Wall clock time and date at job start Mon Mar 8 2021 06:48:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42893 * 1 3 3 Si 1.86307 * 109.47163 * 2 1 4 4 C 1.50704 * 109.47296 * 240.00215 * 2 1 3 5 5 C 1.38835 * 120.33719 * 300.00297 * 4 2 1 6 6 C 1.38339 * 118.51122 * 180.02562 * 5 4 2 7 7 C 1.39093 * 119.09399 * 359.97438 * 6 5 4 8 8 N 1.39005 * 119.70448 * 179.97438 * 7 6 5 9 9 C 1.46502 * 119.99898 * 359.97438 * 8 7 6 10 10 H 1.09000 * 112.84940 * 23.81040 * 9 8 7 11 11 C 1.53787 * 113.61073 * 155.00427 * 9 8 7 12 12 C 1.53784 * 87.07923 * 140.06858 * 11 9 8 13 13 H 1.09004 * 113.61162 * 220.01809 * 12 11 9 14 14 N 1.46499 * 113.61434 * 89.11404 * 12 11 9 15 15 C 1.36885 * 126.39635 * 119.71704 * 14 12 11 16 16 C 1.34668 * 106.81604 * 179.84388 * 15 14 12 17 17 N 1.34128 * 108.02325 * 0.41536 * 16 15 14 18 18 C 1.30502 * 109.25526 * 359.73802 * 17 16 15 19 19 C 1.53779 * 87.08045 * 334.56667 * 12 11 9 20 20 N 1.32423 * 120.59077 * 0.25444 * 7 6 5 21 21 C 1.31936 * 121.62498 * 359.47702 * 20 7 6 22 22 H 0.96697 * 114.00121 * 300.00113 * 1 2 3 23 23 H 1.08997 * 109.47382 * 119.99920 * 2 1 3 24 24 H 1.48500 * 109.99749 * 178.68072 * 3 2 1 25 25 H 1.48495 * 109.99972 * 299.99867 * 3 2 1 26 26 H 1.08005 * 120.74213 * 359.97438 * 5 4 2 27 27 H 1.07994 * 120.45537 * 179.97438 * 6 5 4 28 28 H 0.97001 * 120.00394 * 180.02562 * 8 7 6 29 29 H 1.09004 * 113.61202 * 254.61611 * 11 9 8 30 30 H 1.08994 * 113.61447 * 25.52042 * 11 9 8 31 31 H 1.07994 * 126.59066 * 359.97298 * 15 14 12 32 32 H 1.07998 * 125.98912 * 180.12130 * 16 15 14 33 33 H 1.07998 * 125.65049 * 179.97438 * 18 17 16 34 34 H 1.09006 * 113.61307 * 270.88660 * 19 12 11 35 35 H 1.08999 * 113.69146 * 139.99146 * 19 12 11 36 36 H 1.08004 * 119.57707 * 180.24558 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7104 -1.2305 5 6 1.6002 -2.0395 -1.4573 6 6 2.0823 -2.6546 -2.5987 7 6 2.8776 -1.9247 -3.4758 8 7 3.3694 -2.5304 -4.6263 9 6 3.0498 -3.9317 -4.9102 10 1 2.1352 -4.2650 -4.4197 11 6 3.1117 -4.2869 -6.4052 12 6 3.7597 -5.6158 -5.9819 13 1 4.5720 -5.9332 -6.6358 14 7 2.7913 -6.6826 -5.7165 15 6 2.7091 -7.8850 -6.3655 16 6 1.6864 -8.5600 -5.8071 17 7 1.1526 -7.7872 -4.8497 18 6 1.8093 -6.6610 -4.7897 19 6 4.2377 -4.8884 -4.7142 20 7 3.1751 -0.6595 -3.2219 21 6 2.7251 -0.0459 -2.1441 22 1 -0.3933 0.4417 0.7650 23 1 1.7923 -0.5138 0.8900 24 1 3.5346 1.7703 0.0321 25 1 1.5615 2.4679 -1.2085 26 1 0.9807 -2.5812 -0.7577 27 1 1.8445 -3.6875 -2.8059 28 1 3.9247 -2.0255 -5.2408 29 1 2.1313 -4.4065 -6.8665 30 1 3.7753 -3.6412 -6.9802 31 1 3.3440 -8.2273 -7.1693 32 1 1.3514 -9.5484 -6.0851 33 1 1.6016 -5.8466 -4.1115 34 1 5.2092 -4.4070 -4.8271 35 1 4.1671 -5.4925 -3.8097 36 1 2.9851 0.9881 -1.9717 There are 49 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 49 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_15607998_13915762.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:48:06 Heat of formation + Delta-G solvation = 122.317250 kcal Electronic energy + Delta-G solvation = -20325.262040 eV Core-core repulsion = 17199.863480 eV Total energy + Delta-G solvation = -3125.398560 eV No. of doubly occupied orbitals = 49 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.32651 -41.52229 -40.20686 -37.86954 -35.87184 -33.60536 -33.01194 -31.29808 -30.26576 -27.26035 -27.08480 -25.60303 -24.85286 -22.82687 -22.44474 -21.85124 -21.16669 -18.92030 -18.59864 -18.26063 -17.90242 -16.94099 -16.54903 -16.33188 -16.16853 -15.55307 -15.42082 -15.25612 -15.06579 -14.83491 -14.22790 -14.10764 -14.06374 -13.85030 -13.80522 -13.76211 -13.12367 -12.59391 -12.31746 -12.08938 -11.97795 -11.26517 -10.91866 -10.79989 -10.63773 -10.60515 -10.22719 -9.50077 -8.81888 -5.00444 0.14721 0.36513 1.01282 1.27211 1.59489 1.62344 1.89246 1.95396 2.24060 2.71029 2.82953 3.07055 3.29380 3.34001 3.42230 3.51295 3.63838 3.78303 3.79771 3.89954 3.98975 4.05878 4.16272 4.22920 4.25303 4.37940 4.45942 4.48899 4.53635 4.65027 4.66979 4.76666 4.95429 5.22573 5.24772 5.40212 5.77141 5.85897 6.15569 6.37847 6.61844 7.04809 7.11292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.548 6.548 2 C -0.057 4.057 3 Si 0.678 3.322 4 C -0.187 4.187 5 C 0.000 4.000 6 C -0.237 4.237 7 C 0.405 3.595 8 N -0.711 5.711 9 C 0.127 3.873 10 H 0.113 0.887 11 C -0.151 4.151 12 C 0.109 3.891 13 H 0.121 0.879 14 N -0.444 5.444 15 C -0.051 4.051 16 C -0.028 4.028 17 N -0.489 5.489 18 C 0.175 3.825 19 C -0.160 4.160 20 N -0.537 5.537 21 C 0.151 3.849 22 H 0.382 0.618 23 H 0.073 0.927 24 H -0.253 1.253 25 H -0.249 1.249 26 H 0.140 0.860 27 H 0.133 0.867 28 H 0.408 0.592 29 H 0.088 0.912 30 H 0.110 0.890 31 H 0.176 0.824 32 H 0.172 0.828 33 H 0.199 0.801 34 H 0.110 0.890 35 H 0.086 0.914 36 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.359 1.138 1.119 2.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.354 6.354 2 C -0.168 4.168 3 Si 0.579 3.421 4 C -0.191 4.191 5 C -0.026 4.026 6 C -0.261 4.261 7 C 0.170 3.830 8 N -0.343 5.343 9 C 0.021 3.979 10 H 0.130 0.870 11 C -0.190 4.190 12 C 0.004 3.996 13 H 0.139 0.861 14 N -0.128 5.128 15 C -0.183 4.183 16 C -0.176 4.176 17 N -0.207 5.207 18 C -0.107 4.107 19 C -0.200 4.200 20 N -0.253 5.253 21 C -0.007 4.007 22 H 0.230 0.770 23 H 0.091 0.909 24 H -0.178 1.178 25 H -0.173 1.173 26 H 0.158 0.842 27 H 0.151 0.849 28 H 0.245 0.755 29 H 0.107 0.893 30 H 0.128 0.872 31 H 0.193 0.807 32 H 0.189 0.811 33 H 0.215 0.785 34 H 0.128 0.872 35 H 0.104 0.896 36 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 2.829 1.573 -0.008 3.237 hybrid contribution 0.498 -0.585 -0.398 0.866 sum 3.328 0.988 -0.407 3.495 Atomic orbital electron populations 1.86488 1.17386 1.81788 1.49719 1.24430 0.85544 1.09968 0.96886 0.95267 0.80804 0.78277 0.87713 1.20060 1.04524 0.95806 0.98749 1.21200 0.93303 0.93119 0.94996 1.21452 1.05405 1.01785 0.97505 1.18378 0.89292 0.88436 0.86902 1.44391 1.56064 1.11061 1.22772 1.22782 0.98356 0.80526 0.96274 0.86960 1.23827 1.03364 0.95316 0.96530 1.22122 0.91522 0.86367 0.99584 0.86099 1.45291 1.25340 1.13858 1.28289 1.22789 1.04781 0.87253 1.03470 1.22395 0.96943 1.01082 0.97159 1.70351 1.27476 1.02676 1.20162 1.24958 0.89657 0.99365 0.96698 1.24023 1.00571 0.97632 0.97737 1.67112 1.27276 1.09195 1.21737 1.22028 0.92464 0.98125 0.88061 0.77018 0.90878 1.17798 1.17343 0.84228 0.84932 0.75542 0.89345 0.87208 0.80682 0.81090 0.78506 0.87178 0.89567 0.83636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -0.02 12.75 -35.23 -0.45 -0.47 16 2 C -0.06 0.01 2.83 36.01 0.10 0.11 16 3 Si 0.68 -0.75 29.82 -169.99 -5.07 -5.82 16 4 C -0.19 -0.45 5.43 -104.46 -0.57 -1.02 16 5 C 0.00 0.00 9.76 -39.32 -0.38 -0.38 16 6 C -0.24 -0.29 9.29 -39.23 -0.36 -0.66 16 7 C 0.40 0.89 7.65 -155.01 -1.19 -0.29 16 8 N -0.71 0.50 5.53 -53.14 -0.29 0.20 16 9 C 0.13 -0.34 3.52 -67.12 -0.24 -0.58 16 10 H 0.11 -0.29 3.59 -51.93 -0.19 -0.47 16 11 C -0.15 0.55 7.54 -25.91 -0.20 0.35 16 12 C 0.11 -0.36 4.88 -67.12 -0.33 -0.69 16 13 H 0.12 -0.57 8.14 -51.93 -0.42 -0.99 16 14 N -0.44 0.25 2.94 -110.59 -0.33 -0.07 16 15 C -0.05 0.00 11.58 -16.56 -0.19 -0.19 16 16 C -0.03 -0.06 11.87 -17.81 -0.21 -0.27 16 17 N -0.49 -1.99 11.25 -14.66 -0.16 -2.16 16 18 C 0.17 0.20 11.19 -90.37 -1.01 -0.82 16 19 C -0.16 0.54 7.30 -25.92 -0.19 0.35 16 20 N -0.54 -2.23 10.39 -12.44 -0.13 -2.36 16 21 C 0.15 0.54 9.84 -17.57 -0.17 0.37 16 22 H 0.38 -1.90 8.74 45.56 0.40 -1.50 16 23 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 24 H -0.25 -0.32 7.11 56.52 0.40 0.08 16 25 H -0.25 -0.55 7.11 56.52 0.40 -0.15 16 26 H 0.14 0.01 8.06 -52.48 -0.42 -0.42 16 27 H 0.13 -0.15 6.03 -52.49 -0.32 -0.46 16 28 H 0.41 -0.56 8.85 -40.82 -0.36 -0.92 16 29 H 0.09 -0.21 8.14 -51.93 -0.42 -0.63 16 30 H 0.11 -0.54 8.12 -51.93 -0.42 -0.96 16 31 H 0.18 -0.50 8.06 -52.49 -0.42 -0.92 16 32 H 0.17 0.04 8.06 -52.49 -0.42 -0.38 16 33 H 0.20 -0.29 5.86 -52.49 -0.31 -0.60 16 34 H 0.11 -0.43 8.14 -51.93 -0.42 -0.86 16 35 H 0.09 -0.21 8.03 -51.93 -0.42 -0.63 16 36 H 0.15 0.40 4.88 -52.48 -0.26 0.15 16 LS Contribution 300.25 15.07 4.52 4.52 Total: 0.00 -9.21 300.25 -10.86 -20.07 By element: Atomic # 1 Polarization: -6.19 SS G_CDS: -4.02 Total: -10.21 kcal Atomic # 6 Polarization: 1.22 SS G_CDS: -4.94 Total: -3.72 kcal Atomic # 7 Polarization: -3.47 SS G_CDS: -0.91 Total: -4.38 kcal Atomic # 8 Polarization: -0.02 SS G_CDS: -0.45 Total: -0.47 kcal Atomic # 14 Polarization: -0.75 SS G_CDS: -5.07 Total: -5.82 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -9.21 -10.86 -20.07 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_15607998_13915762.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.391 kcal (2) G-P(sol) polarization free energy of solvation -9.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.073 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds