Wall clock time and date at job start Mon Mar 8 2021 04:33:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34711 * 116.99872 * 2 1 4 4 O 1.21467 * 120.00447 * 359.97438 * 3 2 1 5 5 C 1.47734 * 119.99762 * 180.02562 * 3 2 1 6 6 C 1.39613 * 120.14761 * 180.29231 * 5 3 2 7 7 C 1.37959 * 119.84543 * 180.26898 * 6 5 3 8 8 C 1.50697 * 119.92593 * 179.70394 * 7 6 5 9 9 H 1.09002 * 112.84782 * 9.39504 * 8 7 6 10 10 C 1.53786 * 113.61519 * 140.58914 * 8 7 6 11 11 C 1.54049 * 86.98426 * 140.01979 * 10 8 7 12 12 H 1.09005 * 113.62125 * 220.02158 * 11 10 8 13 13 N 1.46504 * 113.68747 * 89.12986 * 11 10 8 14 14 C 1.39142 * 120.00236 * 107.46867 * 13 11 10 15 15 N 1.32342 * 119.71598 * 359.72868 * 14 13 11 16 16 C 1.32005 * 121.64594 * 179.71495 * 15 14 13 17 17 C 1.37987 * 120.89802 * 0.56136 * 16 15 14 18 18 C 1.50701 * 120.32549 * 179.75003 * 17 16 15 19 19 O 1.42903 * 109.46975 * 119.97691 * 18 17 16 20 20 Si 1.86301 * 109.47184 * 359.97438 * 18 17 16 21 21 C 1.38898 * 119.34967 * 359.72506 * 17 16 15 22 22 C 1.38449 * 118.48260 * 0.02562 * 21 17 16 23 23 F 1.35108 * 120.46953 * 180.02562 * 22 21 17 24 24 C 1.53781 * 113.61630 * 238.19862 * 8 7 6 25 25 C 1.38354 * 120.14986 * 359.43336 * 7 6 5 26 26 C 1.38388 * 120.30208 * 0.27165 * 25 7 6 27 27 C 1.37926 * 120.15156 * 0.02562 * 26 25 7 28 28 H 1.09001 * 109.47450 * 300.00777 * 1 2 3 29 29 H 1.09001 * 109.47361 * 60.00307 * 1 2 3 30 30 H 1.09002 * 109.47311 * 180.02562 * 1 2 3 31 31 H 1.07999 * 120.07564 * 359.97266 * 6 5 3 32 32 H 1.08992 * 113.61675 * 254.61723 * 10 8 7 33 33 H 1.09000 * 113.60973 * 25.52011 * 10 8 7 34 34 H 0.97002 * 119.99803 * 287.47074 * 13 11 10 35 35 H 1.07997 * 119.55350 * 180.29178 * 16 15 14 36 36 H 1.08996 * 109.47191 * 239.97764 * 18 17 16 37 37 H 0.96702 * 114.00175 * 299.99236 * 19 18 17 38 38 H 1.48497 * 110.00155 * 180.02562 * 20 18 17 39 39 H 1.48506 * 109.99767 * 301.32007 * 20 18 17 40 40 H 1.07996 * 120.76172 * 180.02562 * 21 17 16 41 41 H 1.08999 * 113.61567 * 334.48200 * 24 8 7 42 42 H 1.08998 * 113.61196 * 105.38554 * 24 8 7 43 43 H 1.07997 * 119.84623 * 180.25439 * 25 7 6 44 44 H 1.07994 * 119.92828 * 179.97438 * 26 25 7 45 45 H 1.07994 * 120.07898 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0635 1.2003 0.0000 4 8 1.4020 2.2190 -0.0005 5 6 3.5388 1.2776 -0.0006 6 6 4.1759 2.5199 0.0056 7 6 5.5540 2.5848 -0.0006 8 6 6.2434 3.9248 -0.0007 9 1 5.5566 4.7542 0.1683 10 6 7.4974 3.9725 0.8882 11 6 8.1542 4.8126 -0.2235 12 1 9.1993 4.5595 -0.4026 13 7 7.9345 6.2539 -0.0797 14 6 8.9808 7.0810 0.3171 15 7 10.1707 6.5589 0.5683 16 6 11.1910 7.3086 0.9416 17 6 11.0494 8.6725 1.0955 18 6 12.2216 9.5153 1.5277 19 8 12.5047 10.4894 0.5212 20 14 13.7125 8.4257 1.7743 21 6 9.8159 9.2611 0.8476 22 6 8.7652 8.4509 0.4525 23 9 7.5484 8.9812 0.2004 24 6 7.1800 4.1356 -1.2021 25 6 6.3044 1.4225 -0.0011 26 6 5.6794 0.1878 -0.0010 27 6 4.3024 0.1084 -0.0010 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 3.5912 3.4279 0.0103 32 1 7.3512 4.5175 1.8207 33 1 7.9661 2.9993 1.0346 34 1 7.0597 6.6316 -0.2610 35 1 12.1487 6.8476 1.1334 36 1 11.9812 10.0193 2.4638 37 1 12.7275 10.1114 -0.3405 38 1 14.8752 9.2448 2.2013 39 1 13.4200 7.3884 2.7959 40 1 9.6796 10.3265 0.9605 41 1 7.5621 3.2070 -1.6261 42 1 6.7777 4.8123 -1.9559 43 1 7.3829 1.4791 -0.0018 44 1 6.2711 -0.7156 -0.0017 45 1 3.8159 -0.8558 -0.0005 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_15508396_17656566.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 04:33:58 Heat of formation + Delta-G solvation = -53.133727 kcal Electronic energy + Delta-G solvation = -30338.940124 eV Core-core repulsion = 25817.977001 eV Total energy + Delta-G solvation = -4520.963122 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 359.137 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -49.96894 -41.84115 -41.50929 -40.83809 -39.16161 -37.87057 -37.59616 -35.49562 -33.23485 -32.54239 -32.26110 -30.92303 -28.74819 -26.85619 -26.65537 -26.03659 -25.26478 -24.59537 -22.99199 -22.86302 -21.93070 -20.25295 -19.49615 -18.86678 -18.40724 -18.28550 -18.13461 -17.50107 -17.50009 -17.08445 -17.01433 -16.55591 -16.25084 -16.02872 -15.86363 -15.71907 -15.38857 -15.11850 -14.77375 -14.67174 -14.62538 -14.39407 -14.34348 -14.05025 -14.01891 -13.53545 -13.42190 -13.19696 -13.16355 -12.82565 -12.69165 -12.54160 -12.11435 -11.97178 -11.92883 -11.81447 -11.77567 -11.26206 -11.10101 -10.71140 -10.66239 -10.39843 -10.08579 -9.76011 -8.76687 -4.95467 -0.39918 -0.08794 0.09608 0.29786 1.33498 1.39064 1.59041 1.67831 1.94298 2.02110 2.53531 2.67898 3.01836 3.25669 3.47094 3.50447 3.60095 3.63039 3.67303 3.73121 3.86214 3.87658 3.97235 3.99740 4.12966 4.14482 4.21674 4.24616 4.27456 4.40739 4.44694 4.48516 4.62673 4.68615 4.71439 4.77082 4.80985 4.87345 4.96495 4.98003 5.01370 5.05421 5.13315 5.18947 5.25593 5.39226 5.44393 5.55137 5.83761 6.01778 6.17631 6.53852 6.80104 6.94189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.356 6.356 3 C 0.505 3.495 4 O -0.542 6.542 5 C -0.148 4.148 6 C -0.067 4.067 7 C -0.082 4.082 8 C -0.074 4.074 9 H 0.091 0.909 10 C -0.139 4.139 11 C 0.134 3.866 12 H 0.111 0.889 13 N -0.699 5.699 14 C 0.385 3.615 15 N -0.521 5.521 16 C 0.149 3.851 17 C -0.206 4.206 18 C -0.061 4.061 19 O -0.557 6.557 20 Si 0.778 3.222 21 C -0.041 4.041 22 C -0.040 4.040 23 F -0.143 7.143 24 C -0.128 4.128 25 C -0.073 4.073 26 C -0.126 4.126 27 C -0.068 4.068 28 H 0.061 0.939 29 H 0.062 0.938 30 H 0.135 0.865 31 H 0.123 0.877 32 H 0.059 0.941 33 H 0.111 0.889 34 H 0.414 0.586 35 H 0.186 0.814 36 H 0.110 0.890 37 H 0.396 0.604 38 H -0.298 1.298 39 H -0.278 1.278 40 H 0.152 0.848 41 H 0.115 0.885 42 H 0.075 0.925 43 H 0.159 0.841 44 H 0.161 0.839 45 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.751 -5.643 -2.293 7.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.273 6.273 3 C 0.352 3.648 4 O -0.434 6.434 5 C -0.149 4.149 6 C -0.086 4.086 7 C -0.082 4.082 8 C -0.093 4.093 9 H 0.110 0.890 10 C -0.178 4.178 11 C 0.028 3.972 12 H 0.129 0.871 13 N -0.331 5.331 14 C 0.147 3.853 15 N -0.238 5.238 16 C -0.008 4.008 17 C -0.211 4.211 18 C -0.171 4.171 19 O -0.365 6.365 20 Si 0.683 3.317 21 C -0.068 4.068 22 C -0.066 4.066 23 F -0.122 7.122 24 C -0.166 4.166 25 C -0.091 4.091 26 C -0.143 4.143 27 C -0.086 4.086 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.153 0.847 31 H 0.141 0.859 32 H 0.078 0.922 33 H 0.129 0.871 34 H 0.252 0.748 35 H 0.202 0.798 36 H 0.127 0.873 37 H 0.246 0.754 38 H -0.226 1.226 39 H -0.204 1.204 40 H 0.170 0.830 41 H 0.133 0.867 42 H 0.094 0.906 43 H 0.176 0.824 44 H 0.179 0.821 45 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 5.058 -6.334 -1.386 8.224 hybrid contribution -2.175 1.931 0.432 2.940 sum 2.883 -4.404 -0.954 5.349 Atomic orbital electron populations 1.23589 0.74313 1.05985 1.02548 1.86529 1.25188 1.31761 1.83775 1.21672 0.89982 0.81403 0.71724 1.90821 1.67716 1.37150 1.47706 1.19173 0.88188 0.96096 1.11412 1.21199 0.94968 0.96285 0.96118 1.19757 0.91913 0.96144 1.00434 1.21599 0.95671 0.93578 0.98406 0.89034 1.23656 0.95207 1.01558 0.97352 1.21904 1.00829 0.78204 0.96236 0.87139 1.44337 1.10217 1.06312 1.72233 1.18519 0.88970 0.86086 0.91733 1.67344 0.98388 1.38871 1.19148 1.22727 0.96950 0.89620 0.91548 1.21000 0.96388 0.95484 1.08270 1.25027 1.01826 0.96388 0.93887 1.86478 1.91454 1.34601 1.23932 0.93792 0.73845 0.76980 0.87076 1.21417 0.90679 1.01105 0.93549 1.18170 0.82946 0.91512 1.13999 1.91468 1.41365 1.86568 1.92771 1.23451 0.95262 1.02025 0.95823 1.21670 1.01794 0.91169 0.94476 1.21536 0.93807 0.99351 0.99626 1.21684 0.94808 0.97608 0.94485 0.92021 0.91947 0.84654 0.85947 0.92206 0.87066 0.74835 0.79801 0.87294 0.75394 1.22618 1.20435 0.83048 0.86723 0.90617 0.82370 0.82103 0.83437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.01 10.56 113.37 1.20 1.20 16 2 O -0.36 -1.87 9.82 -56.20 -0.55 -2.43 16 3 C 0.51 4.54 7.90 70.33 0.56 5.09 16 4 O -0.54 -8.07 16.14 19.94 0.32 -7.75 16 5 C -0.15 -0.73 5.87 -20.10 -0.12 -0.85 16 6 C -0.07 -0.26 9.25 22.54 0.21 -0.06 16 7 C -0.08 0.10 5.28 -19.90 -0.11 -0.01 16 8 C -0.07 0.26 3.85 -11.01 -0.04 0.22 16 9 H 0.09 -0.20 8.08 -2.39 -0.02 -0.21 16 10 C -0.14 0.58 7.28 31.21 0.23 0.81 16 11 C 0.13 -0.50 4.35 45.61 0.20 -0.30 16 12 H 0.11 -0.35 7.41 -2.38 -0.02 -0.37 16 13 N -0.70 0.39 5.42 -321.35 -1.74 -1.35 16 14 C 0.39 0.99 7.49 133.08 1.00 1.99 16 15 N -0.52 -0.84 9.13 -193.04 -1.76 -2.60 16 16 C 0.15 -0.27 9.84 84.61 0.83 0.56 16 17 C -0.21 0.29 5.40 -19.77 -0.11 0.18 16 18 C -0.06 0.18 2.84 71.24 0.20 0.38 16 19 O -0.56 1.03 12.78 -148.98 -1.90 -0.87 16 20 Si 0.78 -3.98 29.82 68.60 2.05 -1.93 16 21 C -0.04 -0.06 9.75 22.48 0.22 0.16 16 22 C -0.04 -0.15 7.35 22.58 0.17 0.02 16 23 F -0.14 -0.81 16.65 44.97 0.75 -0.06 16 24 C -0.13 0.74 7.29 31.12 0.23 0.96 16 25 C -0.07 0.35 8.53 22.33 0.19 0.54 16 26 C -0.13 0.56 10.03 22.23 0.22 0.78 16 27 C -0.07 0.02 9.62 22.54 0.22 0.23 16 28 H 0.06 0.06 8.14 -2.39 -0.02 0.04 16 29 H 0.06 0.06 8.14 -2.39 -0.02 0.04 16 30 H 0.14 -0.85 8.14 -2.39 -0.02 -0.87 16 31 H 0.12 0.70 7.64 -2.91 -0.02 0.68 16 32 H 0.06 -0.04 8.14 -2.39 -0.02 -0.06 16 33 H 0.11 -0.81 6.39 -2.39 -0.02 -0.82 16 34 H 0.41 -0.63 8.18 -92.71 -0.76 -1.38 16 35 H 0.19 -1.33 4.88 -2.91 -0.01 -1.35 16 36 H 0.11 -0.20 7.96 -2.39 -0.02 -0.22 16 37 H 0.40 -3.91 8.70 -74.06 -0.64 -4.55 16 38 H -0.30 -0.86 7.11 99.48 0.71 -0.15 16 39 H -0.28 0.29 7.11 99.48 0.71 0.99 16 40 H 0.15 0.05 8.06 -2.91 -0.02 0.03 16 41 H 0.11 -0.95 7.63 -2.39 -0.02 -0.97 16 42 H 0.08 -0.36 8.14 -2.39 -0.02 -0.38 16 43 H 0.16 -1.63 6.70 -2.91 -0.02 -1.65 16 44 H 0.16 -1.59 8.06 -2.91 -0.02 -1.62 16 45 H 0.15 -0.41 7.61 -2.91 -0.02 -0.43 16 Total: 0.00 -20.46 384.43 2.14 -18.32 By element: Atomic # 1 Polarization: -12.95 SS G_CDS: -0.30 Total: -13.25 kcal Atomic # 6 Polarization: 6.63 SS G_CDS: 5.29 Total: 11.92 kcal Atomic # 7 Polarization: -0.45 SS G_CDS: -3.50 Total: -3.95 kcal Atomic # 8 Polarization: -8.91 SS G_CDS: -2.13 Total: -11.05 kcal Atomic # 9 Polarization: -0.81 SS G_CDS: 0.75 Total: -0.06 kcal Atomic # 14 Polarization: -3.98 SS G_CDS: 2.05 Total: -1.93 kcal Total: -20.46 2.14 -18.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_15508396_17656566.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.814 kcal (2) G-P(sol) polarization free energy of solvation -20.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds