Wall clock time and date at job start Mon Mar 8 2021 05:18:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.38995 * 120.00044 * 2 1 4 4 N 1.32398 * 119.70996 * 10.15524 * 3 2 1 5 5 C 1.31971 * 121.62078 * 179.71107 * 4 3 2 6 6 C 1.38018 * 120.85785 * 0.56810 * 5 4 3 7 7 C 1.50701 * 120.33123 * 179.74456 * 6 5 4 8 8 O 1.42906 * 109.46774 * 119.97873 * 7 6 5 9 9 Si 1.86296 * 109.47485 * 359.97438 * 7 6 5 10 10 C 1.38880 * 119.33099 * 359.72282 * 6 5 4 11 11 C 1.38293 * 118.50326 * 359.97438 * 10 6 5 12 12 C 1.46504 * 119.99853 * 179.97438 * 2 1 3 13 13 H 1.08996 * 109.47172 * 119.58340 * 12 2 1 14 14 C 1.52998 * 109.46989 * 239.58675 * 12 2 1 15 15 C 1.52999 * 109.47480 * 60.00043 * 14 12 2 16 16 C 1.52997 * 109.47303 * 59.99733 * 15 14 12 17 17 H 1.09008 * 109.47293 * 59.99817 * 16 15 14 18 18 O 1.42891 * 109.47239 * 180.02562 * 16 15 14 19 19 C 1.53006 * 109.47321 * 300.00524 * 16 15 14 20 20 C 1.52999 * 109.47360 * 59.99511 * 19 16 15 21 21 H 1.09001 * 109.46777 * 275.83832 * 1 2 3 22 22 H 1.09000 * 109.46759 * 35.83639 * 1 2 3 23 23 H 1.09000 * 109.47388 * 155.83472 * 1 2 3 24 24 H 1.08007 * 119.56808 * 180.29246 * 5 4 3 25 25 H 1.08999 * 109.47336 * 239.97230 * 7 6 5 26 26 H 0.96703 * 113.99833 * 179.97438 * 8 7 6 27 27 H 1.48496 * 109.99853 * 298.67959 * 9 7 6 28 28 H 1.48500 * 110.00013 * 59.99924 * 9 7 6 29 29 H 1.07998 * 120.74834 * 179.97438 * 10 6 5 30 30 H 1.08001 * 120.45121 * 179.97438 * 11 10 6 31 31 H 1.09003 * 109.47024 * 299.99455 * 14 12 2 32 32 H 1.09007 * 109.46920 * 180.02562 * 14 12 2 33 33 H 1.08998 * 109.46603 * 299.99989 * 15 14 12 34 34 H 1.08993 * 109.47406 * 180.02562 * 15 14 12 35 35 H 0.96700 * 114.00089 * 299.99897 * 18 16 15 36 36 H 1.08997 * 109.46762 * 299.99580 * 19 16 15 37 37 H 1.08999 * 109.47655 * 179.97438 * 19 16 15 38 38 H 1.09007 * 109.47141 * 60.00249 * 20 19 16 39 39 H 1.08993 * 109.47406 * 180.02562 * 20 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1600 1.2037 0.0000 4 7 1.5078 2.3380 0.2028 5 6 2.1307 3.5014 0.2161 6 6 3.4926 3.5777 0.0060 7 6 4.1909 4.9131 0.0181 8 8 5.1818 4.9231 1.0477 9 14 2.9467 6.2617 0.3403 10 6 4.2131 2.4113 -0.2162 11 6 3.5342 1.2065 -0.2183 12 6 2.1975 -1.2688 0.0006 13 1 2.8185 -1.3302 -0.8931 14 6 3.0849 -1.3448 1.2446 15 6 2.2132 -1.2586 2.4990 16 6 1.2189 -2.4214 2.5100 17 1 1.7639 -3.3655 2.5104 18 8 0.4044 -2.3406 3.6812 19 6 0.3314 -2.3455 1.2659 20 6 1.2032 -2.4316 0.0115 21 1 -0.3633 0.1045 1.0224 22 1 -0.3633 0.8331 -0.6017 23 1 -0.3634 -0.9376 -0.4207 24 1 1.5665 4.4060 0.3893 25 1 4.6683 5.0822 -0.9471 26 1 5.6724 5.7539 1.1134 27 1 1.9287 6.2823 -0.7407 28 1 2.2888 6.0426 1.6534 29 1 5.2795 2.4445 -0.3836 30 1 4.0632 0.2804 -0.3882 31 1 3.7933 -0.5163 1.2367 32 1 3.6302 -2.2886 1.2448 33 1 1.6682 -0.3147 2.4985 34 1 2.8454 -1.3123 3.3852 35 1 0.9014 -2.3824 4.5097 36 1 -0.2135 -1.4016 1.2655 37 1 -0.3766 -3.1742 1.2735 38 1 1.7482 -3.3757 0.0119 39 1 0.5710 -2.3771 -0.8747 There are 49 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 49 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_15557738_13915762.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:18:56 Heat of formation + Delta-G solvation = -10.701495 kcal Electronic energy + Delta-G solvation = -21207.379954 eV Core-core repulsion = 18117.523701 eV Total energy + Delta-G solvation = -3089.856253 eV No. of doubly occupied orbitals = 49 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 265.146 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.95605 -40.49946 -38.07170 -37.40680 -35.06465 -33.63908 -32.95548 -31.46784 -30.34275 -27.74197 -25.99129 -24.60270 -23.66589 -23.23884 -22.08830 -20.75536 -18.46400 -18.43978 -18.17559 -17.89579 -17.15139 -16.55233 -16.37252 -16.04034 -15.67133 -15.23346 -15.10821 -14.67768 -14.52459 -14.22173 -14.10499 -14.00097 -13.75351 -13.64265 -13.29233 -12.94367 -12.73789 -12.46420 -12.21181 -12.10150 -12.00003 -11.67030 -11.27759 -10.95328 -10.85919 -10.67770 -10.63471 -10.19035 -8.61231 -4.98730 0.05330 0.29933 1.30869 1.61527 1.80049 1.96682 2.67159 3.18154 3.25633 3.47824 3.54108 3.62596 3.74583 3.88570 3.92190 3.98188 4.04426 4.12804 4.21869 4.26830 4.30067 4.38242 4.40824 4.43045 4.50813 4.60042 4.65922 4.78825 4.82181 4.84204 4.95207 4.97518 5.05744 5.09220 5.17310 5.21900 5.28726 5.45312 5.90629 6.25249 6.76858 6.93268 6.98815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.601 5.601 3 C 0.394 3.606 4 N -0.566 5.566 5 C 0.122 3.878 6 C -0.201 4.201 7 C -0.056 4.056 8 O -0.564 6.564 9 Si 0.767 3.233 10 C -0.011 4.011 11 C -0.231 4.231 12 C 0.152 3.848 13 H 0.093 0.907 14 C -0.138 4.138 15 C -0.141 4.141 16 C 0.106 3.894 17 H 0.068 0.932 18 O -0.592 6.592 19 C -0.146 4.146 20 C -0.114 4.114 21 H 0.041 0.959 22 H 0.050 0.950 23 H 0.099 0.901 24 H 0.136 0.864 25 H 0.097 0.903 26 H 0.403 0.597 27 H -0.290 1.290 28 H -0.303 1.303 29 H 0.158 0.842 30 H 0.160 0.840 31 H 0.070 0.930 32 H 0.101 0.899 33 H 0.038 0.962 34 H 0.067 0.933 35 H 0.391 0.609 36 H 0.083 0.917 37 H 0.070 0.930 38 H 0.104 0.896 39 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.467 -0.880 -2.489 6.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.315 5.315 3 C 0.159 3.841 4 N -0.284 5.284 5 C -0.035 4.035 6 C -0.207 4.207 7 C -0.168 4.168 8 O -0.374 6.374 9 Si 0.675 3.325 10 C -0.036 4.036 11 C -0.255 4.255 12 C 0.049 3.951 13 H 0.111 0.889 14 C -0.176 4.176 15 C -0.179 4.179 16 C 0.048 3.952 17 H 0.086 0.914 18 O -0.400 6.400 19 C -0.183 4.183 20 C -0.152 4.152 21 H 0.059 0.941 22 H 0.069 0.931 23 H 0.117 0.883 24 H 0.153 0.847 25 H 0.115 0.885 26 H 0.254 0.746 27 H -0.218 1.218 28 H -0.232 1.232 29 H 0.176 0.824 30 H 0.177 0.823 31 H 0.089 0.911 32 H 0.119 0.881 33 H 0.057 0.943 34 H 0.085 0.915 35 H 0.240 0.760 36 H 0.101 0.899 37 H 0.089 0.911 38 H 0.123 0.877 39 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 2.938 -1.469 -2.578 4.176 hybrid contribution 0.911 -0.204 0.491 1.055 sum 3.849 -1.674 -2.087 4.687 Atomic orbital electron populations 1.21858 0.79393 1.02929 1.00343 1.46569 1.05513 1.01825 1.77555 1.18586 0.89137 0.86060 0.90356 1.67091 1.41253 0.98312 1.21707 1.22085 0.92171 0.94261 0.94942 1.20346 0.94079 0.96926 1.09300 1.24461 0.98498 0.99091 0.94700 1.86435 1.52840 1.43412 1.54735 0.94588 0.77779 0.84142 0.76001 1.21465 1.00998 0.90260 0.90882 1.21814 0.93155 1.00587 1.09956 1.21305 0.93657 0.81558 0.98559 0.88950 1.22099 0.97945 1.04163 0.93430 1.22089 0.98095 0.98788 0.98959 1.21878 0.90958 0.96853 0.85530 0.91377 1.86480 1.39213 1.97056 1.17236 1.22181 0.98781 1.04469 0.92910 1.21764 0.97692 0.98031 0.97686 0.94125 0.93080 0.88261 0.84691 0.88479 0.74555 1.21792 1.23177 0.82418 0.82252 0.91104 0.88104 0.94264 0.91472 0.75992 0.89921 0.91100 0.87728 0.89400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.37 8.18 127.77 1.04 1.42 16 2 N -0.60 -2.21 2.35 -704.66 -1.66 -3.87 16 3 C 0.39 3.23 7.02 133.07 0.93 4.16 16 4 N -0.57 -7.37 9.36 -193.27 -1.81 -9.18 16 5 C 0.12 1.38 9.84 84.62 0.83 2.21 16 6 C -0.20 -1.38 5.43 -19.76 -0.11 -1.49 16 7 C -0.06 -0.02 2.83 71.24 0.20 0.18 16 8 O -0.56 0.04 12.75 -148.98 -1.90 -1.86 16 9 Si 0.77 0.07 29.82 68.60 2.05 2.11 16 10 C -0.01 -0.04 9.77 22.44 0.22 0.17 16 11 C -0.23 -0.92 7.89 22.50 0.18 -0.75 16 12 C 0.15 -0.38 2.58 44.99 0.12 -0.27 16 13 H 0.09 -0.48 7.55 -2.39 -0.02 -0.49 16 14 C -0.14 0.35 5.03 30.59 0.15 0.50 16 15 C -0.14 -0.19 5.39 30.59 0.16 -0.03 16 16 C 0.11 0.07 3.47 30.60 0.11 0.17 16 17 H 0.07 -0.16 8.14 -2.38 -0.02 -0.18 16 18 O -0.59 -2.64 13.32 -148.98 -1.98 -4.62 16 19 C -0.15 0.03 4.91 30.60 0.15 0.18 16 20 C -0.11 0.56 4.91 30.60 0.15 0.72 16 21 H 0.04 0.28 6.71 -2.39 -0.02 0.26 16 22 H 0.05 0.35 7.75 -2.39 -0.02 0.33 16 23 H 0.10 -0.11 4.93 -2.39 -0.01 -0.12 16 24 H 0.14 1.47 4.88 -2.91 -0.01 1.46 16 25 H 0.10 -0.43 7.96 -2.39 -0.02 -0.45 16 26 H 0.40 -4.32 8.74 -74.06 -0.65 -4.97 16 27 H -0.29 -1.71 7.11 99.48 0.71 -1.01 16 28 H -0.30 -2.68 7.11 99.48 0.71 -1.97 16 29 H 0.16 -0.09 8.06 -2.91 -0.02 -0.12 16 30 H 0.16 -0.24 5.66 -2.91 -0.02 -0.26 16 31 H 0.07 -0.05 5.42 -2.39 -0.01 -0.06 16 32 H 0.10 -0.68 8.14 -2.38 -0.02 -0.70 16 33 H 0.04 0.33 7.60 -2.39 -0.02 0.31 16 34 H 0.07 0.02 8.14 -2.39 -0.02 0.00 16 35 H 0.39 -1.11 9.08 -74.06 -0.67 -1.78 16 36 H 0.08 0.25 3.64 -2.39 -0.01 0.24 16 37 H 0.07 0.01 8.14 -2.39 -0.02 -0.01 16 38 H 0.10 -0.88 8.14 -2.38 -0.02 -0.90 16 39 H 0.09 -0.53 6.91 -2.39 -0.02 -0.55 16 Total: 0.00 -19.85 294.66 -1.36 -21.22 By element: Atomic # 1 Polarization: -10.78 SS G_CDS: -0.20 Total: -10.98 kcal Atomic # 6 Polarization: 3.04 SS G_CDS: 4.14 Total: 7.18 kcal Atomic # 7 Polarization: -9.58 SS G_CDS: -3.47 Total: -13.05 kcal Atomic # 8 Polarization: -2.60 SS G_CDS: -3.88 Total: -6.48 kcal Atomic # 14 Polarization: 0.07 SS G_CDS: 2.05 Total: 2.11 kcal Total: -19.85 -1.36 -21.22 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_15557738_13915762.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.514 kcal (2) G-P(sol) polarization free energy of solvation -19.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds