Wall clock time and date at job start Mon Mar 8 2021 04:34:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34711 * 116.99872 * 2 1 4 4 O 1.21467 * 120.00447 * 359.97438 * 3 2 1 5 5 C 1.47734 * 119.99762 * 180.02562 * 3 2 1 6 6 C 1.39613 * 120.14761 * 180.29231 * 5 3 2 7 7 C 1.37959 * 119.84543 * 180.26898 * 6 5 3 8 8 C 1.50697 * 119.92593 * 179.70394 * 7 6 5 9 9 H 1.09002 * 112.84782 * 9.39504 * 8 7 6 10 10 C 1.53786 * 113.61519 * 140.58914 * 8 7 6 11 11 C 1.54049 * 86.98426 * 140.01979 * 10 8 7 12 12 H 1.09005 * 113.62125 * 220.02158 * 11 10 8 13 13 N 1.46504 * 113.68747 * 89.12986 * 11 10 8 14 14 C 1.39142 * 120.00236 * 107.46867 * 13 11 10 15 15 N 1.32342 * 119.71598 * 359.72868 * 14 13 11 16 16 C 1.32005 * 121.64594 * 179.71495 * 15 14 13 17 17 C 1.37987 * 120.89802 * 0.56136 * 16 15 14 18 18 C 1.50701 * 120.32549 * 179.75003 * 17 16 15 19 19 O 1.42903 * 109.46975 * 119.97691 * 18 17 16 20 20 Si 1.86301 * 109.47184 * 359.97438 * 18 17 16 21 21 C 1.38898 * 119.34967 * 359.72506 * 17 16 15 22 22 C 1.38449 * 118.48260 * 0.02562 * 21 17 16 23 23 F 1.35108 * 120.46953 * 180.02562 * 22 21 17 24 24 C 1.53781 * 113.61630 * 238.19862 * 8 7 6 25 25 C 1.38354 * 120.14986 * 359.43336 * 7 6 5 26 26 C 1.38388 * 120.30208 * 0.27165 * 25 7 6 27 27 C 1.37926 * 120.15156 * 0.02562 * 26 25 7 28 28 H 1.09001 * 109.47450 * 300.00777 * 1 2 3 29 29 H 1.09001 * 109.47361 * 60.00307 * 1 2 3 30 30 H 1.09002 * 109.47311 * 180.02562 * 1 2 3 31 31 H 1.07999 * 120.07564 * 359.97266 * 6 5 3 32 32 H 1.08992 * 113.61675 * 254.61723 * 10 8 7 33 33 H 1.09000 * 113.60973 * 25.52011 * 10 8 7 34 34 H 0.97002 * 119.99803 * 287.47074 * 13 11 10 35 35 H 1.07997 * 119.55350 * 180.29178 * 16 15 14 36 36 H 1.08996 * 109.47191 * 239.97764 * 18 17 16 37 37 H 0.96702 * 114.00175 * 299.99236 * 19 18 17 38 38 H 1.48497 * 110.00155 * 180.02562 * 20 18 17 39 39 H 1.48506 * 109.99767 * 301.32007 * 20 18 17 40 40 H 1.07996 * 120.76172 * 180.02562 * 21 17 16 41 41 H 1.08999 * 113.61567 * 334.48200 * 24 8 7 42 42 H 1.08998 * 113.61196 * 105.38554 * 24 8 7 43 43 H 1.07997 * 119.84623 * 180.25439 * 25 7 6 44 44 H 1.07994 * 119.92828 * 179.97438 * 26 25 7 45 45 H 1.07994 * 120.07898 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0635 1.2003 0.0000 4 8 1.4020 2.2190 -0.0005 5 6 3.5388 1.2776 -0.0006 6 6 4.1759 2.5199 0.0056 7 6 5.5540 2.5848 -0.0006 8 6 6.2434 3.9248 -0.0007 9 1 5.5566 4.7542 0.1683 10 6 7.4974 3.9725 0.8882 11 6 8.1542 4.8126 -0.2235 12 1 9.1993 4.5595 -0.4026 13 7 7.9345 6.2539 -0.0797 14 6 8.9808 7.0810 0.3171 15 7 10.1707 6.5589 0.5683 16 6 11.1910 7.3086 0.9416 17 6 11.0494 8.6725 1.0955 18 6 12.2216 9.5153 1.5277 19 8 12.5047 10.4894 0.5212 20 14 13.7125 8.4257 1.7743 21 6 9.8159 9.2611 0.8476 22 6 8.7652 8.4509 0.4525 23 9 7.5484 8.9812 0.2004 24 6 7.1800 4.1356 -1.2021 25 6 6.3044 1.4225 -0.0011 26 6 5.6794 0.1878 -0.0010 27 6 4.3024 0.1084 -0.0010 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 3.5912 3.4279 0.0103 32 1 7.3512 4.5175 1.8207 33 1 7.9661 2.9993 1.0346 34 1 7.0597 6.6316 -0.2610 35 1 12.1487 6.8476 1.1334 36 1 11.9812 10.0193 2.4638 37 1 12.7275 10.1114 -0.3405 38 1 14.8752 9.2448 2.2013 39 1 13.4200 7.3884 2.7959 40 1 9.6796 10.3265 0.9605 41 1 7.5621 3.2070 -1.6261 42 1 6.7777 4.8123 -1.9559 43 1 7.3829 1.4791 -0.0018 44 1 6.2711 -0.7156 -0.0017 45 1 3.8159 -0.8558 -0.0005 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_15508396_17656566.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 04:34:00 Heat of formation + Delta-G solvation = -57.711215 kcal Electronic energy + Delta-G solvation = -30339.138619 eV Core-core repulsion = 25817.977001 eV Total energy + Delta-G solvation = -4521.161617 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 359.137 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -49.87651 -41.81018 -41.45313 -40.84615 -39.21054 -37.94565 -37.37513 -35.54826 -33.24188 -32.55547 -32.30497 -30.95737 -28.72826 -26.93701 -26.79756 -26.11311 -25.24403 -24.58843 -23.01266 -22.91125 -21.87630 -20.29116 -19.53725 -18.84117 -18.38954 -18.20152 -18.10831 -17.53115 -17.31552 -17.10981 -16.96844 -16.63369 -16.32560 -16.07992 -15.91112 -15.77558 -15.38382 -15.17534 -14.81507 -14.62939 -14.55785 -14.43688 -14.36290 -14.04062 -14.00241 -13.66482 -13.48455 -13.25538 -13.15273 -12.91694 -12.72690 -12.61026 -12.10085 -12.04464 -11.91519 -11.77895 -11.61614 -11.34820 -11.17131 -10.71194 -10.66413 -10.47322 -10.10944 -9.81444 -8.79589 -5.10979 -0.35736 -0.08786 0.10027 0.24828 1.20684 1.52403 1.55712 1.67734 1.87966 1.91598 2.52957 2.66190 3.02294 3.19234 3.36541 3.39067 3.53742 3.56552 3.59594 3.64538 3.76820 3.82045 3.85938 3.95721 4.01484 4.05864 4.15980 4.20801 4.25206 4.34809 4.39250 4.43816 4.55679 4.56752 4.60148 4.66766 4.71197 4.75404 4.85894 4.89534 4.93619 4.96158 5.04620 5.21513 5.23572 5.36850 5.40580 5.48802 5.75332 5.94413 6.14046 6.50516 6.73690 6.92434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.355 6.355 3 C 0.508 3.492 4 O -0.504 6.504 5 C -0.125 4.125 6 C -0.051 4.051 7 C -0.082 4.082 8 C -0.075 4.075 9 H 0.099 0.901 10 C -0.145 4.145 11 C 0.134 3.866 12 H 0.111 0.889 13 N -0.700 5.700 14 C 0.392 3.608 15 N -0.510 5.510 16 C 0.147 3.853 17 C -0.209 4.209 18 C -0.055 4.055 19 O -0.540 6.540 20 Si 0.686 3.314 21 C -0.037 4.037 22 C -0.020 4.020 23 F -0.133 7.133 24 C -0.138 4.138 25 C -0.079 4.079 26 C -0.129 4.129 27 C -0.065 4.065 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.105 0.895 31 H 0.136 0.864 32 H 0.074 0.926 33 H 0.096 0.904 34 H 0.413 0.587 35 H 0.163 0.837 36 H 0.116 0.884 37 H 0.380 0.620 38 H -0.251 1.251 39 H -0.254 1.254 40 H 0.150 0.850 41 H 0.100 0.900 42 H 0.077 0.923 43 H 0.132 0.868 44 H 0.134 0.866 45 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.068 -4.081 -1.929 5.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.272 6.272 3 C 0.352 3.648 4 O -0.393 6.393 5 C -0.126 4.126 6 C -0.069 4.069 7 C -0.082 4.082 8 C -0.093 4.093 9 H 0.117 0.883 10 C -0.184 4.184 11 C 0.028 3.972 12 H 0.129 0.871 13 N -0.332 5.332 14 C 0.154 3.846 15 N -0.226 5.226 16 C -0.010 4.010 17 C -0.215 4.215 18 C -0.167 4.167 19 O -0.346 6.346 20 Si 0.588 3.412 21 C -0.064 4.064 22 C -0.046 4.046 23 F -0.112 7.112 24 C -0.176 4.176 25 C -0.097 4.097 26 C -0.146 4.146 27 C -0.083 4.083 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.123 0.877 31 H 0.154 0.846 32 H 0.093 0.907 33 H 0.114 0.886 34 H 0.250 0.750 35 H 0.180 0.820 36 H 0.133 0.867 37 H 0.227 0.773 38 H -0.176 1.176 39 H -0.179 1.179 40 H 0.167 0.833 41 H 0.119 0.881 42 H 0.096 0.904 43 H 0.150 0.850 44 H 0.152 0.848 45 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 3.407 -4.751 -0.992 5.929 hybrid contribution -1.688 1.436 0.290 2.236 sum 1.718 -3.315 -0.702 3.799 Atomic orbital electron populations 1.23338 0.75453 1.04101 1.02856 1.86532 1.23962 1.32467 1.84202 1.21244 0.89179 0.81579 0.72755 1.90853 1.66814 1.36043 1.45605 1.19090 0.88985 0.95054 1.09468 1.21170 0.94023 0.96793 0.94908 1.19629 0.92649 0.95113 1.00791 1.21624 0.95723 0.94261 0.97720 0.88316 1.23665 0.95398 1.01106 0.98227 1.21860 1.00713 0.78839 0.95793 0.87090 1.44237 1.10421 1.05855 1.72689 1.18384 0.88526 0.85990 0.91656 1.67284 0.98218 1.38563 1.18584 1.22347 0.96439 0.89610 0.92598 1.20943 0.96609 0.95337 1.08561 1.24866 1.01439 0.96286 0.94091 1.86513 1.91409 1.33834 1.22812 0.94843 0.77673 0.79810 0.88884 1.21281 0.90403 1.00919 0.93769 1.18002 0.82959 0.91015 1.12611 1.91501 1.40774 1.86411 1.92531 1.23477 0.96112 1.01650 0.96374 1.21334 1.00509 0.91780 0.96098 1.21192 0.94322 0.98178 1.00950 1.21504 0.94045 0.97969 0.94821 0.91640 0.91623 0.87666 0.84587 0.90704 0.88563 0.74977 0.82012 0.86707 0.77279 1.17602 1.17860 0.83262 0.88134 0.90391 0.85031 0.84805 0.84364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 -0.01 10.56 101.05 1.07 1.06 16 2 O -0.36 -0.76 9.82 -40.52 -0.40 -1.15 16 3 C 0.51 1.79 7.90 34.61 0.27 2.06 16 4 O -0.50 -3.06 16.14 -19.24 -0.31 -3.37 16 5 C -0.12 -0.23 5.87 -104.98 -0.62 -0.85 16 6 C -0.05 -0.06 9.25 -39.17 -0.36 -0.42 16 7 C -0.08 0.05 5.28 -104.68 -0.55 -0.51 16 8 C -0.07 0.14 3.85 -90.96 -0.35 -0.21 16 9 H 0.10 -0.17 8.08 -51.93 -0.42 -0.59 16 10 C -0.15 0.26 7.28 -25.77 -0.19 0.07 16 11 C 0.13 -0.22 4.35 -66.97 -0.29 -0.51 16 12 H 0.11 -0.12 7.41 -51.93 -0.38 -0.50 16 13 N -0.70 0.36 5.42 -52.92 -0.29 0.07 16 14 C 0.39 0.43 7.49 -154.86 -1.16 -0.73 16 15 N -0.51 -0.51 9.13 -12.37 -0.11 -0.62 16 16 C 0.15 -0.08 9.84 -17.57 -0.17 -0.25 16 17 C -0.21 0.12 5.40 -104.47 -0.56 -0.44 16 18 C -0.06 0.07 2.84 36.01 0.10 0.17 16 19 O -0.54 0.40 12.78 -35.23 -0.45 -0.05 16 20 Si 0.69 -1.54 29.82 -169.99 -5.07 -6.61 16 21 C -0.04 -0.02 9.75 -39.26 -0.38 -0.40 16 22 C -0.02 -0.03 7.35 -39.10 -0.29 -0.31 16 23 F -0.13 -0.28 16.65 2.25 0.04 -0.24 16 24 C -0.14 0.35 7.29 -25.92 -0.19 0.16 16 25 C -0.08 0.12 8.53 -39.48 -0.34 -0.22 16 26 C -0.13 0.17 10.03 -39.64 -0.40 -0.23 16 27 C -0.07 0.00 9.62 -39.17 -0.38 -0.38 16 28 H 0.06 -0.01 8.14 -51.93 -0.42 -0.43 16 29 H 0.07 -0.01 8.14 -51.93 -0.42 -0.43 16 30 H 0.10 -0.30 8.14 -51.93 -0.42 -0.73 16 31 H 0.14 0.18 7.64 -52.49 -0.40 -0.22 16 32 H 0.07 -0.03 8.14 -51.93 -0.42 -0.46 16 33 H 0.10 -0.26 6.39 -51.93 -0.33 -0.59 16 34 H 0.41 -0.53 8.18 -40.82 -0.33 -0.86 16 35 H 0.16 -0.46 4.88 -52.49 -0.26 -0.71 16 36 H 0.12 -0.11 7.96 -51.93 -0.41 -0.52 16 37 H 0.38 -1.73 8.70 45.56 0.40 -1.33 16 38 H -0.25 -0.29 7.11 56.52 0.40 0.11 16 39 H -0.25 0.02 7.11 56.52 0.40 0.42 16 40 H 0.15 -0.04 8.06 -52.49 -0.42 -0.46 16 41 H 0.10 -0.32 7.63 -51.93 -0.40 -0.71 16 42 H 0.08 -0.18 8.14 -51.93 -0.42 -0.60 16 43 H 0.13 -0.46 6.70 -52.49 -0.35 -0.81 16 44 H 0.13 -0.45 8.06 -52.49 -0.42 -0.88 16 45 H 0.14 -0.16 7.61 -52.49 -0.40 -0.56 16 LS Contribution 384.43 15.07 5.79 5.79 Total: 0.00 -7.97 384.43 -11.03 -19.00 By element: Atomic # 1 Polarization: -5.43 SS G_CDS: -5.45 Total: -10.88 kcal Atomic # 6 Polarization: 2.84 SS G_CDS: -4.79 Total: -1.94 kcal Atomic # 7 Polarization: -0.15 SS G_CDS: -0.40 Total: -0.55 kcal Atomic # 8 Polarization: -3.42 SS G_CDS: -1.16 Total: -4.57 kcal Atomic # 9 Polarization: -0.28 SS G_CDS: 0.04 Total: -0.24 kcal Atomic # 14 Polarization: -1.54 SS G_CDS: -5.07 Total: -6.61 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -7.97 -11.03 -19.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_15508396_17656566.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.713 kcal (2) G-P(sol) polarization free energy of solvation -7.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds