Wall clock time and date at job start Mon Mar 8 2021 04:39:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.45206 * 109.46650 * 2 1 4 4 C 1.34237 * 116.99652 * 180.02562 * 3 2 1 5 5 O 1.20829 * 119.99852 * 0.02562 * 4 3 2 6 6 C 1.50691 * 119.99835 * 180.02562 * 4 3 2 7 7 H 1.09010 * 112.85062 * 311.19301 * 6 4 3 8 8 C 1.53951 * 113.74671 * 82.40346 * 6 4 3 9 9 C 1.53771 * 87.02205 * 139.94285 * 8 6 4 10 10 F 1.39896 * 113.61707 * 89.23004 * 9 8 6 11 11 C 1.53003 * 113.61499 * 220.05102 * 9 8 6 12 12 N 1.46507 * 109.46868 * 279.13362 * 11 9 8 13 13 C 1.38615 * 119.99931 * 179.97438 * 12 11 9 14 14 N 1.29689 * 124.94850 * 359.75421 * 13 12 11 15 15 C 1.32120 * 116.86474 * 179.97438 * 14 13 12 16 16 C 1.33321 * 114.57889 * 359.97438 * 15 14 13 17 17 C 1.50706 * 125.95219 * 180.02562 * 16 15 14 18 18 O 1.42904 * 109.46750 * 299.99852 * 17 16 15 19 19 Si 1.86294 * 109.47430 * 179.97438 * 17 16 15 20 20 S 1.70959 * 124.94847 * 179.44708 * 13 12 11 21 21 C 1.53783 * 87.17659 * 334.63899 * 9 8 6 22 22 H 1.08996 * 109.47459 * 299.99882 * 1 2 3 23 23 H 1.09004 * 109.47720 * 59.99611 * 1 2 3 24 24 H 1.09004 * 109.47126 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47031 * 240.00286 * 2 1 3 26 26 H 1.08993 * 109.47316 * 120.00189 * 2 1 3 27 27 H 1.09004 * 113.61308 * 25.41571 * 8 6 4 28 28 H 1.09001 * 113.66521 * 254.47580 * 8 6 4 29 29 H 1.08996 * 109.47758 * 159.13801 * 11 9 8 30 30 H 1.09001 * 109.47075 * 39.13285 * 11 9 8 31 31 H 0.96996 * 119.99780 * 359.72449 * 12 11 9 32 32 H 1.08000 * 122.70581 * 179.97438 * 15 14 13 33 33 H 1.08994 * 109.47067 * 59.99269 * 17 16 15 34 34 H 0.96708 * 113.99789 * 300.00005 * 18 17 16 35 35 H 1.48499 * 110.00285 * 179.97438 * 19 17 16 36 36 H 1.48502 * 109.99895 * 301.31781 * 19 17 16 37 37 H 1.08994 * 113.61798 * 139.94033 * 21 9 8 38 38 H 1.09000 * 113.61287 * 270.84561 * 21 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3691 0.0000 4 6 3.3447 1.5450 -0.0005 5 8 4.0807 0.5867 -0.0015 6 6 3.9206 2.9375 0.0000 7 1 3.4706 3.5820 -0.7553 8 6 3.9860 3.5807 1.3972 9 6 5.3567 4.1435 0.9858 10 9 5.2850 5.3938 0.3625 11 6 6.3994 4.0962 2.1045 12 7 6.1983 5.2320 3.0079 13 6 7.0288 5.4007 4.1048 14 7 8.0073 4.6117 4.4240 15 6 8.6981 4.9248 5.5058 16 6 8.2841 6.0290 6.1278 17 6 8.8844 6.6179 7.3784 18 8 8.7993 5.6664 8.4413 19 14 7.9511 8.1601 7.8486 20 16 6.9171 6.6832 5.2297 21 6 5.4581 2.9682 -0.0008 22 1 -0.3634 0.5138 0.8899 23 1 -0.3635 0.5139 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8899 27 1 4.0375 2.8559 2.2096 28 1 3.2300 4.3487 1.5611 29 1 7.3987 4.1484 1.6724 30 1 6.2926 3.1655 2.6617 31 1 5.4862 5.8679 2.8363 32 1 9.5309 4.3340 5.8577 33 1 9.9298 6.8673 7.1970 34 1 7.8958 5.3980 8.6575 35 1 8.5330 8.7502 9.0809 36 1 8.0057 9.1450 6.7386 37 1 5.8889 3.2424 -0.9637 38 1 5.9129 2.0756 0.4288 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_15509218_15704118.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 04:39:27 Heat of formation + Delta-G solvation = -83.150318 kcal Electronic energy + Delta-G solvation = -23691.284368 eV Core-core repulsion = 19771.076437 eV Total energy + Delta-G solvation = -3920.207931 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 317.093 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -48.94995 -41.83800 -40.76819 -39.34442 -38.01163 -37.56985 -36.42843 -32.71674 -31.68787 -29.89839 -27.23660 -26.84342 -26.08850 -24.38369 -23.72725 -22.14322 -20.91042 -20.68874 -19.96629 -18.91427 -18.20281 -17.87022 -17.68532 -17.23004 -16.94224 -16.57210 -16.48574 -15.94693 -15.71893 -15.65937 -15.52806 -15.19596 -14.88029 -14.59711 -14.49314 -14.08097 -14.04599 -13.66802 -13.57942 -12.99597 -12.92803 -12.89627 -12.61067 -12.50529 -12.45835 -12.05625 -11.86926 -11.61398 -11.58057 -11.42610 -11.23036 -10.83323 -10.31489 -10.18388 -8.80175 -5.10669 -0.08850 -0.02012 0.64551 1.00805 1.26788 1.56581 1.58638 1.88512 1.95084 2.04517 2.85310 2.96876 3.14406 3.25514 3.38224 3.51809 3.68551 3.84684 3.92481 3.96045 4.02665 4.16703 4.27598 4.30965 4.47994 4.48427 4.54594 4.55399 4.69444 4.73704 4.80141 4.81958 4.88525 4.98674 5.11797 5.15371 5.40352 5.68224 6.03989 6.60825 6.73183 6.94907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.053 3.947 3 O -0.359 6.359 4 C 0.474 3.526 5 O -0.535 6.535 6 C -0.108 4.108 7 H 0.148 0.852 8 C -0.126 4.126 9 C 0.091 3.909 10 F -0.188 7.188 11 C 0.133 3.867 12 N -0.685 5.685 13 C 0.313 3.687 14 N -0.577 5.577 15 C 0.103 3.897 16 C -0.307 4.307 17 C -0.014 4.014 18 O -0.550 6.550 19 Si 0.731 3.269 20 S 0.122 5.878 21 C -0.128 4.128 22 H 0.070 0.930 23 H 0.068 0.932 24 H 0.095 0.905 25 H 0.067 0.933 26 H 0.069 0.931 27 H 0.112 0.888 28 H 0.115 0.885 29 H 0.073 0.927 30 H 0.092 0.908 31 H 0.426 0.574 32 H 0.179 0.821 33 H 0.119 0.881 34 H 0.395 0.605 35 H -0.272 1.272 36 H -0.268 1.268 37 H 0.103 0.897 38 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.458 0.843 0.066 6.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.020 4.020 3 O -0.276 6.276 4 C 0.318 3.682 5 O -0.425 6.425 6 C -0.126 4.126 7 H 0.166 0.834 8 C -0.163 4.163 9 C 0.072 3.928 10 F -0.168 7.168 11 C 0.007 3.993 12 N -0.326 5.326 13 C -0.057 4.057 14 N -0.304 5.304 15 C -0.047 4.047 16 C -0.430 4.430 17 C -0.127 4.127 18 O -0.358 6.358 19 Si 0.634 3.366 20 S 0.372 5.628 21 C -0.167 4.167 22 H 0.089 0.911 23 H 0.087 0.913 24 H 0.114 0.886 25 H 0.086 0.914 26 H 0.088 0.912 27 H 0.130 0.870 28 H 0.133 0.867 29 H 0.091 0.909 30 H 0.111 0.889 31 H 0.265 0.735 32 H 0.196 0.804 33 H 0.136 0.864 34 H 0.245 0.755 35 H -0.197 1.197 36 H -0.194 1.194 37 H 0.121 0.879 38 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -6.132 1.746 -0.171 6.378 hybrid contribution 1.136 -0.827 -0.396 1.460 sum -4.996 0.919 -0.567 5.111 Atomic orbital electron populations 1.21829 0.90744 1.04254 1.03770 1.23266 0.96900 0.79268 1.02561 1.86528 1.24172 1.33539 1.83343 1.23817 0.80605 0.92630 0.71155 1.90684 1.61124 1.44061 1.46594 1.22637 0.96997 0.90445 1.02570 0.83431 1.23631 0.96288 1.01225 0.95178 1.21897 0.97312 0.80564 0.93029 1.92896 1.97184 1.42953 1.83754 1.21757 0.98546 0.90102 0.88913 1.43812 1.34148 1.30621 1.24056 1.23874 0.93435 0.94504 0.93912 1.66482 1.10371 1.32774 1.20740 1.21431 0.99077 0.95157 0.89058 1.25738 1.05194 1.04416 1.07625 1.24232 1.04264 1.00865 0.83358 1.86483 1.34906 1.62832 1.51544 0.94111 0.88179 0.75002 0.79308 1.83846 1.31852 1.26355 1.20783 1.23565 0.93722 0.98082 1.01289 0.91136 0.91308 0.88618 0.91437 0.91222 0.86976 0.86693 0.90874 0.88949 0.73498 0.80432 0.86422 0.75462 1.19726 1.19441 0.87890 0.86764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.69 10.29 71.98 0.74 1.43 16 2 C 0.05 -0.02 6.19 71.98 0.45 0.43 16 3 O -0.36 -0.64 10.22 -51.48 -0.53 -1.17 16 4 C 0.47 1.03 7.49 71.23 0.53 1.56 16 5 O -0.54 -4.47 15.65 21.96 0.34 -4.13 16 6 C -0.11 0.44 4.23 -10.96 -0.05 0.39 16 7 H 0.15 -1.01 8.14 -2.38 -0.02 -1.03 16 8 C -0.13 0.87 7.09 31.18 0.22 1.09 16 9 C 0.09 -0.44 1.64 -10.27 -0.02 -0.46 16 10 F -0.19 0.32 16.86 44.97 0.76 1.08 16 11 C 0.13 -0.35 5.62 86.38 0.49 0.13 16 12 N -0.69 1.36 5.63 -350.99 -1.98 -0.62 16 13 C 0.31 0.71 8.09 179.32 1.45 2.16 16 14 N -0.58 -3.53 10.14 -202.03 -2.05 -5.58 16 15 C 0.10 0.43 11.22 83.54 0.94 1.37 16 16 C -0.31 -0.41 5.74 24.58 0.14 -0.27 16 17 C -0.01 0.00 2.99 71.24 0.21 0.22 16 18 O -0.55 0.00 12.87 -148.98 -1.92 -1.91 16 19 Si 0.73 -1.17 31.06 68.60 2.13 0.96 16 20 S 0.12 -0.08 20.57 -56.49 -1.16 -1.24 16 21 C -0.13 0.51 6.86 31.12 0.21 0.72 16 22 H 0.07 -0.34 8.14 -2.39 -0.02 -0.36 16 23 H 0.07 -0.30 8.14 -2.38 -0.02 -0.32 16 24 H 0.10 -0.70 8.14 -2.38 -0.02 -0.72 16 25 H 0.07 0.02 8.13 -2.39 -0.02 0.00 16 26 H 0.07 -0.01 8.13 -2.39 -0.02 -0.03 16 27 H 0.11 -0.79 7.94 -2.38 -0.02 -0.81 16 28 H 0.11 -1.10 8.14 -2.39 -0.02 -1.12 16 29 H 0.07 -0.01 8.14 -2.39 -0.02 -0.03 16 30 H 0.09 -0.23 7.98 -2.39 -0.02 -0.25 16 31 H 0.43 -2.39 8.35 -92.71 -0.77 -3.17 16 32 H 0.18 0.45 8.06 -2.91 -0.02 0.43 16 33 H 0.12 0.02 7.96 -2.39 -0.02 0.00 16 34 H 0.40 -3.01 8.70 -74.05 -0.64 -3.65 16 35 H -0.27 -1.19 7.11 99.48 0.71 -0.49 16 36 H -0.27 -0.81 7.11 99.48 0.71 -0.10 16 37 H 0.10 -0.49 8.14 -2.39 -0.02 -0.51 16 38 H 0.11 -0.27 7.39 -2.39 -0.02 -0.29 16 Total: 0.00 -16.90 344.32 0.64 -16.26 By element: Atomic # 1 Polarization: -12.16 SS G_CDS: -0.28 Total: -12.43 kcal Atomic # 6 Polarization: 3.47 SS G_CDS: 5.32 Total: 8.78 kcal Atomic # 7 Polarization: -2.17 SS G_CDS: -4.03 Total: -6.20 kcal Atomic # 8 Polarization: -5.11 SS G_CDS: -2.10 Total: -7.21 kcal Atomic # 9 Polarization: 0.32 SS G_CDS: 0.76 Total: 1.08 kcal Atomic # 14 Polarization: -1.17 SS G_CDS: 2.13 Total: 0.96 kcal Atomic # 16 Polarization: -0.08 SS G_CDS: -1.16 Total: -1.24 kcal Total: -16.90 0.64 -16.26 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_15509218_15704118.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.890 kcal (2) G-P(sol) polarization free energy of solvation -16.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds