Wall clock time and date at job start Mon Mar 8 2021 06:48:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42896 * 1 3 3 Si 1.86303 * 109.46928 * 2 1 4 4 C 1.50707 * 109.47161 * 240.00380 * 2 1 3 5 5 C 1.38601 * 120.71759 * 299.99869 * 4 2 1 6 6 N 1.32282 * 119.19485 * 179.97438 * 5 4 2 7 7 C 1.32488 * 120.73685 * 359.97438 * 6 5 4 8 8 N 1.38406 * 119.21530 * 179.97438 * 7 6 5 9 9 C 1.46497 * 120.00405 * 180.02562 * 8 7 6 10 10 H 1.09002 * 112.90477 * 336.25221 * 9 8 7 11 11 C 1.53779 * 113.61581 * 107.50394 * 9 8 7 12 12 C 1.53779 * 87.08402 * 139.98450 * 11 9 8 13 13 H 1.08997 * 113.61646 * 220.02209 * 12 11 9 14 14 N 1.46497 * 113.69123 * 89.12592 * 12 11 9 15 15 C 1.36891 * 126.39507 * 142.18304 * 14 12 11 16 16 C 1.34667 * 106.81267 * 179.84158 * 15 14 12 17 17 N 1.34121 * 108.02279 * 0.42210 * 16 15 14 18 18 C 1.30494 * 109.26134 * 359.73107 * 17 16 15 19 19 C 1.53784 * 113.61569 * 205.00175 * 9 8 7 20 20 N 1.32489 * 121.57244 * 0.28019 * 7 6 5 21 21 C 1.32284 * 120.73758 * 359.43942 * 20 7 6 22 22 H 0.96700 * 114.00624 * 59.99418 * 1 2 3 23 23 H 1.08995 * 109.47266 * 120.00245 * 2 1 3 24 24 H 1.48503 * 109.99772 * 60.00532 * 3 2 1 25 25 H 1.48503 * 109.99727 * 181.31907 * 3 2 1 26 26 H 1.08002 * 120.40386 * 359.95694 * 5 4 2 27 27 H 0.97009 * 120.00061 * 0.02562 * 8 7 6 28 28 H 1.09006 * 113.61307 * 25.43652 * 11 9 8 29 29 H 1.09007 * 113.61642 * 254.53409 * 11 9 8 30 30 H 1.07997 * 126.59042 * 359.97438 * 15 14 12 31 31 H 1.08003 * 125.98618 * 180.12090 * 16 15 14 32 32 H 1.08004 * 125.65980 * 180.02562 * 18 17 16 33 33 H 1.09004 * 113.61451 * 105.47149 * 19 9 8 34 34 H 1.08994 * 113.61477 * 334.56451 * 19 9 8 35 35 H 1.07994 * 120.40175 * 180.25803 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9313 -0.7104 -1.2306 5 6 1.6056 -2.0370 -1.4647 6 7 2.0626 -2.6309 -2.5549 7 6 2.8224 -1.9717 -3.4171 8 7 3.2838 -2.6241 -4.5473 9 6 4.1256 -1.9120 -5.5118 10 1 3.9902 -0.8310 -5.4762 11 6 5.5995 -2.3495 -5.4842 12 6 5.5767 -2.2482 -7.0185 13 1 6.1219 -3.0496 -7.5172 14 7 5.9281 -0.9196 -7.5260 15 6 6.6679 -0.6471 -8.6450 16 6 6.7460 0.6937 -8.7434 17 7 6.0802 1.2252 -7.7075 18 6 5.5875 0.2649 -6.9741 19 6 4.0610 -2.4943 -6.9337 20 7 3.1560 -0.7047 -3.2204 21 6 2.7278 -0.0506 -2.1533 22 1 -0.3934 0.4418 -0.7650 23 1 1.7923 -0.5138 0.8899 24 1 1.5614 2.4678 1.2086 25 1 3.5345 1.7703 -0.0321 26 1 0.9866 -2.5795 -0.7655 27 1 3.0498 -3.5530 -4.7007 28 1 5.7467 -3.3648 -5.1158 29 1 6.2611 -1.6255 -5.0086 30 1 7.1033 -1.3687 -9.3204 31 1 7.2594 1.2444 -9.5178 32 1 5.0038 0.3956 -6.0748 33 1 3.4806 -1.8871 -7.6283 34 1 3.7877 -3.5491 -6.9616 35 1 2.9997 0.9833 -2.0005 There are 49 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 49 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_15607998_12175864.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:48:03 Heat of formation + Delta-G solvation = 138.503914 kcal Electronic energy + Delta-G solvation = -20478.368072 eV Core-core repulsion = 17288.245508 eV Total energy + Delta-G solvation = -3190.122564 eV No. of doubly occupied orbitals = 49 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 274.117 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.23142 -42.11927 -40.11300 -38.00886 -35.85360 -34.75977 -33.24289 -31.82453 -30.23343 -27.17347 -26.93104 -26.05754 -25.35601 -23.27212 -22.45057 -21.99247 -21.04636 -19.41407 -18.87504 -18.06155 -17.79400 -16.77152 -16.61045 -16.22661 -16.18954 -15.81293 -15.63963 -15.42581 -15.18030 -14.80422 -14.59172 -14.08832 -14.01882 -13.70415 -13.56690 -13.27536 -12.86731 -12.40058 -12.24681 -11.93231 -11.80545 -11.78761 -11.29823 -10.92993 -10.55925 -10.55434 -10.06943 -9.46916 -9.14284 -4.99922 0.01882 0.10397 1.08198 1.31284 1.62372 1.77234 1.78334 1.97847 2.20627 2.74745 3.08826 3.15868 3.36056 3.52130 3.61001 3.66202 3.68227 3.70399 3.77634 3.90382 4.03003 4.23182 4.30165 4.40504 4.54766 4.58029 4.60758 4.71724 4.76003 4.77762 4.84297 4.98158 5.26857 5.33131 5.72202 5.82129 5.99708 6.26102 6.36374 6.77738 7.13274 7.23404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.554 6.554 2 C -0.045 4.045 3 Si 0.763 3.237 4 C -0.285 4.285 5 C 0.213 3.787 6 N -0.587 5.587 7 C 0.551 3.449 8 N -0.678 5.678 9 C 0.131 3.869 10 H 0.110 0.890 11 C -0.152 4.152 12 C 0.109 3.891 13 H 0.145 0.855 14 N -0.441 5.441 15 C -0.042 4.042 16 C -0.063 4.063 17 N -0.538 5.538 18 C 0.171 3.829 19 C -0.140 4.140 20 N -0.577 5.577 21 C 0.193 3.807 22 H 0.395 0.605 23 H 0.114 0.886 24 H -0.296 1.296 25 H -0.283 1.283 26 H 0.182 0.818 27 H 0.422 0.578 28 H 0.121 0.879 29 H 0.069 0.931 30 H 0.206 0.794 31 H 0.178 0.822 32 H 0.213 0.787 33 H 0.077 0.923 34 H 0.132 0.868 35 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.677 -3.929 -2.039 4.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.361 6.361 2 C -0.157 4.157 3 Si 0.669 3.331 4 C -0.293 4.293 5 C 0.046 3.954 6 N -0.309 5.309 7 C 0.194 3.806 8 N -0.314 5.314 9 C 0.025 3.975 10 H 0.128 0.872 11 C -0.191 4.191 12 C 0.005 3.995 13 H 0.163 0.837 14 N -0.124 5.124 15 C -0.175 4.175 16 C -0.210 4.210 17 N -0.257 5.257 18 C -0.111 4.111 19 C -0.179 4.179 20 N -0.300 5.300 21 C 0.026 3.974 22 H 0.245 0.755 23 H 0.132 0.868 24 H -0.223 1.223 25 H -0.210 1.210 26 H 0.199 0.801 27 H 0.261 0.739 28 H 0.139 0.861 29 H 0.088 0.912 30 H 0.223 0.777 31 H 0.195 0.805 32 H 0.229 0.771 33 H 0.096 0.904 34 H 0.150 0.850 35 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 0.215 -3.345 -1.856 3.832 hybrid contribution -0.149 -1.115 0.887 1.433 sum 0.066 -4.461 -0.969 4.565 Atomic orbital electron populations 1.86476 1.17115 1.82024 1.50514 1.24752 0.85180 1.09852 0.95891 0.93959 0.77997 0.75459 0.85664 1.21766 1.07398 0.98116 1.02054 1.23132 0.90316 0.91187 0.90792 1.68013 1.16757 1.39834 1.06322 1.19698 0.87130 0.86008 0.87754 1.44151 1.53594 1.14597 1.19048 1.22833 0.89224 0.98025 0.87429 0.87237 1.23942 0.96980 1.04586 0.93609 1.22318 0.98131 0.82520 0.96495 0.83691 1.45464 1.39118 1.07252 1.20573 1.23226 1.02449 0.98583 0.93267 1.22703 1.05449 0.92757 1.00063 1.70272 1.14957 1.33272 1.07162 1.25269 1.04091 0.79981 1.01741 1.23823 0.94296 1.04605 0.95179 1.67919 1.28763 1.08698 1.24605 1.23166 0.88183 0.99640 0.86420 0.75511 0.86823 1.22325 1.21018 0.80068 0.73867 0.86096 0.91205 0.77691 0.80526 0.77116 0.90397 0.85025 0.79817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 1.49 12.79 -148.98 -1.90 -0.42 16 2 C -0.04 0.15 2.85 71.24 0.20 0.35 16 3 Si 0.76 -3.11 29.87 68.60 2.05 -1.06 16 4 C -0.29 0.39 5.40 -19.69 -0.11 0.28 16 5 C 0.21 0.19 10.92 84.71 0.93 1.12 16 6 N -0.59 -2.32 10.46 -197.99 -2.07 -4.39 16 7 C 0.55 1.66 8.42 261.49 2.20 3.87 16 8 N -0.68 1.68 5.50 -327.94 -1.80 -0.13 16 9 C 0.13 -0.63 3.74 45.52 0.17 -0.46 16 10 H 0.11 -0.17 4.87 -2.39 -0.01 -0.18 16 11 C -0.15 0.99 7.30 31.12 0.23 1.21 16 12 C 0.11 -0.82 4.87 45.52 0.22 -0.60 16 13 H 0.15 -1.76 8.14 -2.39 -0.02 -1.77 16 14 N -0.44 0.34 2.94 -503.80 -1.48 -1.14 16 15 C -0.04 0.00 11.58 83.08 0.96 0.96 16 16 C -0.06 -0.36 11.87 83.52 0.99 0.63 16 17 N -0.54 -5.58 11.25 -200.31 -2.25 -7.84 16 18 C 0.17 0.74 11.20 180.26 2.02 2.76 16 19 C -0.14 1.20 7.54 31.12 0.23 1.44 16 20 N -0.58 -1.66 9.13 -197.99 -1.81 -3.46 16 21 C 0.19 -0.11 9.92 84.71 0.84 0.73 16 22 H 0.39 -3.98 8.70 -74.06 -0.64 -4.62 16 23 H 0.11 -0.33 7.96 -2.39 -0.02 -0.35 16 24 H -0.30 -1.09 7.11 99.48 0.71 -0.39 16 25 H -0.28 -0.21 7.11 99.48 0.71 0.50 16 26 H 0.18 -0.44 8.06 -2.91 -0.02 -0.47 16 27 H 0.42 -2.31 8.84 -92.70 -0.82 -3.13 16 28 H 0.12 -1.10 8.14 -2.38 -0.02 -1.12 16 29 H 0.07 -0.18 8.03 -2.38 -0.02 -0.20 16 30 H 0.21 -1.51 8.06 -2.91 -0.02 -1.53 16 31 H 0.18 0.40 8.06 -2.91 -0.02 0.38 16 32 H 0.21 0.22 5.86 -2.91 -0.02 0.20 16 33 H 0.08 -0.43 8.14 -2.39 -0.02 -0.45 16 34 H 0.13 -1.71 8.12 -2.39 -0.02 -1.73 16 35 H 0.19 -0.99 5.04 -2.91 -0.01 -1.01 16 Total: 0.00 -21.34 297.81 -0.66 -22.00 By element: Atomic # 1 Polarization: -15.58 SS G_CDS: -0.28 Total: -15.86 kcal Atomic # 6 Polarization: 3.40 SS G_CDS: 8.89 Total: 12.29 kcal Atomic # 7 Polarization: -7.54 SS G_CDS: -9.42 Total: -16.96 kcal Atomic # 8 Polarization: 1.49 SS G_CDS: -1.90 Total: -0.42 kcal Atomic # 14 Polarization: -3.11 SS G_CDS: 2.05 Total: -1.06 kcal Total: -21.34 -0.66 -22.00 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_15607998_12175864.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.507 kcal (2) G-P(sol) polarization free energy of solvation -21.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 139.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.003 kcal (6) G-S(sol) free energy of system = (1) + (5) 138.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds