Wall clock time and date at job start Mon Mar 8 2021 06:48:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42899 * 1 3 3 Si 1.86297 * 109.46878 * 2 1 4 4 C 1.50700 * 109.47285 * 240.00001 * 2 1 3 5 5 C 1.33328 * 125.95341 * 300.02701 * 4 2 1 6 6 N 1.32114 * 114.58139 * 179.75565 * 5 4 2 7 7 C 1.29696 * 116.86485 * 0.46392 * 6 5 4 8 8 N 1.38606 * 124.94803 * 179.81481 * 7 6 5 9 9 C 1.46498 * 120.00185 * 359.70473 * 8 7 6 10 10 H 1.09000 * 112.84860 * 336.19432 * 9 8 7 11 11 C 1.54046 * 113.69915 * 107.46379 * 9 8 7 12 12 C 1.53777 * 86.98822 * 139.98946 * 11 9 8 13 13 H 1.08999 * 113.61845 * 219.97997 * 12 11 9 14 14 N 1.46499 * 113.61475 * 89.16275 * 12 11 9 15 15 C 1.36887 * 126.39910 * 140.86669 * 14 12 11 16 16 C 1.34672 * 106.81700 * 179.97438 * 15 14 12 17 17 N 1.34127 * 108.01948 * 0.22851 * 16 15 14 18 18 C 1.30502 * 109.25683 * 359.61488 * 17 16 15 19 19 C 1.53775 * 87.17265 * 334.57057 * 12 11 9 20 20 S 1.70965 * 110.09868 * 359.55683 * 7 6 5 21 21 H 0.96700 * 114.00418 * 59.99958 * 1 2 3 22 22 H 1.08997 * 109.46825 * 120.00029 * 2 1 3 23 23 H 1.48496 * 110.00221 * 298.68066 * 3 2 1 24 24 H 1.48497 * 110.00034 * 59.99876 * 3 2 1 25 25 H 1.08000 * 122.70665 * 359.97438 * 5 4 2 26 26 H 0.96996 * 119.99667 * 179.69533 * 8 7 6 27 27 H 1.08997 * 113.61539 * 25.48284 * 11 9 8 28 28 H 1.09008 * 113.69913 * 254.50545 * 11 9 8 29 29 H 1.07997 * 126.58796 * 359.97438 * 15 14 12 30 30 H 1.08002 * 125.98510 * 179.97438 * 16 15 14 31 31 H 1.08003 * 125.64479 * 180.14464 * 18 17 16 32 32 H 1.09008 * 113.61814 * 140.01927 * 19 12 11 33 33 H 1.08993 * 113.61801 * 270.84288 * 19 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9314 -0.7104 -1.2304 5 6 1.6831 -1.9787 -1.5583 6 7 2.2336 -2.3707 -2.6935 7 6 2.9429 -1.4941 -3.3344 8 7 3.5960 -1.7255 -4.5348 9 6 3.5179 -3.0437 -5.1691 10 1 3.2980 -3.8421 -4.4603 11 6 2.6296 -3.0738 -6.4273 12 6 3.6888 -3.9958 -7.0541 13 1 3.8850 -3.7842 -8.1052 14 7 3.4561 -5.4186 -6.7941 15 6 3.6477 -6.4475 -7.6764 16 6 3.3153 -7.5816 -7.0306 17 7 2.9265 -7.2535 -5.7895 18 6 3.0131 -5.9601 -5.6391 19 6 4.7053 -3.3527 -6.0961 20 16 2.9489 -0.0097 -2.4863 21 1 -0.3934 0.4417 -0.7650 22 1 1.7923 -0.5138 0.8900 23 1 1.5878 2.4586 -1.2242 24 1 1.5613 2.4679 1.2084 25 1 1.0779 -2.6317 -0.9471 26 1 4.1047 -1.0145 -4.9550 27 1 2.5431 -2.1073 -6.9239 28 1 1.6657 -3.5585 -6.2717 29 1 3.9980 -6.3655 -8.6947 30 1 3.3513 -8.5797 -7.4415 31 1 2.7671 -5.4131 -4.7409 32 1 5.4163 -4.0625 -5.6731 33 1 5.1864 -2.4632 -6.5027 There are 47 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 47 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_15607998_15704118.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:48:08 Heat of formation + Delta-G solvation = 128.200314 kcal Electronic energy + Delta-G solvation = -18886.003083 eV Core-core repulsion = 15850.011878 eV Total energy + Delta-G solvation = -3035.991204 eV No. of doubly occupied orbitals = 47 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 279.078 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.24575 -40.90596 -39.90658 -38.01707 -35.67993 -32.98570 -31.21630 -30.25698 -27.16192 -26.89285 -26.03430 -24.37434 -22.59862 -22.28249 -21.15551 -20.73178 -19.67564 -18.38600 -17.82974 -17.14978 -16.75626 -16.48326 -16.23554 -15.95059 -15.68233 -15.42825 -15.24661 -14.98237 -14.82367 -14.01601 -13.92133 -13.71202 -13.55877 -13.08764 -12.86319 -12.47686 -12.36886 -12.04293 -11.80192 -11.19971 -10.95218 -10.91839 -10.57765 -10.31352 -10.21081 -9.49432 -8.76136 -5.04331 -0.08064 0.01498 0.65033 1.05525 1.24716 1.54021 1.76075 1.88567 1.94288 2.16157 2.18075 3.11223 3.34816 3.37528 3.59898 3.63565 3.68426 3.86463 3.91675 4.02444 4.27227 4.40384 4.56954 4.58542 4.58805 4.69577 4.74509 4.75618 4.84735 4.90267 5.15707 5.31045 5.77487 5.80548 6.15206 6.23863 6.43208 6.99598 7.10782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.543 6.543 2 C -0.025 4.025 3 Si 0.726 3.274 4 C -0.306 4.306 5 C 0.102 3.898 6 N -0.579 5.579 7 C 0.312 3.688 8 N -0.670 5.670 9 C 0.129 3.871 10 H 0.098 0.902 11 C -0.151 4.151 12 C 0.106 3.894 13 H 0.148 0.852 14 N -0.440 5.440 15 C -0.040 4.040 16 C -0.065 4.065 17 N -0.540 5.540 18 C 0.169 3.831 19 C -0.138 4.138 20 S 0.123 5.877 21 H 0.386 0.614 22 H 0.133 0.867 23 H -0.264 1.264 24 H -0.276 1.276 25 H 0.175 0.825 26 H 0.429 0.571 27 H 0.127 0.873 28 H 0.063 0.937 29 H 0.209 0.791 30 H 0.178 0.822 31 H 0.207 0.793 32 H 0.075 0.925 33 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.332 6.319 -5.123 9.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.351 6.351 2 C -0.137 4.137 3 Si 0.628 3.372 4 C -0.429 4.429 5 C -0.049 4.049 6 N -0.305 5.305 7 C -0.058 4.058 8 N -0.310 5.310 9 C 0.021 3.979 10 H 0.116 0.884 11 C -0.191 4.191 12 C 0.003 3.997 13 H 0.166 0.834 14 N -0.123 5.123 15 C -0.173 4.173 16 C -0.212 4.212 17 N -0.259 5.259 18 C -0.113 4.113 19 C -0.177 4.177 20 S 0.373 5.627 21 H 0.235 0.765 22 H 0.151 0.849 23 H -0.190 1.190 24 H -0.202 1.202 25 H 0.192 0.808 26 H 0.269 0.731 27 H 0.146 0.854 28 H 0.082 0.918 29 H 0.226 0.774 30 H 0.195 0.805 31 H 0.224 0.776 32 H 0.094 0.906 33 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 5.361 6.738 -4.473 9.703 hybrid contribution -1.423 -0.336 -0.469 1.535 sum 3.938 6.402 -4.941 8.995 Atomic orbital electron populations 1.86594 1.18241 1.80273 1.50001 1.24305 0.82995 1.10504 0.95890 0.94411 0.90488 0.73059 0.79209 1.25646 1.13133 0.99019 1.05082 1.21410 0.97811 0.93746 0.91911 1.66456 1.18013 1.34875 1.11138 1.24018 0.95004 0.93910 0.92905 1.44004 1.53976 1.14422 1.18640 1.22863 0.97032 0.84996 0.92977 0.88374 1.24002 0.97709 1.01001 0.96370 1.22383 0.98296 0.76209 1.02841 0.83416 1.45477 1.48038 1.07709 1.11068 1.23249 1.08654 0.86742 0.98630 1.22725 1.06955 1.00175 0.91302 1.70274 1.21792 1.13204 1.20641 1.25181 1.03627 0.89911 0.92549 1.23825 0.96134 1.02622 0.95082 1.83810 1.50502 1.12163 1.16248 0.76460 0.84932 1.18982 1.20222 0.80817 0.73075 0.85449 0.91775 0.77417 0.80492 0.77630 0.90591 0.84316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -1.23 12.87 -148.98 -1.92 -3.15 16 2 C -0.02 0.02 2.99 71.24 0.21 0.23 16 3 Si 0.73 -1.47 31.05 68.60 2.13 0.66 16 4 C -0.31 -0.21 5.74 24.58 0.14 -0.07 16 5 C 0.10 0.39 11.22 83.54 0.94 1.33 16 6 N -0.58 -2.91 9.83 -202.03 -1.99 -4.89 16 7 C 0.31 0.04 8.09 179.32 1.45 1.49 16 8 N -0.67 3.95 5.52 -327.47 -1.81 2.14 16 9 C 0.13 -0.72 3.86 45.61 0.18 -0.54 16 10 H 0.10 -0.02 5.11 -2.39 -0.01 -0.03 16 11 C -0.15 1.09 7.33 31.21 0.23 1.32 16 12 C 0.11 -0.86 4.87 45.51 0.22 -0.64 16 13 H 0.15 -1.94 8.14 -2.39 -0.02 -1.96 16 14 N -0.44 0.13 2.94 -503.82 -1.48 -1.35 16 15 C -0.04 -0.01 11.58 83.09 0.96 0.95 16 16 C -0.06 -0.43 11.87 83.52 0.99 0.56 16 17 N -0.54 -6.46 11.25 -200.31 -2.25 -8.71 16 18 C 0.17 1.00 11.24 180.26 2.03 3.02 16 19 C -0.14 1.36 7.52 31.12 0.23 1.60 16 20 S 0.12 -0.28 20.57 -56.49 -1.16 -1.45 16 21 H 0.39 -1.16 8.70 -74.06 -0.64 -1.81 16 22 H 0.13 -0.33 7.96 -2.39 -0.02 -0.35 16 23 H -0.26 -0.36 7.11 99.48 0.71 0.35 16 24 H -0.28 -1.24 7.11 99.48 0.71 -0.53 16 25 H 0.17 0.50 8.06 -2.91 -0.02 0.47 16 26 H 0.43 -5.02 8.85 -92.71 -0.82 -5.84 16 27 H 0.13 -1.42 8.14 -2.39 -0.02 -1.44 16 28 H 0.06 -0.12 8.06 -2.38 -0.02 -0.14 16 29 H 0.21 -1.55 8.06 -2.91 -0.02 -1.57 16 30 H 0.18 0.54 8.06 -2.91 -0.02 0.52 16 31 H 0.21 0.75 5.80 -2.91 -0.02 0.73 16 32 H 0.08 -0.48 8.14 -2.38 -0.02 -0.50 16 33 H 0.14 -2.18 8.12 -2.39 -0.02 -2.20 16 Total: 0.00 -20.63 295.77 -1.16 -21.79 By element: Atomic # 1 Polarization: -14.02 SS G_CDS: -0.27 Total: -14.29 kcal Atomic # 6 Polarization: 1.67 SS G_CDS: 7.58 Total: 9.25 kcal Atomic # 7 Polarization: -5.29 SS G_CDS: -7.53 Total: -12.82 kcal Atomic # 8 Polarization: -1.23 SS G_CDS: -1.92 Total: -3.15 kcal Atomic # 14 Polarization: -1.47 SS G_CDS: 2.13 Total: 0.66 kcal Atomic # 16 Polarization: -0.28 SS G_CDS: -1.16 Total: -1.45 kcal Total: -20.63 -1.16 -21.79 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_15607998_15704118.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.991 kcal (2) G-P(sol) polarization free energy of solvation -20.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 129.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.790 kcal (6) G-S(sol) free energy of system = (1) + (5) 128.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds