Wall clock time and date at job start Mon Mar 8 2021 05:18:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.38607 * 119.99697 * 2 1 4 4 N 1.29694 * 124.94717 * 179.69276 * 3 2 1 5 5 C 1.32119 * 116.86566 * 179.81402 * 4 3 2 6 6 C 1.33327 * 114.58022 * 0.46898 * 5 4 3 7 7 C 1.50693 * 125.95251 * 179.75121 * 6 5 4 8 8 O 1.42900 * 109.47322 * 245.00302 * 7 6 5 9 9 Si 1.86302 * 109.47205 * 5.00648 * 7 6 5 10 10 S 1.70967 * 124.95414 * 359.97438 * 3 2 1 11 11 C 1.46497 * 120.00157 * 179.97438 * 2 1 3 12 12 H 1.08997 * 109.46781 * 118.86731 * 11 2 1 13 13 C 1.52992 * 109.47546 * 238.87152 * 11 2 1 14 14 C 1.52996 * 109.47291 * 59.99833 * 13 11 2 15 15 C 1.53002 * 109.47232 * 60.00210 * 14 13 11 16 16 H 1.09003 * 109.46675 * 59.99988 * 15 14 13 17 17 O 1.42895 * 109.47067 * 180.02562 * 15 14 13 18 18 C 1.52998 * 109.47064 * 300.00262 * 15 14 13 19 19 C 1.53004 * 109.47454 * 59.99592 * 18 15 14 20 20 H 1.09002 * 109.47547 * 276.01837 * 1 2 3 21 21 H 1.09004 * 109.46863 * 36.01845 * 1 2 3 22 22 H 1.08997 * 109.46823 * 156.01745 * 1 2 3 23 23 H 1.07997 * 122.71323 * 180.23195 * 5 4 3 24 24 H 1.09003 * 109.47030 * 125.00638 * 7 6 5 25 25 H 0.96700 * 113.99643 * 60.00372 * 8 7 6 26 26 H 1.48503 * 110.00076 * 179.97438 * 9 7 6 27 27 H 1.48502 * 109.99984 * 301.31510 * 9 7 6 28 28 H 1.09003 * 109.47423 * 180.02562 * 13 11 2 29 29 H 1.09007 * 109.47274 * 300.00035 * 13 11 2 30 30 H 1.09005 * 109.47032 * 180.02562 * 14 13 11 31 31 H 1.09000 * 109.47176 * 299.99824 * 14 13 11 32 32 H 0.96706 * 113.99530 * 179.97438 * 17 15 14 33 33 H 1.08998 * 109.47357 * 180.02562 * 18 15 14 34 34 H 1.09000 * 109.46594 * 299.99927 * 18 15 14 35 35 H 1.08988 * 109.47243 * 180.02562 * 19 18 15 36 36 H 1.09003 * 109.47070 * 59.99794 * 19 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1580 1.2004 0.0000 4 7 3.4501 1.3123 0.0057 5 6 3.9432 2.5380 0.0009 6 6 3.0254 3.5051 0.0006 7 6 3.3012 4.9866 0.0009 8 8 2.8281 5.5589 1.2218 9 14 5.1351 5.2769 -0.1515 10 16 1.4341 2.7493 -0.0006 11 6 2.1975 -1.2687 0.0006 12 1 2.8088 -1.3356 -0.8994 13 6 3.0983 -1.3370 1.2353 14 6 2.2403 -1.2431 2.4985 15 6 1.2462 -2.4058 2.5275 16 1 1.7913 -3.3498 2.5278 17 8 0.4444 -2.3177 3.7070 18 6 0.3454 -2.3376 1.2927 19 6 1.2035 -2.4315 0.0294 20 1 -0.3634 0.1077 1.0220 21 1 -0.3633 0.8312 -0.6043 22 1 -0.3633 -0.9389 -0.4177 23 1 5.0041 2.7403 0.0012 24 1 2.7885 5.4518 -0.8411 25 1 3.2420 5.1915 2.0147 26 1 5.4202 6.7343 -0.1530 27 1 5.8485 4.6206 0.9735 28 1 3.6437 -2.2808 1.2355 29 1 3.8065 -0.5086 1.2147 30 1 2.8821 -1.2913 3.3782 31 1 1.6953 -0.2991 2.4982 32 1 -0.2101 -3.0246 3.7913 33 1 -0.3631 -3.1656 1.3135 34 1 -0.1996 -1.3936 1.2924 35 1 0.5618 -2.3824 -0.8501 36 1 1.7486 -3.3754 0.0298 There are 47 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 47 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_15557738_15704118.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:18:59 Heat of formation + Delta-G solvation = -4.169841 kcal Electronic energy + Delta-G solvation = -19751.066674 eV Core-core repulsion = 16750.645902 eV Total energy + Delta-G solvation = -3000.420773 eV No. of doubly occupied orbitals = 47 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 271.103 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.46097 -40.18828 -38.14895 -37.51850 -34.99148 -32.68958 -31.37260 -30.45714 -27.98478 -25.82770 -24.70810 -23.80144 -22.71094 -21.69478 -19.72207 -19.57894 -18.23653 -17.77678 -17.32004 -17.18473 -16.46897 -16.13679 -15.90389 -15.61841 -15.36792 -14.94296 -14.87512 -14.51755 -13.97850 -13.73783 -13.68010 -13.36162 -13.09383 -12.86339 -12.70189 -12.38113 -12.26810 -12.02564 -11.94185 -11.77004 -11.07608 -10.99658 -10.71343 -10.61402 -10.41763 -10.14004 -8.59378 -4.91790 -0.06717 0.08878 0.73122 1.45094 1.61934 1.83174 1.92395 1.97582 3.21480 3.36863 3.52431 3.60243 3.71445 3.87206 4.00012 4.09411 4.12506 4.20504 4.31321 4.37531 4.39001 4.43401 4.46450 4.59754 4.65562 4.69721 4.88730 4.98821 5.02545 5.07738 5.11230 5.17564 5.30222 5.32152 5.74491 6.01737 6.42063 6.85512 6.91305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.570 5.570 3 C 0.313 3.687 4 N -0.568 5.568 5 C 0.089 3.911 6 C -0.309 4.309 7 C -0.041 4.041 8 O -0.550 6.550 9 Si 0.786 3.214 10 S 0.110 5.890 11 C 0.164 3.836 12 H 0.075 0.925 13 C -0.130 4.130 14 C -0.103 4.103 15 C 0.105 3.895 16 H 0.061 0.939 17 O -0.592 6.592 18 C -0.175 4.175 19 C -0.119 4.119 20 H 0.065 0.935 21 H 0.068 0.932 22 H 0.117 0.883 23 H 0.188 0.812 24 H 0.122 0.878 25 H 0.385 0.615 26 H -0.294 1.294 27 H -0.280 1.280 28 H 0.084 0.916 29 H 0.076 0.924 30 H 0.049 0.951 31 H 0.045 0.955 32 H 0.393 0.607 33 H 0.085 0.915 34 H 0.090 0.910 35 H 0.091 0.909 36 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.828 -4.834 -3.557 6.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.289 5.289 3 C -0.056 4.056 4 N -0.294 5.294 5 C -0.062 4.062 6 C -0.432 4.432 7 C -0.151 4.151 8 O -0.358 6.358 9 Si 0.689 3.311 10 S 0.360 5.640 11 C 0.060 3.940 12 H 0.093 0.907 13 C -0.168 4.168 14 C -0.141 4.141 15 C 0.047 3.953 16 H 0.079 0.921 17 O -0.400 6.400 18 C -0.212 4.212 19 C -0.157 4.157 20 H 0.083 0.917 21 H 0.086 0.914 22 H 0.135 0.865 23 H 0.204 0.796 24 H 0.139 0.861 25 H 0.235 0.765 26 H -0.222 1.222 27 H -0.206 1.206 28 H 0.102 0.898 29 H 0.094 0.906 30 H 0.068 0.932 31 H 0.063 0.937 32 H 0.243 0.757 33 H 0.104 0.896 34 H 0.108 0.892 35 H 0.109 0.891 36 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -1.992 -3.942 -3.504 5.638 hybrid contribution 0.225 -0.233 1.289 1.329 sum -1.766 -4.175 -2.215 5.046 Atomic orbital electron populations 1.22397 0.76890 1.05296 1.02183 1.46241 1.05474 1.00732 1.76457 1.23895 0.91539 0.92567 0.97605 1.66489 1.09359 1.25325 1.28239 1.21616 1.01248 0.85272 0.98110 1.25916 0.94313 1.01129 1.21889 1.24644 1.14048 0.87014 0.89396 1.86568 1.67413 1.65502 1.16319 0.93843 0.70836 0.78338 0.88098 1.84052 1.09903 0.96646 1.73363 1.21126 0.93246 0.81612 0.98056 0.90710 1.21900 0.98212 1.03695 0.93041 1.21318 0.97068 0.97801 0.97924 1.21835 0.91314 0.97783 0.84388 0.92115 1.86500 1.53715 1.55872 1.43953 1.22874 0.99010 1.05215 0.94080 1.21826 0.97797 0.97529 0.98519 0.91722 0.91372 0.86535 0.79570 0.86059 0.76545 1.22161 1.20603 0.89752 0.90572 0.93185 0.93662 0.75684 0.89608 0.89159 0.89071 0.88541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 -0.33 8.19 127.77 1.05 0.72 16 2 N -0.57 -0.11 2.35 -711.58 -1.67 -1.78 16 3 C 0.31 1.43 7.40 179.32 1.33 2.76 16 4 N -0.57 -3.68 8.29 -202.03 -1.67 -5.36 16 5 C 0.09 0.34 10.07 83.54 0.84 1.18 16 6 C -0.31 -1.04 5.92 24.57 0.15 -0.89 16 7 C -0.04 -0.06 3.08 71.23 0.22 0.16 16 8 O -0.55 -2.61 12.88 -148.98 -1.92 -4.53 16 9 Si 0.79 -0.97 30.50 68.60 2.09 1.13 16 10 S 0.11 0.42 21.81 -56.49 -1.23 -0.81 16 11 C 0.16 -0.26 3.09 44.99 0.14 -0.12 16 12 H 0.07 -0.02 8.14 -2.39 -0.02 -0.04 16 13 C -0.13 -0.14 5.25 30.59 0.16 0.02 16 14 C -0.10 -0.34 5.42 30.59 0.17 -0.18 16 15 C 0.11 -0.09 3.47 30.59 0.11 0.01 16 16 H 0.06 -0.15 8.14 -2.39 -0.02 -0.17 16 17 O -0.59 -1.20 13.32 -148.98 -1.98 -3.18 16 18 C -0.17 1.02 4.89 30.59 0.15 1.17 16 19 C -0.12 0.83 4.91 30.60 0.15 0.98 16 20 H 0.06 -0.24 6.69 -2.39 -0.02 -0.25 16 21 H 0.07 -0.31 7.30 -2.38 -0.02 -0.33 16 22 H 0.12 -1.03 4.97 -2.39 -0.01 -1.05 16 23 H 0.19 -0.09 5.87 -2.91 -0.02 -0.11 16 24 H 0.12 0.02 7.96 -2.39 -0.02 0.00 16 25 H 0.39 -0.14 8.70 -74.06 -0.64 -0.78 16 26 H -0.29 -1.64 7.11 99.48 0.71 -0.93 16 27 H -0.28 -0.73 7.11 99.48 0.71 -0.02 16 28 H 0.08 -0.12 8.14 -2.39 -0.02 -0.14 16 29 H 0.08 0.44 6.14 -2.38 -0.01 0.43 16 30 H 0.05 0.31 8.14 -2.38 -0.02 0.29 16 31 H 0.04 0.33 7.60 -2.39 -0.02 0.31 16 32 H 0.39 -2.57 9.08 -74.05 -0.67 -3.24 16 33 H 0.09 -0.75 8.14 -2.39 -0.02 -0.77 16 34 H 0.09 -0.43 3.68 -2.39 -0.01 -0.44 16 35 H 0.09 -0.86 6.88 -2.39 -0.02 -0.87 16 36 H 0.10 -0.83 8.14 -2.39 -0.02 -0.85 16 Total: 0.00 -15.60 288.75 -2.10 -17.70 By element: Atomic # 1 Polarization: -8.81 SS G_CDS: -0.16 Total: -8.96 kcal Atomic # 6 Polarization: 1.35 SS G_CDS: 4.45 Total: 5.80 kcal Atomic # 7 Polarization: -3.79 SS G_CDS: -3.34 Total: -7.14 kcal Atomic # 8 Polarization: -3.81 SS G_CDS: -3.90 Total: -7.71 kcal Atomic # 14 Polarization: -0.97 SS G_CDS: 2.09 Total: 1.13 kcal Atomic # 16 Polarization: 0.42 SS G_CDS: -1.23 Total: -0.81 kcal Total: -15.60 -2.10 -17.70 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_15557738_15704118.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.528 kcal (2) G-P(sol) polarization free energy of solvation -15.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds