Wall clock time and date at job start Mon Mar 8 2021 05:18:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.38995 * 120.00044 * 2 1 4 4 N 1.32398 * 119.70996 * 10.15524 * 3 2 1 5 5 C 1.31971 * 121.62078 * 179.71107 * 4 3 2 6 6 C 1.38018 * 120.85785 * 0.56810 * 5 4 3 7 7 C 1.50701 * 120.33123 * 179.74456 * 6 5 4 8 8 O 1.42906 * 109.46774 * 119.97873 * 7 6 5 9 9 Si 1.86296 * 109.47485 * 359.97438 * 7 6 5 10 10 C 1.38880 * 119.33099 * 359.72282 * 6 5 4 11 11 C 1.38293 * 118.50326 * 359.97438 * 10 6 5 12 12 C 1.46504 * 119.99853 * 179.97438 * 2 1 3 13 13 H 1.08996 * 109.47172 * 119.58340 * 12 2 1 14 14 C 1.52998 * 109.46989 * 239.58675 * 12 2 1 15 15 C 1.52999 * 109.47480 * 60.00043 * 14 12 2 16 16 C 1.52997 * 109.47303 * 59.99733 * 15 14 12 17 17 H 1.09008 * 109.47293 * 59.99817 * 16 15 14 18 18 O 1.42891 * 109.47239 * 180.02562 * 16 15 14 19 19 C 1.53006 * 109.47321 * 300.00524 * 16 15 14 20 20 C 1.52999 * 109.47360 * 59.99511 * 19 16 15 21 21 H 1.09001 * 109.46777 * 275.83832 * 1 2 3 22 22 H 1.09000 * 109.46759 * 35.83639 * 1 2 3 23 23 H 1.09000 * 109.47388 * 155.83472 * 1 2 3 24 24 H 1.08007 * 119.56808 * 180.29246 * 5 4 3 25 25 H 1.08999 * 109.47336 * 239.97230 * 7 6 5 26 26 H 0.96703 * 113.99833 * 179.97438 * 8 7 6 27 27 H 1.48496 * 109.99853 * 298.67959 * 9 7 6 28 28 H 1.48500 * 110.00013 * 59.99924 * 9 7 6 29 29 H 1.07998 * 120.74834 * 179.97438 * 10 6 5 30 30 H 1.08001 * 120.45121 * 179.97438 * 11 10 6 31 31 H 1.09003 * 109.47024 * 299.99455 * 14 12 2 32 32 H 1.09007 * 109.46920 * 180.02562 * 14 12 2 33 33 H 1.08998 * 109.46603 * 299.99989 * 15 14 12 34 34 H 1.08993 * 109.47406 * 180.02562 * 15 14 12 35 35 H 0.96700 * 114.00089 * 299.99897 * 18 16 15 36 36 H 1.08997 * 109.46762 * 299.99580 * 19 16 15 37 37 H 1.08999 * 109.47655 * 179.97438 * 19 16 15 38 38 H 1.09007 * 109.47141 * 60.00249 * 20 19 16 39 39 H 1.08993 * 109.47406 * 180.02562 * 20 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1600 1.2037 0.0000 4 7 1.5078 2.3380 0.2028 5 6 2.1307 3.5014 0.2161 6 6 3.4926 3.5777 0.0060 7 6 4.1909 4.9131 0.0181 8 8 5.1818 4.9231 1.0477 9 14 2.9467 6.2617 0.3403 10 6 4.2131 2.4113 -0.2162 11 6 3.5342 1.2065 -0.2183 12 6 2.1975 -1.2688 0.0006 13 1 2.8185 -1.3302 -0.8931 14 6 3.0849 -1.3448 1.2446 15 6 2.2132 -1.2586 2.4990 16 6 1.2189 -2.4214 2.5100 17 1 1.7639 -3.3655 2.5104 18 8 0.4044 -2.3406 3.6812 19 6 0.3314 -2.3455 1.2659 20 6 1.2032 -2.4316 0.0115 21 1 -0.3633 0.1045 1.0224 22 1 -0.3633 0.8331 -0.6017 23 1 -0.3634 -0.9376 -0.4207 24 1 1.5665 4.4060 0.3893 25 1 4.6683 5.0822 -0.9471 26 1 5.6724 5.7539 1.1134 27 1 1.9287 6.2823 -0.7407 28 1 2.2888 6.0426 1.6534 29 1 5.2795 2.4445 -0.3836 30 1 4.0632 0.2804 -0.3882 31 1 3.7933 -0.5163 1.2367 32 1 3.6302 -2.2886 1.2448 33 1 1.6682 -0.3147 2.4985 34 1 2.8454 -1.3123 3.3852 35 1 0.9014 -2.3824 4.5097 36 1 -0.2135 -1.4016 1.2655 37 1 -0.3766 -3.1742 1.2735 38 1 1.7482 -3.3757 0.0119 39 1 0.5710 -2.3771 -0.8747 There are 49 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 49 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_15557738_13915762.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:18:57 Heat of formation + Delta-G solvation = -10.469862 kcal Electronic energy + Delta-G solvation = -21207.369909 eV Core-core repulsion = 18117.523701 eV Total energy + Delta-G solvation = -3089.846208 eV No. of doubly occupied orbitals = 49 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 265.146 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.85519 -40.42996 -38.02997 -37.36860 -34.99604 -33.49237 -32.89454 -31.40459 -30.33293 -27.65549 -25.88991 -24.49806 -23.65795 -23.18691 -22.00951 -20.72685 -18.43220 -18.37697 -18.10647 -17.79223 -17.10547 -16.50052 -16.28151 -15.93868 -15.64590 -15.18633 -15.01600 -14.60323 -14.41945 -14.14052 -14.02498 -13.92323 -13.68719 -13.58235 -13.31206 -12.92090 -12.77120 -12.36080 -12.19091 -12.07205 -11.93410 -11.64766 -11.27231 -10.84261 -10.75952 -10.55479 -10.47871 -10.15689 -8.48760 -4.97029 0.26028 0.47176 1.31596 1.66067 1.86219 1.99836 2.84942 3.12725 3.37918 3.48150 3.57174 3.59143 3.83824 3.90397 3.94800 3.96150 4.09908 4.13387 4.20476 4.30536 4.32852 4.34862 4.39544 4.44864 4.53384 4.63433 4.73794 4.75946 4.85002 4.87158 4.94593 5.01147 5.02146 5.09265 5.19173 5.28414 5.35707 5.57466 5.96295 6.39566 6.64895 6.67902 7.16882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.602 5.602 3 C 0.410 3.590 4 N -0.534 5.534 5 C 0.148 3.852 6 C -0.190 4.190 7 C -0.055 4.055 8 O -0.548 6.548 9 Si 0.677 3.323 10 C -0.005 4.005 11 C -0.236 4.236 12 C 0.156 3.844 13 H 0.077 0.923 14 C -0.142 4.142 15 C -0.147 4.147 16 C 0.108 3.892 17 H 0.053 0.947 18 O -0.568 6.568 19 C -0.144 4.144 20 C -0.121 4.121 21 H 0.057 0.943 22 H 0.067 0.933 23 H 0.078 0.922 24 H 0.144 0.856 25 H 0.072 0.928 26 H 0.381 0.619 27 H -0.253 1.253 28 H -0.249 1.249 29 H 0.137 0.863 30 H 0.137 0.863 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.072 0.928 34 H 0.063 0.937 35 H 0.378 0.622 36 H 0.098 0.902 37 H 0.072 0.928 38 H 0.084 0.916 39 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.602 0.235 -1.674 3.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.315 5.315 3 C 0.175 3.825 4 N -0.251 5.251 5 C -0.009 4.009 6 C -0.195 4.195 7 C -0.167 4.167 8 O -0.354 6.354 9 Si 0.578 3.422 10 C -0.030 4.030 11 C -0.260 4.260 12 C 0.052 3.948 13 H 0.095 0.905 14 C -0.180 4.180 15 C -0.185 4.185 16 C 0.049 3.951 17 H 0.071 0.929 18 O -0.374 6.374 19 C -0.181 4.181 20 C -0.159 4.159 21 H 0.075 0.925 22 H 0.085 0.915 23 H 0.096 0.904 24 H 0.161 0.839 25 H 0.090 0.910 26 H 0.229 0.771 27 H -0.178 1.178 28 H -0.174 1.174 29 H 0.155 0.845 30 H 0.154 0.846 31 H 0.097 0.903 32 H 0.096 0.904 33 H 0.091 0.909 34 H 0.082 0.918 35 H 0.226 0.774 36 H 0.116 0.884 37 H 0.091 0.909 38 H 0.103 0.897 39 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 1.031 -0.369 -1.763 2.075 hybrid contribution 1.549 -0.525 0.163 1.643 sum 2.580 -0.895 -1.600 3.165 Atomic orbital electron populations 1.21915 0.79115 1.02547 1.01477 1.46382 1.05474 1.01581 1.78089 1.18268 0.88219 0.85951 0.90013 1.67165 1.40002 0.97420 1.20494 1.22003 0.91137 0.94402 0.93349 1.20012 0.94483 0.95081 1.09947 1.24419 0.98137 1.00716 0.93382 1.86492 1.52750 1.41422 1.54757 0.95381 0.79888 0.85934 0.81000 1.21152 1.00009 0.90570 0.91313 1.21550 0.93764 0.99569 1.11146 1.21071 0.93336 0.82379 0.97964 0.90515 1.22099 0.98322 1.03313 0.94287 1.22168 0.98105 1.00338 0.97892 1.21770 0.91019 0.96444 0.85873 0.92947 1.86513 1.37849 1.96974 1.16034 1.22166 0.98513 1.05397 0.92033 1.21768 0.97953 0.97677 0.98492 0.92527 0.91472 0.90387 0.83893 0.91024 0.77145 1.17826 1.17401 0.84536 0.84552 0.90347 0.90404 0.90935 0.91793 0.77447 0.88394 0.90946 0.89748 0.90133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.10 8.18 59.85 0.49 0.59 16 2 N -0.60 -0.89 2.35 -174.08 -0.41 -1.30 16 3 C 0.41 1.44 7.02 -155.03 -1.09 0.35 16 4 N -0.53 -2.79 9.36 -12.44 -0.12 -2.91 16 5 C 0.15 0.66 9.84 -17.57 -0.17 0.49 16 6 C -0.19 -0.59 5.43 -104.46 -0.57 -1.15 16 7 C -0.05 -0.02 2.83 36.01 0.10 0.08 16 8 O -0.55 -0.24 12.75 -35.23 -0.45 -0.68 16 9 Si 0.68 -0.35 29.82 -169.99 -5.07 -5.42 16 10 C 0.00 -0.01 9.77 -39.32 -0.38 -0.39 16 11 C -0.24 -0.50 7.89 -39.23 -0.31 -0.81 16 12 C 0.16 -0.12 2.58 -67.93 -0.17 -0.29 16 13 H 0.08 -0.11 7.55 -51.93 -0.39 -0.51 16 14 C -0.14 0.10 5.03 -26.73 -0.13 -0.03 16 15 C -0.15 -0.07 5.39 -26.73 -0.14 -0.22 16 16 C 0.11 0.04 3.47 -26.73 -0.09 -0.05 16 17 H 0.05 -0.03 8.14 -51.92 -0.42 -0.45 16 18 O -0.57 -1.06 13.32 -35.23 -0.47 -1.53 16 19 C -0.14 0.01 4.91 -26.73 -0.13 -0.12 16 20 C -0.12 0.21 4.91 -26.73 -0.13 0.08 16 21 H 0.06 0.11 6.71 -51.93 -0.35 -0.24 16 22 H 0.07 0.14 7.75 -51.93 -0.40 -0.26 16 23 H 0.08 -0.07 4.93 -51.93 -0.26 -0.32 16 24 H 0.14 0.53 4.88 -52.48 -0.26 0.27 16 25 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16 26 H 0.38 -1.76 8.74 45.56 0.40 -1.36 16 27 H -0.25 -0.48 7.11 56.52 0.40 -0.08 16 28 H -0.25 -0.72 7.11 56.52 0.40 -0.32 16 29 H 0.14 0.07 8.06 -52.49 -0.42 -0.35 16 30 H 0.14 0.00 5.66 -52.49 -0.30 -0.30 16 31 H 0.08 0.01 5.42 -51.93 -0.28 -0.27 16 32 H 0.08 -0.16 8.14 -51.92 -0.42 -0.59 16 33 H 0.07 0.23 7.60 -51.93 -0.39 -0.17 16 34 H 0.06 0.00 8.14 -51.93 -0.42 -0.42 16 35 H 0.38 -0.67 9.08 45.56 0.41 -0.25 16 36 H 0.10 0.08 3.64 -51.93 -0.19 -0.11 16 37 H 0.07 0.01 8.14 -51.93 -0.42 -0.41 16 38 H 0.08 -0.24 8.14 -51.92 -0.42 -0.66 16 39 H 0.08 -0.18 6.91 -51.93 -0.36 -0.54 16 LS Contribution 294.66 15.07 4.44 4.44 Total: 0.00 -7.39 294.66 -9.32 -16.71 By element: Atomic # 1 Polarization: -3.32 SS G_CDS: -4.51 Total: -7.83 kcal Atomic # 6 Polarization: 1.26 SS G_CDS: -2.74 Total: -1.48 kcal Atomic # 7 Polarization: -3.68 SS G_CDS: -0.53 Total: -4.21 kcal Atomic # 8 Polarization: -1.30 SS G_CDS: -0.92 Total: -2.21 kcal Atomic # 14 Polarization: -0.35 SS G_CDS: -5.07 Total: -5.42 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -7.39 -9.32 -16.71 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_15557738_13915762.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.240 kcal (2) G-P(sol) polarization free energy of solvation -7.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds