Wall clock time and date at job start Mon Mar 8 2021 04:39:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45206 * 109.46777 * 2 1 4 4 C 1.34224 * 117.00077 * 179.97438 * 3 2 1 5 5 O 1.20833 * 120.00103 * 359.97438 * 4 3 2 6 6 C 1.50696 * 120.00302 * 180.02562 * 4 3 2 7 7 H 1.09012 * 112.84777 * 311.19212 * 6 4 3 8 8 C 1.53776 * 113.61915 * 82.49756 * 6 4 3 9 9 C 1.53777 * 87.08084 * 139.98406 * 8 6 4 10 10 F 1.39900 * 113.61609 * 89.12049 * 9 8 6 11 11 C 1.53004 * 113.69053 * 220.01171 * 9 8 6 12 12 N 1.46511 * 109.47051 * 277.53522 * 11 9 8 13 13 C 1.39004 * 119.99787 * 179.97438 * 12 11 9 14 14 N 1.32395 * 119.70007 * 180.02562 * 13 12 11 15 15 C 1.31975 * 121.62361 * 180.02562 * 14 13 12 16 16 C 1.38027 * 120.85269 * 0.02562 * 15 14 13 17 17 C 1.50695 * 120.33456 * 180.02562 * 16 15 14 18 18 O 1.42905 * 109.46507 * 244.99642 * 17 16 15 19 19 Si 1.86300 * 109.47202 * 4.99183 * 17 16 15 20 20 C 1.38893 * 119.32844 * 359.97438 * 16 15 14 21 21 C 1.38297 * 118.50481 * 359.73357 * 20 16 15 22 22 C 1.53776 * 87.08393 * 334.56836 * 9 8 6 23 23 H 1.09002 * 109.46716 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47486 * 299.99948 * 1 2 3 25 25 H 1.09001 * 109.47362 * 60.00671 * 1 2 3 26 26 H 1.09000 * 109.47486 * 240.00051 * 2 1 3 27 27 H 1.09001 * 109.47362 * 119.99329 * 2 1 3 28 28 H 1.08992 * 113.61615 * 254.53384 * 8 6 4 29 29 H 1.09005 * 113.61341 * 25.43512 * 8 6 4 30 30 H 1.08995 * 109.47369 * 37.53223 * 11 9 8 31 31 H 1.08999 * 109.47610 * 157.53995 * 11 9 8 32 32 H 0.96997 * 119.99814 * 359.97438 * 12 11 9 33 33 H 1.07988 * 119.57861 * 180.02562 * 15 14 13 34 34 H 1.08995 * 109.47464 * 124.99949 * 17 16 15 35 35 H 0.96698 * 113.99903 * 60.00320 * 18 17 16 36 36 H 1.48496 * 109.99902 * 180.02562 * 19 17 16 37 37 H 1.48498 * 110.00470 * 301.32458 * 19 17 16 38 38 H 1.07999 * 120.74388 * 180.02562 * 20 16 15 39 39 H 1.08000 * 120.44732 * 180.28905 * 21 20 16 40 40 H 1.09001 * 113.61582 * 270.88399 * 22 9 8 41 41 H 1.09006 * 113.61469 * 139.98038 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3446 1.5450 0.0005 5 8 4.0807 0.5868 0.0015 6 6 3.9205 2.9376 0.0012 7 1 3.4712 3.5818 -0.7548 8 6 3.9855 3.5768 1.3982 9 6 5.3558 4.1425 0.9895 10 9 5.2828 5.3934 0.3675 11 6 6.3989 4.0951 2.1078 12 7 6.2200 5.2497 2.9918 13 6 7.0572 5.4221 4.0879 14 7 6.8899 6.4673 4.8831 15 6 7.6630 6.6684 5.9337 16 6 8.6813 5.7890 6.2418 17 6 9.5567 6.0295 7.4446 18 8 10.8964 6.2815 7.0157 19 14 8.9204 7.5025 8.3912 20 6 8.8902 4.6795 5.4327 21 6 8.0602 4.4921 4.3425 22 6 5.4580 2.9684 0.0017 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5137 -0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5137 0.8900 28 1 3.2284 4.3432 1.5634 29 1 4.0374 2.8500 2.2090 30 1 6.2756 3.1762 2.6810 31 1 7.3984 4.1213 1.6739 32 1 5.5173 5.8937 2.8121 33 1 7.4969 7.5320 6.5603 34 1 9.5406 5.1496 8.0876 35 1 10.9863 7.0522 6.4387 36 1 9.7756 7.7506 9.5796 37 1 8.9075 8.7020 7.5160 38 1 9.6800 3.9765 5.6528 39 1 8.1916 3.6376 3.6951 40 1 5.9125 2.0752 0.4306 41 1 5.8897 3.2437 -0.9606 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_15509218_13915762.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 04:39:25 Heat of formation + Delta-G solvation = -90.443552 kcal Electronic energy + Delta-G solvation = -25144.702258 eV Core-core repulsion = 21135.025822 eV Total energy + Delta-G solvation = -4009.676436 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 311.137 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -48.92916 -41.84457 -41.38442 -39.36887 -38.18496 -37.57143 -36.43464 -33.50882 -32.72017 -31.89139 -29.53396 -27.18169 -26.78556 -25.55315 -24.79532 -23.76719 -22.56210 -21.87592 -20.74269 -19.21960 -18.68364 -18.58888 -17.93908 -17.68627 -17.43533 -17.08016 -16.47084 -16.37876 -16.23947 -16.07797 -15.59174 -15.44986 -15.25992 -15.00198 -14.58012 -14.43010 -14.33756 -14.05166 -13.98981 -13.66504 -13.56498 -13.33107 -12.99409 -12.91377 -12.59924 -12.50937 -12.44759 -12.05690 -11.85760 -11.59083 -11.56824 -11.39225 -11.17999 -10.77596 -10.54328 -10.40963 -8.75658 -4.90633 0.21861 0.39536 1.00837 1.34233 1.56696 1.60734 1.96064 1.98451 2.81309 2.87674 2.99697 3.17435 3.28073 3.40589 3.46486 3.61317 3.78198 3.83289 3.95959 4.00676 4.02232 4.09173 4.16654 4.27347 4.30714 4.35348 4.48023 4.49806 4.56262 4.60548 4.74067 4.77156 4.80904 4.81823 4.87958 4.99519 5.11348 5.14483 5.28646 5.40304 5.48221 5.94197 6.44687 6.50704 6.60707 7.11486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.054 3.946 3 O -0.361 6.361 4 C 0.475 3.525 5 O -0.533 6.533 6 C -0.110 4.110 7 H 0.143 0.857 8 C -0.128 4.128 9 C 0.090 3.910 10 F -0.192 7.192 11 C 0.121 3.879 12 N -0.721 5.721 13 C 0.395 3.605 14 N -0.565 5.565 15 C 0.145 3.855 16 C -0.232 4.232 17 C -0.062 4.062 18 O -0.549 6.549 19 Si 0.756 3.244 20 C -0.010 4.010 21 C -0.241 4.241 22 C -0.125 4.125 23 H 0.096 0.904 24 H 0.069 0.931 25 H 0.067 0.933 26 H 0.068 0.932 27 H 0.071 0.929 28 H 0.104 0.896 29 H 0.115 0.885 30 H 0.103 0.897 31 H 0.086 0.914 32 H 0.407 0.593 33 H 0.166 0.834 34 H 0.127 0.873 35 H 0.384 0.616 36 H -0.300 1.300 37 H -0.284 1.284 38 H 0.148 0.852 39 H 0.152 0.848 40 H 0.121 0.879 41 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.699 -2.616 -0.338 4.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.020 4.020 3 O -0.278 6.278 4 C 0.319 3.681 5 O -0.422 6.422 6 C -0.129 4.129 7 H 0.161 0.839 8 C -0.166 4.166 9 C 0.071 3.929 10 F -0.172 7.172 11 C -0.004 4.004 12 N -0.354 5.354 13 C 0.159 3.841 14 N -0.283 5.283 15 C -0.012 4.012 16 C -0.238 4.238 17 C -0.173 4.173 18 O -0.357 6.357 19 Si 0.662 3.338 20 C -0.036 4.036 21 C -0.265 4.265 22 C -0.163 4.163 23 H 0.114 0.886 24 H 0.088 0.912 25 H 0.086 0.914 26 H 0.087 0.913 27 H 0.089 0.911 28 H 0.123 0.877 29 H 0.133 0.867 30 H 0.121 0.879 31 H 0.104 0.896 32 H 0.243 0.757 33 H 0.182 0.818 34 H 0.145 0.855 35 H 0.234 0.766 36 H -0.229 1.229 37 H -0.211 1.211 38 H 0.166 0.834 39 H 0.170 0.830 40 H 0.140 0.860 41 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -3.874 -2.227 -0.031 4.469 hybrid contribution 1.207 -0.041 -0.963 1.544 sum -2.668 -2.268 -0.994 3.640 Atomic orbital electron populations 1.21834 0.90877 1.04263 1.03699 1.23268 0.96824 0.79222 1.02637 1.86529 1.24303 1.33617 1.83336 1.23784 0.80578 0.92589 0.71172 1.90677 1.61031 1.43948 1.46579 1.22611 0.97447 0.90456 1.02363 0.83906 1.23604 0.96591 1.01109 0.95298 1.21915 0.97316 0.80403 0.93274 1.92893 1.97193 1.43279 1.83854 1.21964 0.99137 0.89755 0.89496 1.44346 1.36043 1.28748 1.26243 1.18573 0.88733 0.89574 0.87177 1.67134 1.31182 1.22241 1.07702 1.22489 0.89604 0.97404 0.91738 1.20972 1.01719 0.99201 1.01874 1.24898 0.83439 1.11500 0.97419 1.86566 1.26602 1.52369 1.70179 0.94203 0.87837 0.74871 0.76865 1.21430 0.95854 0.95114 0.91206 1.21667 0.99227 1.02940 1.02709 1.23578 0.93333 0.98107 1.01273 0.88550 0.91243 0.91379 0.91344 0.91097 0.87697 0.86674 0.87872 0.89604 0.75693 0.81779 0.85539 0.76649 1.22853 1.21110 0.83429 0.83014 0.86042 0.87918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.68 10.29 71.98 0.74 1.42 16 2 C 0.05 -0.03 6.19 71.98 0.45 0.42 16 3 O -0.36 -0.66 10.22 -51.35 -0.52 -1.19 16 4 C 0.47 0.79 7.48 71.23 0.53 1.33 16 5 O -0.53 -3.77 15.65 21.94 0.34 -3.42 16 6 C -0.11 0.46 4.24 -11.02 -0.05 0.41 16 7 H 0.14 -0.87 8.14 -2.38 -0.02 -0.89 16 8 C -0.13 0.81 7.08 31.12 0.22 1.03 16 9 C 0.09 -0.48 1.67 -10.27 -0.02 -0.49 16 10 F -0.19 0.05 16.79 44.97 0.76 0.80 16 11 C 0.12 -0.70 4.59 86.38 0.40 -0.30 16 12 N -0.72 0.62 5.64 -345.05 -1.95 -1.33 16 13 C 0.40 1.14 7.65 133.06 1.02 2.15 16 14 N -0.56 -3.28 10.39 -193.27 -2.01 -5.29 16 15 C 0.14 0.37 9.84 84.62 0.83 1.20 16 16 C -0.23 -0.16 5.36 -19.76 -0.11 -0.26 16 17 C -0.06 0.05 2.82 71.23 0.20 0.25 16 18 O -0.55 -1.26 12.84 -148.98 -1.91 -3.17 16 19 Si 0.76 -1.14 29.91 68.60 2.05 0.91 16 20 C -0.01 0.00 9.84 22.44 0.22 0.22 16 21 C -0.24 0.02 9.33 22.50 0.21 0.23 16 22 C -0.12 0.69 6.86 31.12 0.21 0.90 16 23 H 0.10 -0.71 8.14 -2.39 -0.02 -0.73 16 24 H 0.07 -0.31 8.14 -2.39 -0.02 -0.33 16 25 H 0.07 -0.29 8.14 -2.39 -0.02 -0.30 16 26 H 0.07 -0.01 8.13 -2.39 -0.02 -0.03 16 27 H 0.07 -0.04 8.13 -2.39 -0.02 -0.06 16 28 H 0.10 -0.73 8.14 -2.39 -0.02 -0.75 16 29 H 0.11 -0.85 7.92 -2.38 -0.02 -0.87 16 30 H 0.10 -0.90 7.72 -2.39 -0.02 -0.92 16 31 H 0.09 -0.56 7.94 -2.39 -0.02 -0.58 16 32 H 0.41 -0.02 8.31 -92.71 -0.77 -0.79 16 33 H 0.17 -0.15 4.85 -2.92 -0.01 -0.16 16 34 H 0.13 -0.37 7.96 -2.39 -0.02 -0.39 16 35 H 0.38 -1.02 8.70 -74.06 -0.64 -1.67 16 36 H -0.30 -1.80 7.11 99.48 0.71 -1.09 16 37 H -0.28 -0.76 7.01 99.48 0.70 -0.06 16 38 H 0.15 -0.39 8.06 -2.91 -0.02 -0.42 16 39 H 0.15 -0.72 6.71 -2.91 -0.02 -0.74 16 40 H 0.12 -0.67 7.39 -2.39 -0.02 -0.69 16 41 H 0.10 -0.63 8.14 -2.38 -0.02 -0.65 16 Total: 0.00 -17.61 349.45 1.30 -16.31 By element: Atomic # 1 Polarization: -11.81 SS G_CDS: -0.32 Total: -12.13 kcal Atomic # 6 Polarization: 3.64 SS G_CDS: 4.86 Total: 8.50 kcal Atomic # 7 Polarization: -2.66 SS G_CDS: -3.95 Total: -6.62 kcal Atomic # 8 Polarization: -5.68 SS G_CDS: -2.09 Total: -7.78 kcal Atomic # 9 Polarization: 0.05 SS G_CDS: 0.76 Total: 0.80 kcal Atomic # 14 Polarization: -1.14 SS G_CDS: 2.05 Total: 0.91 kcal Total: -17.61 1.30 -16.31 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_15509218_13915762.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.138 kcal (2) G-P(sol) polarization free energy of solvation -17.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds