Wall clock time and date at job start Mon Mar 8 2021 05:19:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.39144 * 110.99967 * 2 1 4 4 N 1.32343 * 119.71551 * 236.02490 * 3 2 1 5 5 C 1.32008 * 121.64098 * 179.68315 * 4 3 2 6 6 C 1.37982 * 120.90206 * 0.62523 * 5 4 3 7 7 C 1.50699 * 120.32332 * 179.68380 * 6 5 4 8 8 O 1.42903 * 109.47152 * 244.72813 * 7 6 5 9 9 Si 1.86305 * 109.47184 * 4.72285 * 7 6 5 10 10 C 1.38903 * 119.34945 * 359.41138 * 6 5 4 11 11 C 1.38441 * 118.48245 * 0.27069 * 10 6 5 12 12 F 1.35096 * 120.47143 * 180.02562 * 11 10 6 13 13 C 1.46897 * 110.99913 * 236.04310 * 2 1 3 14 14 H 1.08998 * 109.47370 * 178.95473 * 13 2 1 15 15 C 1.53004 * 109.47168 * 298.95186 * 13 2 1 16 16 C 1.52996 * 109.47091 * 179.97438 * 15 13 2 17 17 C 1.53006 * 109.47304 * 300.00431 * 16 15 13 18 18 H 1.09002 * 109.46979 * 179.97438 * 17 16 15 19 19 O 1.42901 * 109.46809 * 299.99739 * 17 16 15 20 20 C 1.53003 * 109.47030 * 59.99782 * 17 16 15 21 21 C 1.52996 * 109.47079 * 58.95609 * 13 2 1 22 22 H 1.08994 * 109.47412 * 60.00142 * 1 2 3 23 23 H 1.08998 * 109.47143 * 180.02562 * 1 2 3 24 24 H 1.09006 * 109.47019 * 299.99873 * 1 2 3 25 25 H 1.08005 * 119.54357 * 180.33569 * 5 4 3 26 26 H 1.08997 * 109.47198 * 124.72491 * 7 6 5 27 27 H 0.96700 * 114.00311 * 180.02562 * 8 7 6 28 28 H 1.48499 * 109.99670 * 178.68093 * 9 7 6 29 29 H 1.48497 * 110.00233 * 300.00062 * 9 7 6 30 30 H 1.07998 * 120.75510 * 180.25095 * 10 6 5 31 31 H 1.08996 * 109.47337 * 300.00425 * 15 13 2 32 32 H 1.09003 * 109.46567 * 60.00360 * 15 13 2 33 33 H 1.09003 * 109.46953 * 60.00017 * 16 15 13 34 34 H 1.08999 * 109.47315 * 180.02562 * 16 15 13 35 35 H 0.96696 * 113.99641 * 180.02562 * 19 17 16 36 36 H 1.08998 * 109.46946 * 60.00361 * 20 17 16 37 37 H 1.08996 * 109.46968 * 179.97438 * 20 17 16 38 38 H 1.09008 * 109.47185 * 299.99618 * 21 13 2 39 39 H 1.08999 * 109.47255 * 59.99614 * 21 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9676 1.2990 0.0000 4 7 2.8024 1.6813 -0.9532 5 6 3.2935 2.9059 -0.9934 6 6 2.9615 3.8347 -0.0285 7 6 3.5354 5.2271 -0.0832 8 8 4.3747 5.4413 1.0533 9 14 4.5374 5.4250 -1.6412 10 6 2.0886 3.4754 0.9905 11 6 1.5841 2.1862 1.0038 12 9 0.7319 1.7940 1.9758 13 6 1.9954 -0.7660 -1.1375 14 1 3.0848 -0.7343 -1.1240 15 6 1.5263 -2.2188 -1.0350 16 6 2.0740 -3.0164 -2.2201 17 6 1.5618 -2.4060 -3.5262 18 1 1.9524 -2.9740 -4.3705 19 8 0.1335 -2.4476 -3.5434 20 6 2.0310 -0.9533 -3.6287 21 6 1.4837 -0.1558 -2.4439 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 3.9681 3.1833 -1.7900 26 1 2.7240 5.9549 -0.0781 27 1 4.7788 6.3193 1.0840 28 1 5.0826 6.8039 -1.7227 29 1 5.6470 4.4382 -1.6604 30 1 1.8101 4.1854 1.7551 31 1 1.8908 -2.6535 -0.1043 32 1 0.4368 -2.2505 -1.0486 33 1 3.1635 -2.9846 -2.2070 34 1 1.7394 -4.0512 -2.1473 35 1 -0.2612 -2.0765 -4.3444 36 1 3.1204 -0.9216 -3.6156 37 1 1.6664 -0.5185 -4.5594 38 1 0.3942 -0.1876 -2.4575 39 1 1.8179 0.8791 -2.5169 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_15557738_17656566.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:19:03 Heat of formation + Delta-G solvation = -60.631893 kcal Electronic energy + Delta-G solvation = -23577.560194 eV Core-core repulsion = 20016.084821 eV Total energy + Delta-G solvation = -3561.475373 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 283.137 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -50.11412 -42.05792 -40.35361 -38.45440 -37.54173 -35.04105 -33.64142 -32.00531 -31.73168 -29.73729 -28.08158 -25.86560 -25.06218 -23.74042 -23.05091 -22.10047 -20.45843 -18.95657 -18.61095 -18.52304 -18.11135 -17.70540 -17.05826 -16.85245 -16.25399 -15.87081 -15.83838 -15.68631 -15.37902 -15.08087 -14.61025 -14.46731 -14.33743 -14.13214 -13.93113 -13.65260 -13.19761 -13.07553 -13.01498 -12.70578 -12.57330 -12.30552 -12.05835 -11.98631 -11.49781 -11.23184 -11.04436 -10.90410 -10.58861 -10.53663 -10.36200 -9.15631 -4.93875 -0.30512 -0.08865 1.24591 1.59664 1.94477 2.18308 2.37128 2.99678 3.11771 3.27741 3.44863 3.58327 3.70516 3.75034 3.78913 3.96752 4.02614 4.12202 4.20526 4.26125 4.29587 4.33160 4.42589 4.48937 4.52821 4.59531 4.60882 4.77627 4.82547 4.86823 4.95356 5.04838 5.11610 5.19061 5.20354 5.27489 5.37902 5.49564 5.60345 5.95215 6.56081 6.64008 6.93535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 N -0.482 5.482 3 C 0.285 3.715 4 N -0.491 5.491 5 C 0.118 3.882 6 C -0.130 4.130 7 C -0.076 4.076 8 O -0.559 6.559 9 Si 0.763 3.237 10 C -0.061 4.061 11 C 0.015 3.985 12 F -0.130 7.130 13 C 0.100 3.900 14 H 0.080 0.920 15 C -0.108 4.108 16 C -0.111 4.111 17 C 0.103 3.897 18 H 0.065 0.935 19 O -0.580 6.580 20 C -0.139 4.139 21 C -0.137 4.137 22 H 0.048 0.952 23 H 0.094 0.906 24 H 0.081 0.919 25 H 0.182 0.818 26 H 0.106 0.894 27 H 0.399 0.601 28 H -0.280 1.280 29 H -0.293 1.293 30 H 0.162 0.838 31 H 0.061 0.939 32 H 0.068 0.932 33 H 0.084 0.916 34 H 0.069 0.931 35 H 0.389 0.611 36 H 0.074 0.926 37 H 0.076 0.924 38 H 0.059 0.941 39 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.871 3.473 -5.110 6.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.197 5.197 3 C 0.052 3.948 4 N -0.204 5.204 5 C -0.040 4.040 6 C -0.133 4.133 7 C -0.185 4.185 8 O -0.369 6.369 9 Si 0.667 3.333 10 C -0.087 4.087 11 C -0.009 4.009 12 F -0.109 7.109 13 C -0.006 4.006 14 H 0.098 0.902 15 C -0.146 4.146 16 C -0.149 4.149 17 C 0.044 3.956 18 H 0.082 0.918 19 O -0.388 6.388 20 C -0.177 4.177 21 C -0.176 4.176 22 H 0.067 0.933 23 H 0.113 0.887 24 H 0.100 0.900 25 H 0.199 0.801 26 H 0.124 0.876 27 H 0.250 0.750 28 H -0.206 1.206 29 H -0.220 1.220 30 H 0.180 0.820 31 H 0.080 0.920 32 H 0.087 0.913 33 H 0.102 0.898 34 H 0.088 0.912 35 H 0.238 0.762 36 H 0.093 0.907 37 H 0.095 0.905 38 H 0.078 0.922 39 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 0.123 1.839 -4.888 5.224 hybrid contribution -0.095 1.636 1.004 1.922 sum 0.029 3.475 -3.885 5.212 Atomic orbital electron populations 1.22745 0.83137 1.04765 1.02562 1.59370 1.10194 1.07342 1.42829 1.20171 0.94569 0.89750 0.90322 1.67903 1.12197 1.18465 1.21841 1.22844 0.96041 0.87297 0.97770 1.20219 0.99223 0.97273 0.96605 1.24855 0.99569 0.94722 0.99372 1.86548 1.65892 1.40508 1.43981 0.94220 0.81098 0.77595 0.80367 1.21583 0.94514 0.93977 0.98662 1.18267 0.97728 0.94726 0.90227 1.91449 1.67775 1.91143 1.60524 1.21650 0.99640 0.92401 0.86934 0.90167 1.21528 1.01448 0.93181 0.98408 1.21541 1.00875 0.99386 0.93136 1.21829 0.80969 0.95121 0.97659 0.91753 1.86480 1.19938 1.85671 1.46730 1.22102 1.01806 0.95448 0.98379 1.22084 1.00400 1.00887 0.94228 0.93319 0.88718 0.89997 0.80114 0.87646 0.75000 1.20649 1.22029 0.82037 0.91981 0.91343 0.89771 0.91188 0.76182 0.90684 0.90493 0.92234 0.90105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.04 8.41 127.69 1.07 1.12 16 2 N -0.48 -2.85 4.74 -702.33 -3.33 -6.18 16 3 C 0.29 1.89 6.04 133.08 0.80 2.70 16 4 N -0.49 -2.42 6.48 -193.03 -1.25 -3.67 16 5 C 0.12 0.16 9.83 84.61 0.83 0.99 16 6 C -0.13 -0.11 5.39 -19.77 -0.11 -0.22 16 7 C -0.08 0.27 2.81 71.24 0.20 0.47 16 8 O -0.56 0.20 12.82 -148.98 -1.91 -1.71 16 9 Si 0.76 -3.88 29.87 68.60 2.05 -1.83 16 10 C -0.06 -0.18 9.82 22.48 0.22 0.04 16 11 C 0.01 0.09 7.00 22.58 0.16 0.25 16 12 F -0.13 -1.04 14.80 44.97 0.67 -0.38 16 13 C 0.10 0.36 1.86 44.92 0.08 0.45 16 14 H 0.08 0.48 7.75 -2.39 -0.02 0.46 16 15 C -0.11 -0.29 4.86 30.59 0.15 -0.14 16 16 C -0.11 -0.03 5.66 30.59 0.17 0.14 16 17 C 0.10 -0.13 3.77 30.60 0.12 -0.02 16 18 H 0.06 -0.20 8.14 -2.39 -0.02 -0.22 16 19 O -0.58 -0.16 11.97 -148.98 -1.78 -1.94 16 20 C -0.14 0.28 5.63 30.58 0.17 0.46 16 21 C -0.14 -0.17 4.30 30.58 0.13 -0.04 16 22 H 0.05 0.11 6.51 -2.39 -0.02 0.10 16 23 H 0.09 0.18 6.13 -2.39 -0.01 0.17 16 24 H 0.08 0.32 5.73 -2.38 -0.01 0.31 16 25 H 0.18 -0.62 4.87 -2.91 -0.01 -0.63 16 26 H 0.11 -0.87 7.96 -2.39 -0.02 -0.89 16 27 H 0.40 -3.39 8.74 -74.06 -0.65 -4.04 16 28 H -0.28 0.28 7.11 99.48 0.71 0.99 16 29 H -0.29 -0.61 7.06 99.48 0.70 0.09 16 30 H 0.16 -0.01 8.06 -2.91 -0.02 -0.04 16 31 H 0.06 0.24 8.14 -2.39 -0.02 0.22 16 32 H 0.07 0.28 5.88 -2.39 -0.01 0.27 16 33 H 0.08 -0.11 8.14 -2.39 -0.02 -0.13 16 34 H 0.07 0.07 8.14 -2.39 -0.02 0.05 16 35 H 0.39 -2.60 9.08 -74.06 -0.67 -3.28 16 36 H 0.07 -0.15 8.14 -2.39 -0.02 -0.17 16 37 H 0.08 -0.33 8.14 -2.39 -0.02 -0.35 16 38 H 0.06 0.14 6.01 -2.38 -0.01 0.13 16 39 H 0.08 0.22 5.65 -2.39 -0.01 0.21 16 Total: 0.00 -14.52 301.46 -1.74 -16.26 By element: Atomic # 1 Polarization: -6.57 SS G_CDS: -0.19 Total: -6.76 kcal Atomic # 6 Polarization: 2.21 SS G_CDS: 4.01 Total: 6.21 kcal Atomic # 7 Polarization: -5.27 SS G_CDS: -4.58 Total: -9.85 kcal Atomic # 8 Polarization: 0.04 SS G_CDS: -3.69 Total: -3.66 kcal Atomic # 9 Polarization: -1.04 SS G_CDS: 0.67 Total: -0.38 kcal Atomic # 14 Polarization: -3.88 SS G_CDS: 2.05 Total: -1.83 kcal Total: -14.52 -1.74 -16.26 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_15557738_17656566.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.374 kcal (2) G-P(sol) polarization free energy of solvation -14.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds