 -1.04 16 3 C 0.51 1.60 7.90 34.61 0.27 1.87 16 4 O -0.50 -2.89 16.14 -19.24 -0.31 -3.20 16 5 C -0.12 -0.17 5.87 -104.98 -0.62 -0.79 16 6 C -0.06 0.03 9.62 -39.17 -0.38 -0.35 16 7 C -0.13 0.25 10.03 -39.64 -0.40 -0.15 16 8 C -0.08 0.18 8.61 -39.48 -0.34 -0.16 16 9 C -0.08 0.11 5.29 -104.68 -0.55 -0.44 16 10 C -0.07 0.20 3.86 -90.82 -0.35 -0.15 16 11 H 0.10 -0.26 8.09 -51.93 -0.42 -0.68 16 12 C -0.15 0.45 7.27 -25.78 -0.19 0.27 16 13 C 0.13 -0.37 4.28 -67.12 -0.29 -0.66 16 14 H 0.10 -0.32 7.11 -51.92 -0.37 -0.68 16 15 N -0.68 0.71 5.42 -54.99 -0.30 0.41 16 16 C 0.32 0.41 8.24 -87.69 -0.72 -0.31 16 17 N -0.54 -1.55 8.61 -11.36 -0.10 -1.65 16 18 C 0.06 0.14 6.00 -84.19 -0.51 -0.37 16 19 C -0.03 -0.04 2.74 36.00 0.10 0.05 16 20 O -0.54 -0.12 10.22 -35.23 -0.36 -0.48 16 21 Si 0.72 0.96 31.88 -169.99 -5.42 -4.46 16 22 C -0.23 -0.36 6.49 -36.02 -0.23 -0.59 16 23 C -0.08 -0.01 9.98 36.01 0.36 0.35 16 24 S 0.10 0.04 21.71 -107.50 -2.33 -2.29 16 25 C -0.13 0.49 7.29 -25.92 -0.19 0.30 16 26 C -0.05 -0.03 9.25 -39.17 -0.36 -0.39 16 27 H 0.07 -0.02 8.14 -51.93 -0.42 -0.45 16 28 H 0.07 -0.03 8.14 -51.93 -0.42 -0.45 16 29 H 0.11 -0.33 8.14 -51.93 -0.42 -0.75 16 30 H 0.14 -0.22 7.61 -52.48 -0.40 -0.62 16 31 H 0.13 -0.53 8.06 -52.49 -0.42 -0.95 16 32 H 0.13 -0.59 6.65 -52.49 -0.35 -0.94 16 33 H 0.10 -0.41 6.32 -51.93 -0.33 -0.74 16 34 H 0.08 -0.13 8.14 -51.93 -0.42 -0.55 16 35 H 0.41 -0.62 8.83 -40.82 -0.36 -0.98 16 36 H 0.12 0.18 7.96 -51.93 -0.41 -0.23 16 37 H 0.38 -1.21 8.70 45.56 0.40 -0.81 16 38 H -0.26 -1.24 7.11 56.52 0.40 -0.84 16 39 H -0.26 -0.99 7.11 56.52 0.40 -0.59 16 40 H 0.07 0.02 8.14 -51.93 -0.42 -0.41 16 41 H 0.06 -0.04 8.14 -51.93 -0.42 -0.47 16 42 H 0.10 0.00 5.67 -51.93 -0.29 -0.29 16 43 H 0.08 -0.29 8.14 -51.93 -0.42 -0.72 16 44 H 0.10 -0.46 7.72 -51.93 -0.40 -0.86 16 45 H 0.14 0.11 7.64 -52.49 -0.40 -0.29 16 LS Contribution 388.62 15.07 5.86 5.86 Total: 0.00 -8.01 388.62 -12.60 -20.61 By element: Atomic # 1 Polarization: -7.38 SS G_CDS: -5.92 Total: -13.30 kcal Atomic # 6 Polarization: 2.86 SS G_CDS: -3.32 Total: -0.46 kcal Atomic # 7 Polarization: -0.84 SS G_CDS: -0.40 Total: -1.24 kcal Atomic # 8 Polarization: -3.65 SS G_CDS: -1.07 Total: -4.72 kcal Atomic # 14 Polarization: 0.96 SS G_CDS: -5.42 Total: -4.46 kcal Atomic # 16 Polarization: 0.04 SS G_CDS: -2.33 Total: -2.29 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -8.01 -12.60 -20.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_15508396_15704122.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.785 kcal (2) G-P(sol) polarization free energy of solvation -8.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds