Wall clock time and date at job start Mon Mar 8 2021 05:19:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33336 * 125.95015 * 2 1 4 4 C 1.50693 * 122.71002 * 0.02562 * 3 2 1 5 5 O 1.42902 * 109.47480 * 29.99656 * 4 3 2 6 6 Si 1.86301 * 109.47190 * 149.99534 * 4 3 2 7 7 N 1.32118 * 114.57720 * 179.75612 * 3 2 1 8 8 C 1.29686 * 116.86517 * 0.47138 * 7 3 2 9 9 N 1.38612 * 124.94894 * 179.81699 * 8 7 3 10 10 C 1.46501 * 120.00087 * 359.71840 * 9 8 7 11 11 C 1.46501 * 120.00237 * 179.72676 * 9 8 7 12 12 H 1.08999 * 109.46540 * 299.75290 * 11 9 8 13 13 C 1.52997 * 109.47503 * 59.74913 * 11 9 8 14 14 C 1.53000 * 109.46833 * 60.00404 * 13 11 9 15 15 C 1.52996 * 109.47338 * 60.00156 * 14 13 11 16 16 H 1.08998 * 109.47191 * 60.00112 * 15 14 13 17 17 O 1.42902 * 109.47051 * 180.02562 * 15 14 13 18 18 C 1.52997 * 109.47031 * 299.99723 * 15 14 13 19 19 C 1.53001 * 109.47208 * 179.75460 * 11 9 8 20 20 S 1.70967 * 110.10523 * 359.55384 * 8 7 3 21 21 H 1.09001 * 109.46889 * 180.02562 * 1 2 3 22 22 H 1.08998 * 109.46974 * 300.01970 * 1 2 3 23 23 H 1.09000 * 109.47198 * 60.02180 * 1 2 3 24 24 H 1.09003 * 109.47120 * 269.99935 * 4 3 2 25 25 H 0.96705 * 113.99622 * 59.99964 * 5 4 3 26 26 H 1.48495 * 110.00038 * 179.97438 * 6 4 3 27 27 H 1.48492 * 110.00043 * 301.32200 * 6 4 3 28 28 H 1.08994 * 109.47287 * 275.71563 * 10 9 8 29 29 H 1.09003 * 109.46793 * 35.70841 * 10 9 8 30 30 H 1.08995 * 109.46916 * 155.71055 * 10 9 8 31 31 H 1.08998 * 109.47450 * 180.02562 * 13 11 9 32 32 H 1.08998 * 109.47014 * 300.00533 * 13 11 9 33 33 H 1.09004 * 109.47113 * 180.02562 * 14 13 11 34 34 H 1.09008 * 109.47110 * 299.99573 * 14 13 11 35 35 H 0.96696 * 113.99856 * 299.99660 * 17 15 14 36 36 H 1.08998 * 109.47450 * 300.00230 * 18 15 14 37 37 H 1.09003 * 109.47439 * 179.97438 * 18 15 14 38 38 H 1.08999 * 109.46983 * 59.99686 * 19 11 9 39 39 H 1.08999 * 109.46686 * 179.97438 * 19 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2898 1.0794 0.0000 4 6 1.7414 2.4830 0.0006 5 8 0.4815 2.5020 0.6746 6 14 2.9325 3.6147 0.8788 7 7 3.5850 0.8189 0.0051 8 6 3.9315 -0.4309 -0.0001 9 7 5.2385 -0.8925 0.0003 10 6 6.3517 0.0598 0.0008 11 6 5.5066 -2.3328 0.0001 12 1 5.0713 -2.7834 0.8921 13 6 4.8861 -2.9670 -1.2463 14 6 5.4970 -2.3344 -2.4983 15 6 7.0084 -2.5718 -2.5040 16 1 7.2079 -3.6434 -2.5041 17 8 7.5791 -1.9804 -3.6730 18 6 7.6290 -1.9376 -1.2576 19 6 7.0181 -2.5702 -0.0055 20 16 2.5413 -1.4261 -0.0002 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5141 0.8898 23 1 -0.3633 0.5135 -0.8902 24 1 1.6089 2.8217 -1.0270 25 1 0.5241 2.2119 1.5961 26 1 2.4035 5.0022 0.8856 27 1 3.1464 3.1452 2.2712 28 1 6.5617 0.3738 -1.0216 29 1 6.0851 0.9300 0.6006 30 1 7.2365 -0.4159 0.4238 31 1 5.0852 -4.0387 -1.2462 32 1 3.8093 -2.7979 -1.2422 33 1 5.0546 -2.7859 -3.3863 34 1 5.2974 -1.2628 -2.4982 35 1 7.2315 -2.3350 -4.5028 36 1 7.4295 -0.8660 -1.2574 37 1 8.7057 -2.1071 -1.2613 38 1 7.4601 -2.1184 0.8825 39 1 7.2175 -3.6418 -0.0052 There are 50 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 50 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_15557738_15704122.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:19:02 Heat of formation + Delta-G solvation = -9.820895 kcal Electronic energy + Delta-G solvation = -21828.122818 eV Core-core repulsion = 18671.919378 eV Total energy + Delta-G solvation = -3156.203440 eV No. of doubly occupied orbitals = 50 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 285.119 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.49510 -40.60903 -38.11762 -37.36800 -34.93443 -32.99765 -32.36312 -30.49364 -29.39180 -27.43885 -25.55701 -24.33040 -23.92880 -22.42827 -21.10910 -20.13029 -18.84560 -18.27526 -17.91859 -17.35575 -17.20162 -16.53422 -16.08989 -15.73669 -15.61565 -15.46877 -14.81734 -14.69422 -14.21029 -14.05226 -13.96716 -13.76133 -13.57633 -13.48070 -13.40684 -13.03748 -12.93040 -12.62115 -12.38961 -12.19398 -12.08323 -11.76731 -11.70442 -11.32916 -10.85770 -10.67801 -10.50287 -10.31056 -9.87187 -8.41811 -4.64682 0.08737 0.21887 0.85224 1.42934 1.73240 1.85495 2.00916 2.15733 3.06292 3.23399 3.37835 3.47333 3.58894 3.80601 3.87077 3.99117 4.09731 4.15236 4.23123 4.25553 4.28817 4.39213 4.43003 4.55018 4.61590 4.65597 4.71815 4.78588 4.82278 4.86505 4.91378 4.94850 4.99846 5.11562 5.13189 5.22061 5.33399 5.73044 6.04382 6.38687 6.63574 7.01544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C -0.251 4.251 3 C 0.068 3.932 4 C -0.041 4.041 5 O -0.526 6.526 6 Si 0.721 3.279 7 N -0.536 5.536 8 C 0.323 3.677 9 N -0.574 5.574 10 C 0.091 3.909 11 C 0.149 3.851 12 H 0.080 0.920 13 C -0.143 4.143 14 C -0.147 4.147 15 C 0.108 3.892 16 H 0.053 0.947 17 O -0.567 6.567 18 C -0.145 4.145 19 C -0.120 4.120 20 S 0.097 5.903 21 H 0.056 0.944 22 H 0.078 0.922 23 H 0.074 0.926 24 H 0.123 0.877 25 H 0.375 0.625 26 H -0.261 1.261 27 H -0.268 1.268 28 H 0.062 0.938 29 H 0.074 0.926 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.076 0.924 33 H 0.066 0.934 34 H 0.073 0.927 35 H 0.379 0.621 36 H 0.099 0.901 37 H 0.074 0.926 38 H 0.083 0.917 39 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.210 -4.055 -0.253 4.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.374 4.374 3 C -0.062 4.062 4 C -0.154 4.154 5 O -0.331 6.331 6 Si 0.622 3.378 7 N -0.263 5.263 8 C -0.046 4.046 9 N -0.294 5.294 10 C -0.053 4.053 11 C 0.046 3.954 12 H 0.098 0.902 13 C -0.182 4.182 14 C -0.185 4.185 15 C 0.049 3.951 16 H 0.071 0.929 17 O -0.373 6.373 18 C -0.182 4.182 19 C -0.157 4.157 20 S 0.349 5.651 21 H 0.075 0.925 22 H 0.096 0.904 23 H 0.093 0.907 24 H 0.140 0.860 25 H 0.223 0.777 26 H -0.187 1.187 27 H -0.193 1.193 28 H 0.080 0.920 29 H 0.093 0.907 30 H 0.101 0.899 31 H 0.102 0.898 32 H 0.095 0.905 33 H 0.085 0.915 34 H 0.092 0.908 35 H 0.226 0.774 36 H 0.117 0.883 37 H 0.093 0.907 38 H 0.101 0.899 39 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 2.875 -3.713 0.318 4.707 hybrid contribution -1.424 -0.282 0.147 1.459 sum 1.451 -3.995 0.465 4.276 Atomic orbital electron populations 1.20115 0.86660 1.01495 1.03480 1.25219 1.01300 0.93405 1.17438 1.20045 0.86951 0.97012 1.02198 1.24451 0.91828 0.95517 1.03581 1.86622 1.28694 1.89033 1.28788 0.93643 0.86252 0.76368 0.81577 1.65714 1.16770 1.16337 1.27452 1.23167 0.91120 0.91427 0.98929 1.45934 1.00089 1.05485 1.77877 1.22067 0.88456 0.92768 1.01984 1.21265 0.97115 0.78720 0.98274 0.90226 1.22107 1.00956 1.00775 0.94367 1.22182 0.96096 1.02485 0.97754 1.21757 0.91340 0.96026 0.85980 0.92875 1.86518 1.67690 1.67030 1.16036 1.22182 1.00633 1.03462 0.91901 1.21757 0.92622 1.02586 0.98756 1.83984 0.96476 1.10503 1.74180 0.92455 0.90371 0.90693 0.85962 0.77728 1.18691 1.19261 0.91962 0.90703 0.89938 0.89766 0.90541 0.91508 0.90787 0.77382 0.88266 0.90745 0.89885 0.89490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.04 8.91 36.01 0.32 0.28 16 2 C -0.25 -0.55 6.50 -36.02 -0.23 -0.78 16 3 C 0.07 0.18 5.92 -84.19 -0.50 -0.32 16 4 C -0.04 -0.07 2.94 36.00 0.11 0.04 16 5 O -0.53 -0.83 10.17 -35.23 -0.36 -1.19 16 6 Si 0.72 1.16 32.08 -169.99 -5.45 -4.30 16 7 N -0.54 -1.58 8.25 -11.36 -0.09 -1.68 16 8 C 0.32 0.60 7.45 -87.68 -0.65 -0.05 16 9 N -0.57 0.11 2.34 -176.27 -0.41 -0.31 16 10 C 0.09 -0.10 8.37 59.85 0.50 0.40 16 11 C 0.15 -0.29 2.87 -67.93 -0.19 -0.48 16 12 H 0.08 -0.17 8.14 -51.93 -0.42 -0.59 16 13 C -0.14 0.27 5.22 -26.73 -0.14 0.13 16 14 C -0.15 0.18 5.39 -26.73 -0.14 0.03 16 15 C 0.11 -0.13 3.47 -26.73 -0.09 -0.22 16 16 H 0.05 -0.10 8.14 -51.93 -0.42 -0.52 16 17 O -0.57 -0.21 13.32 -35.23 -0.47 -0.68 16 18 C -0.14 0.25 4.90 -26.73 -0.13 0.12 16 19 C -0.12 0.38 4.91 -26.73 -0.13 0.25 16 20 S 0.10 0.11 19.65 -107.50 -2.11 -2.00 16 21 H 0.06 0.00 8.14 -51.93 -0.42 -0.42 16 22 H 0.08 0.00 6.39 -51.93 -0.33 -0.33 16 23 H 0.07 0.08 8.14 -51.93 -0.42 -0.34 16 24 H 0.12 0.13 7.96 -51.93 -0.41 -0.29 16 25 H 0.37 -0.29 8.13 45.56 0.37 0.08 16 26 H -0.26 -1.01 7.11 56.52 0.40 -0.61 16 27 H -0.27 -1.15 7.11 56.52 0.40 -0.75 16 28 H 0.06 -0.04 6.71 -51.93 -0.35 -0.39 16 29 H 0.07 -0.02 7.78 -51.93 -0.40 -0.43 16 30 H 0.08 -0.23 4.93 -51.93 -0.26 -0.49 16 31 H 0.08 -0.27 8.14 -51.93 -0.42 -0.69 16 32 H 0.08 -0.07 5.00 -40.17 -0.20 -0.28 16 33 H 0.07 -0.11 8.14 -51.93 -0.42 -0.53 16 34 H 0.07 0.07 7.61 -51.92 -0.39 -0.32 16 35 H 0.38 -1.19 9.08 45.56 0.41 -0.78 16 36 H 0.10 -0.12 3.63 -51.93 -0.19 -0.30 16 37 H 0.07 -0.10 8.14 -51.93 -0.42 -0.53 16 38 H 0.08 -0.31 6.92 -51.93 -0.36 -0.67 16 39 H 0.09 -0.35 8.14 -51.93 -0.42 -0.78 16 LS Contribution 306.16 15.07 4.61 4.61 Total: 0.00 -5.82 306.16 -10.27 -16.09 By element: Atomic # 1 Polarization: -5.26 SS G_CDS: -4.69 Total: -9.95 kcal Atomic # 6 Polarization: 0.69 SS G_CDS: -1.29 Total: -0.60 kcal Atomic # 7 Polarization: -1.48 SS G_CDS: -0.51 Total: -1.98 kcal Atomic # 8 Polarization: -1.03 SS G_CDS: -0.83 Total: -1.86 kcal Atomic # 14 Polarization: 1.16 SS G_CDS: -5.45 Total: -4.30 kcal Atomic # 16 Polarization: 0.11 SS G_CDS: -2.11 Total: -2.00 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -5.82 -10.27 -16.09 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_15557738_15704122.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.267 kcal (2) G-P(sol) polarization free energy of solvation -5.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds