Wall clock time and date at job start Mon Mar 8 2021 04:39:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 O 1.45199 * 109.47381 * 2 1 4 4 C 1.34229 * 117.00332 * 180.02562 * 3 2 1 5 5 O 1.20823 * 120.00165 * 0.02562 * 4 3 2 6 6 C 1.50706 * 119.99756 * 179.97438 * 4 3 2 7 7 H 1.09001 * 112.84618 * 48.80358 * 6 4 3 8 8 C 1.53781 * 113.61143 * 179.97438 * 6 4 3 9 9 C 1.53785 * 87.07778 * 140.06445 * 8 6 4 10 10 F 1.39904 * 113.60776 * 89.20301 * 9 8 6 11 11 C 1.52998 * 113.61583 * 220.01869 * 9 8 6 12 12 N 1.46500 * 109.47191 * 185.00569 * 11 9 8 13 13 C 1.38604 * 120.00311 * 180.02562 * 12 11 9 14 14 N 1.29690 * 124.95326 * 180.30188 * 13 12 11 15 15 C 1.32127 * 116.86535 * 180.20561 * 14 13 12 16 16 C 1.50699 * 122.70853 * 179.79813 * 15 14 13 17 17 O 1.42892 * 109.47249 * 149.71069 * 16 15 14 18 18 Si 1.86298 * 109.47032 * 29.70455 * 16 15 14 19 19 C 1.33327 * 114.57736 * 359.52840 * 15 14 13 20 20 C 1.50703 * 125.94578 * 180.26819 * 19 15 14 21 21 S 1.70973 * 124.94625 * 0.02562 * 13 12 11 22 22 C 1.53773 * 87.08269 * 334.56971 * 9 8 6 23 23 H 1.09003 * 109.47128 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47084 * 299.99978 * 1 2 3 25 25 H 1.08997 * 109.47098 * 60.00246 * 1 2 3 26 26 H 1.09008 * 109.47356 * 239.99932 * 2 1 3 27 27 H 1.08998 * 109.47509 * 120.00099 * 2 1 3 28 28 H 1.09002 * 113.61291 * 25.52639 * 8 6 4 29 29 H 1.08999 * 113.69436 * 254.62324 * 8 6 4 30 30 H 1.08995 * 109.47059 * 64.99978 * 11 9 8 31 31 H 1.09002 * 109.46893 * 305.00264 * 11 9 8 32 32 H 0.97007 * 119.99664 * 359.97438 * 12 11 9 33 33 H 1.09004 * 109.46453 * 269.71138 * 16 15 14 34 34 H 0.96703 * 114.00176 * 299.99748 * 17 16 15 35 35 H 1.48506 * 109.99834 * 58.68765 * 18 16 15 36 36 H 1.48502 * 110.00011 * 180.02562 * 18 16 15 37 37 H 1.09001 * 109.46908 * 89.99877 * 20 19 15 38 38 H 1.09001 * 109.46600 * 209.99645 * 20 19 15 39 39 H 1.08990 * 109.47386 * 329.99671 * 20 19 15 40 40 H 1.09000 * 113.61651 * 139.97940 * 22 9 8 41 41 H 1.09004 * 113.61572 * 270.87872 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0807 0.5867 -0.0015 6 6 3.9206 2.9375 -0.0012 7 1 3.4713 3.5816 0.7547 8 6 5.4581 2.9682 -0.0011 9 6 5.3563 4.1436 -0.9875 10 9 5.2850 5.3939 -0.3639 11 6 6.3984 4.0965 -2.1067 12 7 6.2980 5.3116 -2.9190 13 6 7.1464 5.4950 -3.9995 14 7 7.1451 6.5327 -4.7775 15 6 8.0227 6.5396 -5.7651 16 6 8.1325 7.6759 -6.7489 17 8 9.4835 7.7853 -7.2015 18 14 7.6242 9.2655 -5.9210 19 6 8.8071 5.4628 -5.8175 20 6 9.8943 5.2086 -6.8298 21 16 8.3517 4.3892 -4.4971 22 6 3.9862 3.5784 -1.3974 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8899 28 1 5.9127 2.0756 -0.4310 29 1 5.8908 3.2420 0.9612 30 1 6.2183 3.2238 -2.7344 31 1 7.3959 4.0316 -1.6719 32 1 5.6372 5.9874 -2.7009 33 1 7.4787 7.4841 -7.5998 34 1 10.1221 7.9563 -6.4957 35 1 8.4877 9.5219 -4.7404 36 1 7.7274 10.3938 -6.8810 37 1 10.8366 5.6130 -6.4602 38 1 9.9974 4.1354 -6.9903 39 1 9.6350 5.6935 -7.7708 40 1 3.2291 4.3451 -1.5619 41 1 4.0383 2.8527 -2.2091 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_15509218_15704122.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 04:39:30 Heat of formation + Delta-G solvation = -84.055344 kcal Electronic energy + Delta-G solvation = -25778.122826 eV Core-core repulsion = 21702.338031 eV Total energy + Delta-G solvation = -4075.784795 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 331.109 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -48.95750 -41.83368 -41.09108 -39.41179 -38.13902 -37.56235 -36.51330 -32.97189 -32.65699 -30.31316 -28.82681 -27.15945 -26.33464 -25.53443 -24.21713 -23.75399 -22.16414 -20.96017 -20.51906 -19.24857 -18.94715 -18.13673 -17.85663 -17.72400 -17.25530 -17.21605 -16.72947 -16.56333 -15.97948 -15.74991 -15.63381 -15.50237 -15.15251 -14.64825 -14.59839 -14.30537 -14.24523 -13.86807 -13.78687 -13.66655 -13.50272 -13.37503 -12.99470 -12.92591 -12.82423 -12.60195 -12.50893 -12.45894 -12.03123 -11.86767 -11.58072 -11.56156 -11.39017 -11.13509 -10.68621 -10.52827 -10.06006 -8.68559 -4.78826 -0.05169 0.11309 0.70391 1.01773 1.28869 1.55872 1.66618 1.79476 1.84339 1.98422 2.85269 2.94580 3.08717 3.25409 3.29681 3.39815 3.50469 3.82412 3.96604 4.02920 4.11470 4.13420 4.23168 4.31444 4.31633 4.39724 4.47243 4.53178 4.55118 4.73494 4.78342 4.80328 4.82114 4.86331 4.88670 5.05547 5.11768 5.13538 5.29388 5.41250 5.48066 6.21433 6.40852 6.61583 6.88367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.054 3.946 3 O -0.361 6.361 4 C 0.474 3.526 5 O -0.533 6.533 6 C -0.109 4.109 7 H 0.145 0.855 8 C -0.127 4.127 9 C 0.094 3.906 10 F -0.187 7.187 11 C 0.113 3.887 12 N -0.687 5.687 13 C 0.311 3.689 14 N -0.557 5.557 15 C 0.057 3.943 16 C -0.039 4.039 17 O -0.532 6.532 18 Si 0.778 3.222 19 C -0.254 4.254 20 C -0.063 4.063 21 S 0.122 5.878 22 C -0.128 4.128 23 H 0.095 0.905 24 H 0.067 0.933 25 H 0.069 0.931 26 H 0.070 0.930 27 H 0.068 0.932 28 H 0.120 0.880 29 H 0.104 0.896 30 H 0.105 0.895 31 H 0.089 0.911 32 H 0.418 0.582 33 H 0.134 0.866 34 H 0.385 0.615 35 H -0.307 1.307 36 H -0.291 1.291 37 H 0.076 0.924 38 H 0.066 0.934 39 H 0.087 0.913 40 H 0.109 0.891 41 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.274 -3.323 1.636 4.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.019 4.019 3 O -0.277 6.277 4 C 0.318 3.682 5 O -0.423 6.423 6 C -0.128 4.128 7 H 0.163 0.837 8 C -0.165 4.165 9 C 0.076 3.924 10 F -0.168 7.168 11 C -0.012 4.012 12 N -0.329 5.329 13 C -0.060 4.060 14 N -0.285 5.285 15 C -0.073 4.073 16 C -0.152 4.152 17 O -0.339 6.339 18 Si 0.684 3.316 19 C -0.377 4.377 20 C -0.122 4.122 21 S 0.370 5.630 22 C -0.166 4.166 23 H 0.114 0.886 24 H 0.086 0.914 25 H 0.088 0.912 26 H 0.089 0.911 27 H 0.086 0.914 28 H 0.139 0.861 29 H 0.123 0.877 30 H 0.122 0.878 31 H 0.107 0.893 32 H 0.258 0.742 33 H 0.152 0.848 34 H 0.234 0.766 35 H -0.235 1.235 36 H -0.219 1.219 37 H 0.095 0.905 38 H 0.085 0.915 39 H 0.106 0.894 40 H 0.128 0.872 41 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -3.164 -3.661 1.923 5.207 hybrid contribution 0.887 0.548 0.012 1.042 sum -2.277 -3.113 1.935 4.315 Atomic orbital electron populations 1.21831 0.90895 1.04237 1.03715 1.23260 0.96806 0.79252 1.02619 1.86528 1.24294 1.33568 1.83334 1.23793 0.80578 0.92608 0.71181 1.90678 1.61048 1.43979 1.46568 1.22599 0.97287 0.90459 1.02458 0.83710 1.23604 0.93520 0.98001 1.01333 1.21812 0.97056 0.80683 0.92887 1.92904 1.97165 1.43051 1.83650 1.22132 1.00219 0.87459 0.91371 1.43760 1.37780 1.23783 1.27573 1.23419 0.95725 0.93747 0.93157 1.65716 1.28421 1.25554 1.08827 1.20228 0.93717 0.97580 0.95813 1.24452 0.87102 1.03180 1.00469 1.86582 1.15921 1.93307 1.38064 0.92901 0.91469 0.72374 0.74807 1.25365 1.08887 0.98293 1.05136 1.20213 0.94061 1.01930 0.96004 1.83838 1.30564 1.22580 1.25989 1.23644 0.96429 1.01190 0.95333 0.88611 0.91363 0.91222 0.91117 0.91372 0.86125 0.87740 0.87755 0.89285 0.74247 0.84844 0.76606 1.23464 1.21904 0.90515 0.91541 0.89438 0.87249 0.86585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.73 10.29 71.98 0.74 1.47 16 2 C 0.05 -0.05 6.19 71.98 0.45 0.39 16 3 O -0.36 -0.41 10.22 -51.40 -0.53 -0.94 16 4 C 0.47 0.44 7.49 71.24 0.53 0.97 16 5 O -0.53 -3.48 15.65 21.97 0.34 -3.14 16 6 C -0.11 0.57 4.24 -11.01 -0.05 0.53 16 7 H 0.15 -1.06 8.14 -2.39 -0.02 -1.08 16 8 C -0.13 0.81 6.86 31.12 0.21 1.03 16 9 C 0.09 -0.62 1.74 -10.27 -0.02 -0.64 16 10 F -0.19 0.40 16.58 44.97 0.75 1.15 16 11 C 0.11 -0.72 5.28 86.38 0.46 -0.26 16 12 N -0.69 1.41 5.61 -351.01 -1.97 -0.56 16 13 C 0.31 0.77 8.24 179.32 1.48 2.25 16 14 N -0.56 -3.05 8.94 -189.86 -1.70 -4.75 16 15 C 0.06 0.26 5.92 41.40 0.25 0.51 16 16 C -0.04 -0.10 2.82 71.24 0.20 0.10 16 17 O -0.53 -1.22 9.90 -148.98 -1.47 -2.69 16 18 Si 0.78 2.90 32.08 68.60 2.20 5.10 16 19 C -0.25 -0.80 6.50 24.58 0.16 -0.64 16 20 C -0.06 0.00 8.95 71.24 0.64 0.64 16 21 S 0.12 0.09 22.32 -56.49 -1.26 -1.18 16 22 C -0.13 1.00 7.08 31.12 0.22 1.22 16 23 H 0.10 -0.72 8.14 -2.39 -0.02 -0.74 16 24 H 0.07 -0.31 8.14 -2.39 -0.02 -0.33 16 25 H 0.07 -0.34 8.14 -2.39 -0.02 -0.36 16 26 H 0.07 -0.07 8.13 -2.38 -0.02 -0.09 16 27 H 0.07 -0.03 8.13 -2.39 -0.02 -0.05 16 28 H 0.12 -0.74 7.39 -2.39 -0.02 -0.75 16 29 H 0.10 -0.74 8.14 -2.39 -0.02 -0.76 16 30 H 0.10 -0.92 7.84 -2.39 -0.02 -0.94 16 31 H 0.09 -0.62 8.14 -2.39 -0.02 -0.64 16 32 H 0.42 -0.99 8.15 -92.70 -0.76 -1.74 16 33 H 0.13 0.07 7.96 -2.38 -0.02 0.06 16 34 H 0.38 -0.80 8.68 -74.06 -0.64 -1.44 16 35 H -0.31 -3.16 7.11 99.48 0.71 -2.46 16 36 H -0.29 -2.50 7.11 99.48 0.71 -1.80 16 37 H 0.08 -0.13 8.14 -2.39 -0.02 -0.15 16 38 H 0.07 -0.09 8.14 -2.39 -0.02 -0.11 16 39 H 0.09 0.10 6.61 -2.39 -0.02 0.08 16 40 H 0.11 -0.97 8.14 -2.39 -0.02 -0.99 16 41 H 0.12 -1.02 7.85 -2.38 -0.02 -1.04 16 Total: 0.00 -16.12 361.14 1.34 -14.77 By element: Atomic # 1 Polarization: -15.04 SS G_CDS: -0.29 Total: -15.33 kcal Atomic # 6 Polarization: 2.29 SS G_CDS: 5.27 Total: 7.56 kcal Atomic # 7 Polarization: -1.64 SS G_CDS: -3.66 Total: -5.31 kcal Atomic # 8 Polarization: -5.11 SS G_CDS: -1.66 Total: -6.76 kcal Atomic # 9 Polarization: 0.40 SS G_CDS: 0.75 Total: 1.15 kcal Atomic # 14 Polarization: 2.90 SS G_CDS: 2.20 Total: 5.10 kcal Atomic # 16 Polarization: 0.09 SS G_CDS: -1.26 Total: -1.18 kcal Total: -16.12 1.34 -14.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_15509218_15704122.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.281 kcal (2) G-P(sol) polarization free energy of solvation -16.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds