Wall clock time and date at job start Mon Mar 8 2021 04:39:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.45206 * 109.46650 * 2 1 4 4 C 1.34237 * 116.99652 * 180.02562 * 3 2 1 5 5 O 1.20829 * 119.99852 * 0.02562 * 4 3 2 6 6 C 1.50691 * 119.99835 * 180.02562 * 4 3 2 7 7 H 1.09010 * 112.85062 * 311.19301 * 6 4 3 8 8 C 1.53951 * 113.74671 * 82.40346 * 6 4 3 9 9 C 1.53771 * 87.02205 * 139.94285 * 8 6 4 10 10 F 1.39896 * 113.61707 * 89.23004 * 9 8 6 11 11 C 1.53003 * 113.61499 * 220.05102 * 9 8 6 12 12 N 1.46507 * 109.46868 * 279.13362 * 11 9 8 13 13 C 1.38615 * 119.99931 * 179.97438 * 12 11 9 14 14 N 1.29689 * 124.94850 * 359.75421 * 13 12 11 15 15 C 1.32120 * 116.86474 * 179.97438 * 14 13 12 16 16 C 1.33321 * 114.57889 * 359.97438 * 15 14 13 17 17 C 1.50706 * 125.95219 * 180.02562 * 16 15 14 18 18 O 1.42904 * 109.46750 * 299.99852 * 17 16 15 19 19 Si 1.86294 * 109.47430 * 179.97438 * 17 16 15 20 20 S 1.70959 * 124.94847 * 179.44708 * 13 12 11 21 21 C 1.53783 * 87.17659 * 334.63899 * 9 8 6 22 22 H 1.08996 * 109.47459 * 299.99882 * 1 2 3 23 23 H 1.09004 * 109.47720 * 59.99611 * 1 2 3 24 24 H 1.09004 * 109.47126 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47031 * 240.00286 * 2 1 3 26 26 H 1.08993 * 109.47316 * 120.00189 * 2 1 3 27 27 H 1.09004 * 113.61308 * 25.41571 * 8 6 4 28 28 H 1.09001 * 113.66521 * 254.47580 * 8 6 4 29 29 H 1.08996 * 109.47758 * 159.13801 * 11 9 8 30 30 H 1.09001 * 109.47075 * 39.13285 * 11 9 8 31 31 H 0.96996 * 119.99780 * 359.72449 * 12 11 9 32 32 H 1.08000 * 122.70581 * 179.97438 * 15 14 13 33 33 H 1.08994 * 109.47067 * 59.99269 * 17 16 15 34 34 H 0.96708 * 113.99789 * 300.00005 * 18 17 16 35 35 H 1.48499 * 110.00285 * 179.97438 * 19 17 16 36 36 H 1.48502 * 109.99895 * 301.31781 * 19 17 16 37 37 H 1.08994 * 113.61798 * 139.94033 * 21 9 8 38 38 H 1.09000 * 113.61287 * 270.84561 * 21 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3691 0.0000 4 6 3.3447 1.5450 -0.0005 5 8 4.0807 0.5867 -0.0015 6 6 3.9206 2.9375 0.0000 7 1 3.4706 3.5820 -0.7553 8 6 3.9860 3.5807 1.3972 9 6 5.3567 4.1435 0.9858 10 9 5.2850 5.3938 0.3625 11 6 6.3994 4.0962 2.1045 12 7 6.1983 5.2320 3.0079 13 6 7.0288 5.4007 4.1048 14 7 8.0073 4.6117 4.4240 15 6 8.6981 4.9248 5.5058 16 6 8.2841 6.0290 6.1278 17 6 8.8844 6.6179 7.3784 18 8 8.7993 5.6664 8.4413 19 14 7.9511 8.1601 7.8486 20 16 6.9171 6.6832 5.2297 21 6 5.4581 2.9682 -0.0008 22 1 -0.3634 0.5138 0.8899 23 1 -0.3635 0.5139 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8899 27 1 4.0375 2.8559 2.2096 28 1 3.2300 4.3487 1.5611 29 1 7.3987 4.1484 1.6724 30 1 6.2926 3.1655 2.6617 31 1 5.4862 5.8679 2.8363 32 1 9.5309 4.3340 5.8577 33 1 9.9298 6.8673 7.1970 34 1 7.8958 5.3980 8.6575 35 1 8.5330 8.7502 9.0809 36 1 8.0057 9.1450 6.7386 37 1 5.8889 3.2424 -0.9637 38 1 5.9129 2.0756 0.4288 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_15509218_15704118.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 04:39:28 Heat of formation + Delta-G solvation = -86.287605 kcal Electronic energy + Delta-G solvation = -23691.420411 eV Core-core repulsion = 19771.076437 eV Total energy + Delta-G solvation = -3920.343974 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 317.093 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.04162 -41.80775 -40.72128 -39.43369 -38.02099 -37.49984 -36.45529 -32.79956 -31.68002 -29.94975 -27.40087 -26.88493 -26.09274 -24.38932 -23.79229 -22.16098 -20.97504 -20.70619 -19.98943 -18.89532 -18.20239 -17.85613 -17.67697 -17.36820 -16.95787 -16.64224 -16.48975 -15.96533 -15.77036 -15.69362 -15.55048 -15.22015 -14.85221 -14.62424 -14.53225 -14.18225 -13.99133 -13.80486 -13.72720 -13.08093 -13.00721 -12.88686 -12.71506 -12.57775 -12.34678 -12.06830 -11.94425 -11.75739 -11.58530 -11.41148 -11.26276 -10.79940 -10.27740 -10.16193 -8.80119 -5.13517 -0.04698 -0.00492 0.67846 1.05322 1.25847 1.52493 1.58661 1.90738 1.98328 2.02290 2.69260 2.82685 3.02677 3.11290 3.23638 3.43705 3.67113 3.75955 3.89296 3.92922 3.93959 4.01360 4.13557 4.23486 4.27963 4.34803 4.44889 4.48101 4.53826 4.64678 4.66453 4.73570 4.74846 4.95769 4.96591 5.04913 5.38568 5.69127 5.93634 6.52178 6.65386 6.96628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.060 3.940 3 O -0.355 6.355 4 C 0.473 3.527 5 O -0.502 6.502 6 C -0.109 4.109 7 H 0.134 0.866 8 C -0.135 4.135 9 C 0.082 3.918 10 F -0.180 7.180 11 C 0.130 3.870 12 N -0.692 5.692 13 C 0.324 3.676 14 N -0.550 5.550 15 C 0.119 3.881 16 C -0.306 4.306 17 C -0.010 4.010 18 O -0.537 6.537 19 Si 0.655 3.345 20 S 0.094 5.906 21 C -0.128 4.128 22 H 0.068 0.932 23 H 0.068 0.932 24 H 0.082 0.918 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.109 0.891 28 H 0.099 0.901 29 H 0.084 0.916 30 H 0.092 0.908 31 H 0.418 0.582 32 H 0.177 0.823 33 H 0.122 0.878 34 H 0.380 0.620 35 H -0.235 1.235 36 H -0.241 1.241 37 H 0.099 0.901 38 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.397 0.323 -0.022 5.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.013 4.013 3 O -0.272 6.272 4 C 0.316 3.684 5 O -0.389 6.389 6 C -0.128 4.128 7 H 0.151 0.849 8 C -0.173 4.173 9 C 0.063 3.937 10 F -0.160 7.160 11 C 0.004 3.996 12 N -0.333 5.333 13 C -0.046 4.046 14 N -0.275 5.275 15 C -0.032 4.032 16 C -0.429 4.429 17 C -0.125 4.125 18 O -0.342 6.342 19 Si 0.555 3.445 20 S 0.343 5.657 21 C -0.166 4.166 22 H 0.087 0.913 23 H 0.087 0.913 24 H 0.101 0.899 25 H 0.090 0.910 26 H 0.090 0.910 27 H 0.128 0.872 28 H 0.118 0.882 29 H 0.102 0.898 30 H 0.110 0.890 31 H 0.256 0.744 32 H 0.194 0.806 33 H 0.139 0.861 34 H 0.227 0.773 35 H -0.159 1.159 36 H -0.165 1.165 37 H 0.117 0.883 38 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -5.033 1.234 -0.249 5.188 hybrid contribution 0.797 -0.666 -0.372 1.103 sum -4.236 0.568 -0.621 4.319 Atomic orbital electron populations 1.21826 0.92246 1.03335 1.03699 1.23113 0.95680 0.79669 1.02841 1.86517 1.24158 1.32919 1.83599 1.23292 0.80824 0.91969 0.72338 1.90701 1.60518 1.42771 1.44912 1.22518 0.97166 0.91818 1.01312 0.84852 1.23636 0.96620 1.01122 0.95895 1.22010 0.97049 0.81100 0.93516 1.92909 1.97138 1.42376 1.83591 1.21799 0.98790 0.90199 0.88826 1.43763 1.34406 1.30441 1.24640 1.23665 0.93447 0.94205 0.93288 1.66490 1.09439 1.31628 1.19982 1.21321 0.98620 0.94444 0.88778 1.25614 1.04997 1.04713 1.07557 1.24120 1.04215 1.00542 0.83589 1.86517 1.33237 1.62780 1.51671 0.94990 0.89423 0.77181 0.82881 1.84005 1.32667 1.27383 1.21623 1.23565 0.93700 0.98266 1.01034 0.91334 0.91332 0.89935 0.91000 0.91013 0.87240 0.88216 0.89775 0.88983 0.74436 0.80619 0.86105 0.77257 1.15869 1.16477 0.88275 0.86139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.33 10.29 37.16 0.38 0.72 16 2 C 0.06 -0.02 6.19 37.16 0.23 0.21 16 3 O -0.36 -0.29 10.22 -39.28 -0.40 -0.69 16 4 C 0.47 0.42 7.49 36.00 0.27 0.69 16 5 O -0.50 -1.83 15.65 -18.75 -0.29 -2.13 16 6 C -0.11 0.21 4.23 -90.87 -0.38 -0.18 16 7 H 0.13 -0.39 8.14 -51.92 -0.42 -0.82 16 8 C -0.14 0.42 7.09 -25.83 -0.18 0.23 16 9 C 0.08 -0.19 1.64 -89.81 -0.15 -0.34 16 10 F -0.18 0.09 16.86 2.25 0.04 0.13 16 11 C 0.13 -0.19 5.62 -4.04 -0.02 -0.21 16 12 N -0.69 0.62 5.63 -62.29 -0.35 0.27 16 13 C 0.32 0.36 8.09 -87.67 -0.71 -0.35 16 14 N -0.55 -1.52 10.14 -15.21 -0.15 -1.67 16 15 C 0.12 0.21 11.22 -19.14 -0.21 0.00 16 16 C -0.31 -0.20 5.74 -36.02 -0.21 -0.40 16 17 C -0.01 0.00 2.99 36.01 0.11 0.11 16 18 O -0.54 -0.06 12.87 -35.23 -0.45 -0.51 16 19 Si 0.66 -0.48 31.06 -169.99 -5.28 -5.76 16 20 S 0.09 -0.01 20.57 -107.50 -2.21 -2.22 16 21 C -0.13 0.27 6.86 -25.91 -0.18 0.09 16 22 H 0.07 -0.15 8.14 -51.93 -0.42 -0.57 16 23 H 0.07 -0.14 8.14 -51.93 -0.42 -0.56 16 24 H 0.08 -0.27 8.14 -51.93 -0.42 -0.70 16 25 H 0.07 -0.02 8.13 -51.93 -0.42 -0.44 16 26 H 0.07 -0.03 8.13 -51.93 -0.42 -0.45 16 27 H 0.11 -0.35 7.94 -51.93 -0.41 -0.77 16 28 H 0.10 -0.39 8.14 -51.93 -0.42 -0.82 16 29 H 0.08 -0.04 8.14 -51.93 -0.42 -0.46 16 30 H 0.09 -0.14 7.98 -51.93 -0.41 -0.55 16 31 H 0.42 -1.03 8.35 -40.82 -0.34 -1.37 16 32 H 0.18 0.13 8.06 -52.49 -0.42 -0.30 16 33 H 0.12 0.00 7.96 -51.93 -0.41 -0.42 16 34 H 0.38 -1.34 8.70 45.56 0.40 -0.94 16 35 H -0.24 -0.45 7.11 56.52 0.40 -0.04 16 36 H -0.24 -0.37 7.11 56.52 0.40 0.04 16 37 H 0.10 -0.24 8.14 -51.93 -0.42 -0.67 16 38 H 0.12 -0.20 7.39 -51.93 -0.38 -0.58 16 LS Contribution 344.32 15.07 5.19 5.19 Total: 0.00 -7.28 344.32 -9.97 -17.24 By element: Atomic # 1 Polarization: -5.43 SS G_CDS: -4.99 Total: -10.42 kcal Atomic # 6 Polarization: 1.62 SS G_CDS: -1.06 Total: 0.56 kcal Atomic # 7 Polarization: -0.90 SS G_CDS: -0.51 Total: -1.40 kcal Atomic # 8 Polarization: -2.18 SS G_CDS: -1.15 Total: -3.32 kcal Atomic # 9 Polarization: 0.09 SS G_CDS: 0.04 Total: 0.13 kcal Atomic # 14 Polarization: -0.48 SS G_CDS: -5.28 Total: -5.76 kcal Atomic # 16 Polarization: -0.01 SS G_CDS: -2.21 Total: -2.22 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -7.28 -9.97 -17.24 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_15509218_15704118.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.045 kcal (2) G-P(sol) polarization free energy of solvation -7.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds