Wall clock time and date at job start Mon Mar 8 2021 04:33:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34713 * 116.99808 * 2 1 4 4 O 1.21464 * 119.99797 * 0.02562 * 3 2 1 5 5 C 1.47730 * 120.00127 * 179.97438 * 3 2 1 6 6 C 1.39608 * 120.14620 * 0.02562 * 5 3 2 7 7 C 1.37967 * 119.84875 * 180.02562 * 6 5 3 8 8 C 1.38348 * 120.14834 * 0.02562 * 7 6 5 9 9 C 1.38390 * 120.29911 * 359.97438 * 8 7 6 10 10 C 1.50701 * 119.92257 * 179.97438 * 9 8 7 11 11 H 1.09000 * 112.85080 * 191.19492 * 10 9 8 12 12 C 1.54047 * 113.69719 * 322.46791 * 10 9 8 13 13 C 1.53781 * 86.98682 * 139.98981 * 12 10 9 14 14 H 1.09007 * 113.61260 * 219.97903 * 13 12 10 15 15 N 1.46502 * 113.61404 * 89.16738 * 13 12 10 16 16 C 1.38604 * 120.00465 * 105.86026 * 15 13 12 17 17 N 1.29687 * 124.95151 * 179.97438 * 16 15 13 18 18 C 1.32123 * 116.86673 * 180.02562 * 17 16 15 19 19 C 1.50694 * 122.70798 * 179.73260 * 18 17 16 20 20 O 1.42903 * 109.47372 * 224.55280 * 19 18 17 21 21 Si 1.86298 * 109.47259 * 344.55448 * 19 18 17 22 22 C 1.33323 * 114.57959 * 0.02562 * 18 17 16 23 23 C 1.50704 * 125.95212 * 179.97438 * 22 18 17 24 24 S 1.70970 * 124.94808 * 0.02647 * 16 15 13 25 25 C 1.53773 * 87.17208 * 334.56959 * 13 12 10 26 26 C 1.37916 * 120.15471 * 0.25698 * 9 8 7 27 27 H 1.08998 * 109.47261 * 299.99318 * 1 2 3 28 28 H 1.09000 * 109.47345 * 60.00149 * 1 2 3 29 29 H 1.09003 * 109.46848 * 179.97438 * 1 2 3 30 30 H 1.08003 * 120.08090 * 0.04577 * 6 5 3 31 31 H 1.07997 * 119.92987 * 179.97438 * 7 6 5 32 32 H 1.07993 * 119.85241 * 179.97438 * 8 7 6 33 33 H 1.09003 * 113.61408 * 25.48190 * 12 10 9 34 34 H 1.09002 * 113.69892 * 254.50869 * 12 10 9 35 35 H 0.96996 * 119.99397 * 285.85979 * 15 13 12 36 36 H 1.09003 * 109.47204 * 104.55709 * 19 18 17 37 37 H 0.96704 * 113.99270 * 59.99774 * 20 19 18 38 38 H 1.48501 * 110.00195 * 58.68169 * 21 19 18 39 39 H 1.48506 * 110.00009 * 180.02562 * 21 19 18 40 40 H 1.08995 * 109.46763 * 84.34958 * 23 22 18 41 41 H 1.08998 * 109.46971 * 204.35254 * 23 22 18 42 42 H 1.09000 * 109.46549 * 324.35000 * 23 22 18 43 43 H 1.09001 * 113.61334 * 140.02326 * 25 13 12 44 44 H 1.08992 * 113.61635 * 270.92400 * 25 13 12 45 45 H 1.08001 * 120.07904 * 179.72245 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0635 1.2003 0.0000 4 8 1.4019 2.2190 0.0005 5 6 3.5388 1.2777 0.0006 6 6 4.3022 0.1089 0.0006 7 6 5.6796 0.1883 0.0016 8 6 6.3044 1.4226 0.0033 9 6 5.5536 2.5852 0.0033 10 6 6.2430 3.9253 0.0056 11 1 5.5602 4.7522 0.2004 12 6 7.5197 3.9632 0.8669 13 6 8.1485 4.8164 -0.2474 14 1 9.1895 4.5670 -0.4534 15 7 7.9310 6.2553 -0.0784 16 6 8.9732 7.0699 0.3355 17 7 8.8882 8.3514 0.5152 18 6 9.9844 8.9727 0.9127 19 6 10.0354 10.4590 1.1557 20 8 11.2255 10.9961 0.5749 21 14 8.5466 11.2666 0.3798 22 6 11.0434 8.1792 1.0754 23 6 12.4162 8.6156 1.5184 24 16 10.5585 6.5319 0.6823 25 6 7.1532 4.1520 -1.2131 26 6 4.1760 2.5203 0.0070 27 1 -0.3634 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.8157 -0.8554 -0.0006 31 1 6.2714 -0.7151 0.0021 32 1 7.3828 1.4793 0.0045 33 1 7.9923 2.9888 0.9902 34 1 7.3968 4.4973 1.8091 35 1 7.0576 6.6378 -0.2562 36 1 10.0356 10.6520 2.2285 37 1 11.2927 10.8606 -0.3802 38 1 7.3019 10.6940 0.9525 39 1 8.5854 12.7329 0.6119 40 1 12.4490 8.6620 2.6069 41 1 13.1573 7.8999 1.1627 42 1 12.6349 9.6006 1.1060 43 1 6.7345 4.8384 -1.9491 44 1 7.5258 3.2291 -1.6574 45 1 3.5913 3.4283 0.0115 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_15508396_15704122.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 04:33:55 Heat of formation + Delta-G solvation = -4.707962 kcal Electronic energy + Delta-G solvation = -28417.364972 eV Core-core repulsion = 24301.570351 eV Total energy + Delta-G solvation = -4115.794621 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 361.118 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.82602 -41.27428 -40.84421 -39.24058 -37.71298 -37.59297 -35.40651 -32.91264 -32.34096 -31.83115 -29.21255 -28.72380 -26.75114 -26.30840 -25.58869 -25.13606 -24.30874 -22.96163 -22.14522 -20.79488 -20.32543 -19.03016 -18.67646 -18.29358 -17.85724 -17.50514 -17.39870 -17.05902 -16.68673 -16.61496 -16.04246 -15.93756 -15.63614 -15.42173 -14.98135 -14.71287 -14.66709 -14.45813 -14.37811 -14.19764 -13.95920 -13.76996 -13.48534 -13.33768 -13.17874 -13.16254 -12.88432 -12.78294 -12.64851 -12.37806 -12.07615 -11.93452 -11.87424 -11.80527 -11.78730 -11.30315 -10.92261 -10.62360 -10.36594 -10.08758 -10.03713 -9.76601 -8.64587 -4.93376 -0.40050 -0.02271 0.15747 0.29460 0.74002 1.34494 1.38849 1.58886 1.70760 1.81368 1.90301 2.07213 2.67383 3.36657 3.40960 3.52610 3.56476 3.59147 3.61568 3.84936 3.92140 4.10015 4.12040 4.16127 4.20959 4.24090 4.26399 4.36314 4.39327 4.44173 4.47983 4.61983 4.74179 4.76025 4.79196 4.81176 4.90407 4.95185 4.96582 5.01778 5.08162 5.14293 5.20582 5.25679 5.36438 5.39109 5.51568 5.73326 5.83840 6.28671 6.53550 6.66331 6.93886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.357 6.357 3 C 0.504 3.496 4 O -0.542 6.542 5 C -0.148 4.148 6 C -0.068 4.068 7 C -0.126 4.126 8 C -0.073 4.073 9 C -0.082 4.082 10 C -0.074 4.074 11 H 0.092 0.908 12 C -0.143 4.143 13 C 0.124 3.876 14 H 0.108 0.892 15 N -0.674 5.674 16 C 0.310 3.690 17 N -0.571 5.571 18 C 0.050 3.950 19 C -0.030 4.030 20 O -0.539 6.539 21 Si 0.792 3.208 22 C -0.243 4.243 23 C -0.076 4.076 24 S 0.131 5.869 25 C -0.121 4.121 26 C -0.067 4.067 27 H 0.061 0.939 28 H 0.062 0.938 29 H 0.135 0.865 30 H 0.147 0.853 31 H 0.161 0.839 32 H 0.162 0.838 33 H 0.119 0.881 34 H 0.065 0.935 35 H 0.413 0.587 36 H 0.113 0.887 37 H 0.395 0.605 38 H -0.308 1.308 39 H -0.296 1.296 40 H 0.066 0.934 41 H 0.072 0.928 42 H 0.101 0.899 43 H 0.081 0.919 44 H 0.121 0.879 45 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.631 -7.262 -3.336 9.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.273 6.273 3 C 0.352 3.648 4 O -0.434 6.434 5 C -0.149 4.149 6 C -0.086 4.086 7 C -0.143 4.143 8 C -0.090 4.090 9 C -0.082 4.082 10 C -0.093 4.093 11 H 0.111 0.889 12 C -0.182 4.182 13 C 0.018 3.982 14 H 0.126 0.874 15 N -0.313 5.313 16 C -0.061 4.061 17 N -0.299 5.299 18 C -0.080 4.080 19 C -0.143 4.143 20 O -0.346 6.346 21 Si 0.700 3.300 22 C -0.366 4.366 23 C -0.135 4.135 24 S 0.381 5.619 25 C -0.159 4.159 26 C -0.086 4.086 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.153 0.847 30 H 0.165 0.835 31 H 0.179 0.821 32 H 0.179 0.821 33 H 0.137 0.863 34 H 0.083 0.917 35 H 0.252 0.748 36 H 0.131 0.869 37 H 0.245 0.755 38 H -0.236 1.236 39 H -0.225 1.225 40 H 0.084 0.916 41 H 0.091 0.909 42 H 0.120 0.880 43 H 0.100 0.900 44 H 0.139 0.861 45 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 3.824 -7.265 -2.755 8.660 hybrid contribution -1.262 0.971 0.838 1.799 sum 2.562 -6.294 -1.918 7.061 Atomic orbital electron populations 1.23585 0.74336 1.05976 1.02532 1.86529 1.25167 1.31792 1.83779 1.21697 0.90041 0.81388 0.71724 1.90822 1.67730 1.37171 1.47705 1.19173 0.88137 0.96148 1.11451 1.21689 0.94888 0.97577 0.94438 1.21542 0.93739 0.99452 0.99601 1.21686 1.01878 0.91062 0.94415 1.19721 0.91837 0.96101 1.00527 1.21628 0.95684 0.93668 0.98271 0.88928 1.23759 0.95294 1.01633 0.97488 1.22091 1.00778 0.77506 0.97827 0.87426 1.43772 1.10068 1.05442 1.72051 1.23473 0.94384 0.90533 0.97705 1.65878 1.30680 1.06635 1.26712 1.20163 0.87603 0.98196 1.02053 1.24441 0.98751 0.88858 1.02295 1.86423 1.40338 1.79327 1.28496 0.92921 0.73145 0.73488 0.90435 1.25431 1.02648 0.94072 1.14468 1.20363 0.88536 1.03426 1.01155 1.83750 1.02268 1.09406 1.66508 1.23414 0.94654 1.02111 0.95707 1.21197 0.95068 0.96223 0.96079 0.92047 0.91953 0.84667 0.83542 0.82103 0.82073 0.86270 0.91651 0.74815 0.86936 0.75463 1.23555 1.22468 0.91568 0.90932 0.88036 0.90031 0.86111 0.86011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.00 10.56 113.37 1.20 1.20 16 2 O -0.36 -1.72 9.82 -56.22 -0.55 -2.27 16 3 C 0.50 4.25 7.90 70.33 0.56 4.81 16 4 O -0.54 -7.84 16.14 19.95 0.32 -7.52 16 5 C -0.15 -0.60 5.87 -20.10 -0.12 -0.72 16 6 C -0.07 0.08 9.62 22.54 0.22 0.30 16 7 C -0.13 0.73 10.03 22.23 0.22 0.95 16 8 C -0.07 0.49 8.61 22.33 0.19 0.69 16 9 C -0.08 0.25 5.29 -19.90 -0.11 0.15 16 10 C -0.07 0.43 3.86 -10.92 -0.04 0.39 16 11 H 0.09 -0.36 8.09 -2.39 -0.02 -0.38 16 12 C -0.14 1.04 7.27 31.21 0.23 1.26 16 13 C 0.12 -0.88 4.28 45.51 0.19 -0.68 16 14 H 0.11 -0.92 7.11 -2.38 -0.02 -0.94 16 15 N -0.67 1.40 5.42 -327.90 -1.78 -0.37 16 16 C 0.31 0.80 8.24 179.32 1.48 2.28 16 17 N -0.57 -3.67 8.61 -189.87 -1.63 -5.31 16 18 C 0.05 0.24 6.00 41.40 0.25 0.49 16 19 C -0.03 -0.09 2.74 71.23 0.20 0.10 16 20 O -0.54 -0.10 10.22 -148.98 -1.52 -1.63 16 21 Si 0.79 3.24 31.88 68.60 2.19 5.42 16 22 C -0.24 -0.67 6.49 24.58 0.16 -0.51 16 23 C -0.08 0.02 9.98 71.24 0.71 0.74 16 24 S 0.13 0.00 21.71 -56.49 -1.23 -1.23 16 25 C -0.12 1.05 7.29 31.12 0.23 1.28 16 26 C -0.07 -0.18 9.25 22.53 0.21 0.02 16 27 H 0.06 0.05 8.14 -2.39 -0.02 0.03 16 28 H 0.06 0.04 8.14 -2.39 -0.02 0.02 16 29 H 0.14 -0.89 8.14 -2.39 -0.02 -0.91 16 30 H 0.15 -0.51 7.61 -2.91 -0.02 -0.53 16 31 H 0.16 -1.80 8.06 -2.91 -0.02 -1.82 16 32 H 0.16 -2.08 6.65 -2.91 -0.02 -2.10 16 33 H 0.12 -1.32 6.32 -2.39 -0.02 -1.34 16 34 H 0.06 -0.23 8.14 -2.39 -0.02 -0.25 16 35 H 0.41 -0.92 8.83 -92.71 -0.82 -1.74 16 36 H 0.11 0.45 7.96 -2.39 -0.02 0.43 16 37 H 0.40 -2.76 8.70 -74.05 -0.64 -3.40 16 38 H -0.31 -3.86 7.11 99.48 0.71 -3.15 16 39 H -0.30 -2.70 7.11 99.48 0.71 -2.00 16 40 H 0.07 0.01 8.14 -2.39 -0.02 -0.01 16 41 H 0.07 -0.18 8.14 -2.39 -0.02 -0.20 16 42 H 0.10 -0.05 5.67 -2.39 -0.01 -0.07 16 43 H 0.08 -0.62 8.14 -2.39 -0.02 -0.64 16 44 H 0.12 -1.41 7.72 -2.39 -0.02 -1.43 16 45 H 0.12 0.58 7.64 -2.91 -0.02 0.56 16 Total: 0.00 -21.23 388.62 1.19 -20.04 By element: Atomic # 1 Polarization: -19.50 SS G_CDS: -0.37 Total: -19.88 kcal Atomic # 6 Polarization: 6.97 SS G_CDS: 5.77 Total: 12.74 kcal Atomic # 7 Polarization: -2.27 SS G_CDS: -3.41 Total: -5.68 kcal Atomic # 8 Polarization: -9.67 SS G_CDS: -1.75 Total: -11.42 kcal Atomic # 14 Polarization: 3.24 SS G_CDS: 2.19 Total: 5.42 kcal Atomic # 16 Polarization: 0.00 SS G_CDS: -1.23 Total: -1.23 kcal Total: -21.23 1.19 -20.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_15508396_15704122.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.334 kcal (2) G-P(sol) polarization free energy of solvation -21.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds