Wall clock time and date at job start Mon Mar 8 2021 05:19:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33336 * 125.95015 * 2 1 4 4 C 1.50693 * 122.71002 * 0.02562 * 3 2 1 5 5 O 1.42902 * 109.47480 * 29.99656 * 4 3 2 6 6 Si 1.86301 * 109.47190 * 149.99534 * 4 3 2 7 7 N 1.32118 * 114.57720 * 179.75612 * 3 2 1 8 8 C 1.29686 * 116.86517 * 0.47138 * 7 3 2 9 9 N 1.38612 * 124.94894 * 179.81699 * 8 7 3 10 10 C 1.46501 * 120.00087 * 359.71840 * 9 8 7 11 11 C 1.46501 * 120.00237 * 179.72676 * 9 8 7 12 12 H 1.08999 * 109.46540 * 299.75290 * 11 9 8 13 13 C 1.52997 * 109.47503 * 59.74913 * 11 9 8 14 14 C 1.53000 * 109.46833 * 60.00404 * 13 11 9 15 15 C 1.52996 * 109.47338 * 60.00156 * 14 13 11 16 16 H 1.08998 * 109.47191 * 60.00112 * 15 14 13 17 17 O 1.42902 * 109.47051 * 180.02562 * 15 14 13 18 18 C 1.52997 * 109.47031 * 299.99723 * 15 14 13 19 19 C 1.53001 * 109.47208 * 179.75460 * 11 9 8 20 20 S 1.70967 * 110.10523 * 359.55384 * 8 7 3 21 21 H 1.09001 * 109.46889 * 180.02562 * 1 2 3 22 22 H 1.08998 * 109.46974 * 300.01970 * 1 2 3 23 23 H 1.09000 * 109.47198 * 60.02180 * 1 2 3 24 24 H 1.09003 * 109.47120 * 269.99935 * 4 3 2 25 25 H 0.96705 * 113.99622 * 59.99964 * 5 4 3 26 26 H 1.48495 * 110.00038 * 179.97438 * 6 4 3 27 27 H 1.48492 * 110.00043 * 301.32200 * 6 4 3 28 28 H 1.08994 * 109.47287 * 275.71563 * 10 9 8 29 29 H 1.09003 * 109.46793 * 35.70841 * 10 9 8 30 30 H 1.08995 * 109.46916 * 155.71055 * 10 9 8 31 31 H 1.08998 * 109.47450 * 180.02562 * 13 11 9 32 32 H 1.08998 * 109.47014 * 300.00533 * 13 11 9 33 33 H 1.09004 * 109.47113 * 180.02562 * 14 13 11 34 34 H 1.09008 * 109.47110 * 299.99573 * 14 13 11 35 35 H 0.96696 * 113.99856 * 299.99660 * 17 15 14 36 36 H 1.08998 * 109.47450 * 300.00230 * 18 15 14 37 37 H 1.09003 * 109.47439 * 179.97438 * 18 15 14 38 38 H 1.08999 * 109.46983 * 59.99686 * 19 11 9 39 39 H 1.08999 * 109.46686 * 179.97438 * 19 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2898 1.0794 0.0000 4 6 1.7414 2.4830 0.0006 5 8 0.4815 2.5020 0.6746 6 14 2.9325 3.6147 0.8788 7 7 3.5850 0.8189 0.0051 8 6 3.9315 -0.4309 -0.0001 9 7 5.2385 -0.8925 0.0003 10 6 6.3517 0.0598 0.0008 11 6 5.5066 -2.3328 0.0001 12 1 5.0713 -2.7834 0.8921 13 6 4.8861 -2.9670 -1.2463 14 6 5.4970 -2.3344 -2.4983 15 6 7.0084 -2.5718 -2.5040 16 1 7.2079 -3.6434 -2.5041 17 8 7.5791 -1.9804 -3.6730 18 6 7.6290 -1.9376 -1.2576 19 6 7.0181 -2.5702 -0.0055 20 16 2.5413 -1.4261 -0.0002 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5141 0.8898 23 1 -0.3633 0.5135 -0.8902 24 1 1.6089 2.8217 -1.0270 25 1 0.5241 2.2119 1.5961 26 1 2.4035 5.0022 0.8856 27 1 3.1464 3.1452 2.2712 28 1 6.5617 0.3738 -1.0216 29 1 6.0851 0.9300 0.6006 30 1 7.2365 -0.4159 0.4238 31 1 5.0852 -4.0387 -1.2462 32 1 3.8093 -2.7979 -1.2422 33 1 5.0546 -2.7859 -3.3863 34 1 5.2974 -1.2628 -2.4982 35 1 7.2315 -2.3350 -4.5028 36 1 7.4295 -0.8660 -1.2574 37 1 8.7057 -2.1071 -1.2613 38 1 7.4601 -2.1184 0.8825 39 1 7.2175 -3.6418 -0.0052 There are 50 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 50 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_15557738_15704122.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:19:01 Heat of formation + Delta-G solvation = -6.886698 kcal Electronic energy + Delta-G solvation = -21827.995581 eV Core-core repulsion = 18671.919378 eV Total energy + Delta-G solvation = -3156.076203 eV No. of doubly occupied orbitals = 50 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 285.119 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.46267 -40.62639 -38.14163 -37.39538 -34.89909 -32.95806 -32.30954 -30.39297 -29.45171 -27.41630 -25.63935 -24.30481 -23.79432 -22.36865 -21.02093 -20.20212 -18.87718 -18.19911 -18.02042 -17.28601 -17.19851 -16.58881 -16.08044 -15.76336 -15.60852 -15.43774 -14.73140 -14.71638 -14.29496 -14.05611 -13.89100 -13.81881 -13.56891 -13.48525 -13.35515 -12.94410 -12.85507 -12.58707 -12.46694 -12.18463 -12.03035 -11.88712 -11.61193 -11.20498 -10.85688 -10.64108 -10.61667 -10.38721 -9.94886 -8.45530 -4.81285 -0.01725 0.15121 0.75400 1.28144 1.64436 1.76225 1.83420 1.99212 3.21241 3.24089 3.39099 3.58721 3.66046 3.95322 4.01572 4.12175 4.16404 4.26359 4.28025 4.34069 4.42416 4.44102 4.52516 4.59806 4.64082 4.75863 4.78874 4.85294 4.91226 4.95691 5.00377 5.07355 5.11287 5.12089 5.25014 5.28185 5.34769 5.80811 6.02647 6.37064 6.84947 6.92544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 C -0.268 4.268 3 C 0.056 3.944 4 C -0.041 4.041 5 O -0.533 6.533 6 Si 0.780 3.220 7 N -0.556 5.556 8 C 0.312 3.688 9 N -0.571 5.571 10 C 0.092 3.908 11 C 0.145 3.855 12 H 0.087 0.913 13 C -0.141 4.141 14 C -0.140 4.140 15 C 0.106 3.894 16 H 0.065 0.935 17 O -0.589 6.589 18 C -0.146 4.146 19 C -0.112 4.112 20 S 0.118 5.882 21 H 0.064 0.936 22 H 0.083 0.917 23 H 0.069 0.931 24 H 0.129 0.871 25 H 0.384 0.616 26 H -0.291 1.291 27 H -0.304 1.304 28 H 0.056 0.944 29 H 0.064 0.936 30 H 0.102 0.898 31 H 0.103 0.897 32 H 0.067 0.933 33 H 0.070 0.930 34 H 0.049 0.951 35 H 0.391 0.609 36 H 0.090 0.910 37 H 0.072 0.928 38 H 0.091 0.909 39 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.585 -5.372 -0.175 5.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.390 4.390 3 C -0.074 4.074 4 C -0.153 4.153 5 O -0.340 6.340 6 Si 0.686 3.314 7 N -0.284 5.284 8 C -0.058 4.058 9 N -0.290 5.290 10 C -0.052 4.052 11 C 0.042 3.958 12 H 0.104 0.896 13 C -0.180 4.180 14 C -0.178 4.178 15 C 0.048 3.952 16 H 0.083 0.917 17 O -0.397 6.397 18 C -0.183 4.183 19 C -0.150 4.150 20 S 0.369 5.631 21 H 0.082 0.918 22 H 0.102 0.898 23 H 0.088 0.912 24 H 0.146 0.854 25 H 0.233 0.767 26 H -0.219 1.219 27 H -0.231 1.231 28 H 0.074 0.926 29 H 0.083 0.917 30 H 0.120 0.880 31 H 0.121 0.879 32 H 0.085 0.915 33 H 0.088 0.912 34 H 0.068 0.932 35 H 0.240 0.760 36 H 0.108 0.892 37 H 0.091 0.909 38 H 0.110 0.890 39 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 3.262 -5.054 0.377 6.027 hybrid contribution -1.515 0.098 0.127 1.523 sum 1.747 -4.956 0.504 5.279 Atomic orbital electron populations 1.20115 0.85891 1.01953 1.03492 1.25478 1.02094 0.93914 1.17562 1.20182 0.87138 0.97465 1.02631 1.24466 0.91706 0.95222 1.03910 1.86595 1.28658 1.89071 1.29628 0.92883 0.85464 0.73840 0.79221 1.65715 1.17013 1.17111 1.28569 1.23450 0.92133 0.91504 0.98678 1.46178 0.99530 1.06403 1.76929 1.22109 0.88845 0.92657 1.01579 1.21457 0.98141 0.77644 0.98520 0.89554 1.22109 1.00189 1.01810 0.93890 1.22092 0.96400 1.00920 0.98405 1.21850 0.91067 0.96574 0.85722 0.91732 1.86484 1.68290 1.67786 1.17185 1.22195 1.00581 1.03086 0.92448 1.21746 0.91387 1.03563 0.98267 1.83821 0.95679 1.09638 1.73951 0.91753 0.89808 0.91186 0.85389 0.76654 1.21917 1.23131 0.92587 0.91689 0.87990 0.87890 0.91500 0.91166 0.93249 0.75972 0.89150 0.90948 0.89014 0.87849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.09 8.91 71.24 0.63 0.55 16 2 C -0.27 -1.28 6.50 24.58 0.16 -1.12 16 3 C 0.06 0.34 5.92 41.40 0.25 0.59 16 4 C -0.04 -0.16 2.94 71.23 0.21 0.04 16 5 O -0.53 -1.94 10.17 -148.98 -1.52 -3.46 16 6 Si 0.78 3.51 32.08 68.60 2.20 5.71 16 7 N -0.56 -3.79 8.25 -189.86 -1.57 -5.35 16 8 C 0.31 1.31 7.45 179.32 1.34 2.65 16 9 N -0.57 0.16 2.34 -711.59 -1.67 -1.51 16 10 C 0.09 -0.17 8.37 127.77 1.07 0.90 16 11 C 0.14 -0.69 2.87 44.99 0.13 -0.56 16 12 H 0.09 -0.49 8.14 -2.39 -0.02 -0.51 16 13 C -0.14 0.65 5.22 30.59 0.16 0.81 16 14 C -0.14 0.35 5.39 30.59 0.16 0.51 16 15 C 0.11 -0.30 3.47 30.59 0.11 -0.20 16 16 H 0.06 -0.33 8.14 -2.39 -0.02 -0.35 16 17 O -0.59 -0.49 13.32 -148.98 -1.98 -2.47 16 18 C -0.15 0.59 4.90 30.59 0.15 0.74 16 19 C -0.11 0.87 4.91 30.60 0.15 1.02 16 20 S 0.12 0.28 19.65 -56.49 -1.11 -0.83 16 21 H 0.06 -0.01 8.14 -2.39 -0.02 -0.02 16 22 H 0.08 0.01 6.39 -2.39 -0.02 0.00 16 23 H 0.07 0.18 8.14 -2.39 -0.02 0.16 16 24 H 0.13 0.34 7.96 -2.39 -0.02 0.32 16 25 H 0.38 -0.38 8.13 -74.05 -0.60 -0.98 16 26 H -0.29 -2.71 7.11 99.48 0.71 -2.00 16 27 H -0.30 -3.19 7.11 99.48 0.71 -2.49 16 28 H 0.06 -0.02 6.71 -2.39 -0.02 -0.04 16 29 H 0.06 0.02 7.78 -2.39 -0.02 0.00 16 30 H 0.10 -0.62 4.93 -2.39 -0.01 -0.63 16 31 H 0.10 -0.84 8.14 -2.39 -0.02 -0.86 16 32 H 0.07 -0.16 5.00 -9.87 -0.05 -0.21 16 33 H 0.07 -0.24 8.14 -2.38 -0.02 -0.26 16 34 H 0.05 0.14 7.61 -2.38 -0.02 0.12 16 35 H 0.39 -2.39 9.08 -74.06 -0.67 -3.07 16 36 H 0.09 -0.20 3.63 -2.39 -0.01 -0.21 16 37 H 0.07 -0.25 8.14 -2.39 -0.02 -0.27 16 38 H 0.09 -0.84 6.92 -2.39 -0.02 -0.85 16 39 H 0.10 -1.08 8.14 -2.39 -0.02 -1.10 16 Total: 0.00 -13.90 306.16 -1.32 -15.21 By element: Atomic # 1 Polarization: -13.05 SS G_CDS: -0.19 Total: -13.24 kcal Atomic # 6 Polarization: 1.43 SS G_CDS: 4.52 Total: 5.94 kcal Atomic # 7 Polarization: -3.63 SS G_CDS: -3.23 Total: -6.87 kcal Atomic # 8 Polarization: -2.43 SS G_CDS: -3.50 Total: -5.93 kcal Atomic # 14 Polarization: 3.51 SS G_CDS: 2.20 Total: 5.71 kcal Atomic # 16 Polarization: 0.28 SS G_CDS: -1.11 Total: -0.83 kcal Total: -13.90 -1.32 -15.21 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_15557738_15704122.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.328 kcal (2) G-P(sol) polarization free energy of solvation -13.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds