Wall clock time and date at job start Mon Mar 8 2021 06:48:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.33323 * 125.95019 * 2 1 4 4 C 1.50703 * 122.71322 * 0.02562 * 3 2 1 5 5 O 1.42890 * 109.47542 * 113.27552 * 4 3 2 6 6 Si 1.86307 * 109.46777 * 233.27937 * 4 3 2 7 7 N 1.32119 * 114.57876 * 179.74572 * 3 2 1 8 8 C 1.29685 * 116.86617 * 0.25289 * 7 3 2 9 9 N 1.38613 * 124.95303 * 180.02562 * 8 7 3 10 10 C 1.46501 * 120.00128 * 179.97438 * 9 8 7 11 11 H 1.08992 * 112.85105 * 25.33119 * 10 9 8 12 12 C 1.53780 * 113.61073 * 156.53109 * 10 9 8 13 13 C 1.53778 * 87.08168 * 139.97868 * 12 10 9 14 14 H 1.09003 * 113.61671 * 220.01474 * 13 12 10 15 15 N 1.46498 * 113.61664 * 89.19610 * 13 12 10 16 16 C 1.36884 * 126.40002 * 119.71071 * 15 13 12 17 17 C 1.34668 * 106.81900 * 179.84164 * 16 15 13 18 18 N 1.34130 * 108.01975 * 0.42649 * 17 16 15 19 19 C 1.30501 * 109.25608 * 359.73107 * 18 17 16 20 20 C 1.53783 * 113.60952 * 254.13348 * 10 9 8 21 21 S 1.70966 * 110.10007 * 359.97438 * 8 7 3 22 22 H 1.09003 * 109.47051 * 84.91768 * 1 2 3 23 23 H 1.09002 * 109.47559 * 204.91450 * 1 2 3 24 24 H 1.09003 * 109.47842 * 324.92212 * 1 2 3 25 25 H 1.09003 * 109.46562 * 353.27524 * 4 3 2 26 26 H 0.96701 * 114.00536 * 179.97438 * 5 4 3 27 27 H 1.48497 * 109.99758 * 178.67840 * 6 4 3 28 28 H 1.48501 * 109.99824 * 299.99349 * 6 4 3 29 29 H 0.96999 * 119.99581 * 359.97438 * 9 8 7 30 30 H 1.09003 * 113.60994 * 254.52307 * 12 10 9 31 31 H 1.09000 * 113.62185 * 25.42993 * 12 10 9 32 32 H 1.08001 * 126.58665 * 359.97438 * 16 15 13 33 33 H 1.08004 * 125.99146 * 180.11602 * 17 16 15 34 34 H 1.08002 * 125.64592 * 179.97438 * 19 18 17 35 35 H 1.08999 * 113.61861 * 334.56643 * 20 10 9 36 36 H 1.09004 * 113.61258 * 105.47754 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2897 1.0793 0.0000 4 6 1.7414 2.4830 0.0006 5 8 2.0643 3.1201 1.2381 6 14 2.4932 3.4439 -1.4074 7 7 3.5849 0.8188 0.0053 8 6 3.9314 -0.4309 0.0047 9 7 5.2384 -0.8927 0.0103 10 6 5.5064 -2.3329 0.0095 11 1 4.6934 -2.9145 -0.4249 12 6 6.8925 -2.7012 -0.5456 13 6 6.9758 -3.7505 0.5754 14 1 7.9625 -3.8235 1.0328 15 7 6.4249 -5.0551 0.2002 16 6 7.1021 -6.2443 0.1694 17 6 6.2216 -7.1840 -0.2247 18 7 5.0414 -6.5833 -0.4381 19 6 5.1557 -5.3081 -0.1856 20 6 5.9914 -2.8699 1.3665 21 16 2.5412 -1.4260 -0.0025 22 1 -0.3633 0.0910 -1.0236 23 1 -0.3634 -0.9320 0.4329 24 1 -0.3635 0.8410 0.5906 25 1 0.6585 2.4500 -0.1194 26 1 1.7421 4.0291 1.3085 27 1 1.9368 4.8203 -1.4372 28 1 3.9695 3.4961 -1.2555 29 1 5.9754 -0.2621 0.0147 30 1 6.8615 -3.1327 -1.5461 31 1 7.6274 -1.9018 -0.4509 32 1 8.1420 -6.3995 0.4161 33 1 6.4304 -8.2360 -0.3520 34 1 4.3661 -4.5762 -0.2714 35 1 6.4795 -2.1167 1.9850 36 1 5.2341 -3.4374 1.9074 There are 50 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 50 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_15607998_15704122.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:48:10 Heat of formation + Delta-G solvation = 124.380167 kcal Electronic energy + Delta-G solvation = -20824.471484 eV Core-core repulsion = 17632.777007 eV Total energy + Delta-G solvation = -3191.694477 eV No. of doubly occupied orbitals = 50 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.26407 -41.07116 -40.18991 -37.77435 -35.92780 -33.47518 -32.34734 -30.27907 -29.14293 -27.02451 -26.39043 -25.54145 -24.26818 -22.61766 -22.18186 -21.24629 -20.11563 -19.28531 -18.58702 -17.91485 -17.54542 -16.95190 -16.39118 -16.06583 -15.86872 -15.68615 -15.51383 -15.23673 -14.82770 -14.32334 -14.07494 -14.02375 -13.89839 -13.64691 -13.59407 -13.47665 -13.20157 -12.95490 -12.48628 -12.28667 -12.01722 -11.74351 -11.11148 -10.95486 -10.63922 -10.58999 -10.49099 -10.05141 -9.49715 -8.68337 -4.97383 -0.07681 0.12751 0.68127 1.04941 1.23377 1.57793 1.72653 1.74549 1.89324 2.11729 2.18299 3.01736 3.23345 3.40187 3.50294 3.54538 3.64172 3.80172 3.97228 4.02728 4.15061 4.19877 4.30859 4.43933 4.53605 4.58513 4.68959 4.72676 4.78373 4.81004 4.86069 4.92187 5.00130 5.27892 5.29232 5.57757 5.79678 6.22163 6.26351 6.56972 6.93377 7.10222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.245 4.245 3 C 0.090 3.910 4 C -0.045 4.045 5 O -0.553 6.553 6 Si 0.766 3.234 7 N -0.570 5.570 8 C 0.301 3.699 9 N -0.677 5.677 10 C 0.118 3.882 11 H 0.105 0.895 12 C -0.135 4.135 13 C 0.110 3.890 14 H 0.148 0.852 15 N -0.442 5.442 16 C -0.039 4.039 17 C -0.062 4.062 18 N -0.535 5.535 19 C 0.167 3.833 20 C -0.153 4.153 21 S 0.122 5.878 22 H 0.096 0.904 23 H 0.074 0.926 24 H 0.084 0.916 25 H 0.110 0.890 26 H 0.395 0.605 27 H -0.271 1.271 28 H -0.311 1.311 29 H 0.417 0.583 30 H 0.083 0.917 31 H 0.132 0.868 32 H 0.207 0.793 33 H 0.178 0.822 34 H 0.211 0.789 35 H 0.123 0.877 36 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.199 0.535 -0.804 1.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.369 4.369 3 C -0.040 4.040 4 C -0.157 4.157 5 O -0.363 6.363 6 Si 0.670 3.330 7 N -0.296 5.296 8 C -0.070 4.070 9 N -0.317 5.317 10 C 0.012 3.988 11 H 0.122 0.878 12 C -0.174 4.174 13 C 0.006 3.994 14 H 0.165 0.835 15 N -0.125 5.125 16 C -0.172 4.172 17 C -0.209 4.209 18 N -0.253 5.253 19 C -0.115 4.115 20 C -0.193 4.193 21 S 0.371 5.629 22 H 0.114 0.886 23 H 0.093 0.907 24 H 0.103 0.897 25 H 0.128 0.872 26 H 0.246 0.754 27 H -0.197 1.197 28 H -0.239 1.239 29 H 0.256 0.744 30 H 0.102 0.898 31 H 0.150 0.850 32 H 0.223 0.777 33 H 0.195 0.805 34 H 0.228 0.772 35 H 0.141 0.859 36 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 1.553 -0.477 -1.152 1.992 hybrid contribution 0.666 2.087 1.321 2.558 sum 2.219 1.610 0.169 2.747 Atomic orbital electron populations 1.20337 0.84847 1.03801 1.04291 1.25467 1.02460 0.92880 1.16056 1.19101 0.86539 0.95632 1.02723 1.24458 1.03730 0.92300 0.95162 1.86580 1.82041 1.32577 1.35137 0.93993 0.77096 0.78237 0.83627 1.66088 1.18585 1.17667 1.27288 1.23620 0.93076 0.91483 0.98862 1.43978 1.01175 1.06866 1.79716 1.23036 0.98834 0.79097 0.97794 0.87783 1.23777 0.96029 0.98552 0.99078 1.22350 0.99973 0.79396 0.97642 0.83478 1.45456 1.09765 1.08203 1.49030 1.23233 1.00931 0.84349 1.08715 1.22711 0.89539 1.01088 1.07556 1.70278 1.27020 1.06151 1.21900 1.25199 0.87995 0.94664 1.03604 1.24041 0.99036 0.99037 0.97216 1.83736 0.95807 1.09620 1.73748 0.88603 0.90687 0.89735 0.87197 0.75396 1.19744 1.23914 0.74421 0.89813 0.84971 0.77664 0.80499 0.77246 0.85871 0.90316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 0.24 9.71 71.24 0.69 0.93 16 2 C -0.25 -0.76 6.57 24.57 0.16 -0.60 16 3 C 0.09 0.61 5.22 41.40 0.22 0.82 16 4 C -0.05 -0.13 2.83 71.24 0.20 0.07 16 5 O -0.55 -3.21 12.86 -148.98 -1.92 -5.12 16 6 Si 0.77 1.99 32.62 68.60 2.24 4.23 16 7 N -0.57 -5.50 9.77 -189.86 -1.85 -7.35 16 8 C 0.30 1.37 8.24 179.32 1.48 2.85 16 9 N -0.68 1.13 5.52 -327.90 -1.81 -0.68 16 10 C 0.12 -0.72 3.69 45.52 0.17 -0.55 16 11 H 0.10 -0.51 4.61 -2.39 -0.01 -0.52 16 12 C -0.14 1.28 7.54 31.12 0.23 1.52 16 13 C 0.11 -0.96 4.88 45.58 0.22 -0.74 16 14 H 0.15 -1.92 8.14 -2.39 -0.02 -1.94 16 15 N -0.44 1.00 2.94 -503.49 -1.48 -0.48 16 16 C -0.04 0.05 11.58 83.09 0.96 1.01 16 17 C -0.06 -0.28 11.87 83.52 0.99 0.71 16 18 N -0.53 -4.76 11.25 -200.30 -2.25 -7.01 16 19 C 0.17 0.41 11.20 180.26 2.02 2.43 16 20 C -0.15 1.19 7.31 31.18 0.23 1.42 16 21 S 0.12 0.20 21.71 -56.49 -1.23 -1.03 16 22 H 0.10 -0.64 8.14 -2.39 -0.02 -0.66 16 23 H 0.07 -0.30 8.14 -2.39 -0.02 -0.32 16 24 H 0.08 -0.37 7.17 -2.39 -0.02 -0.38 16 25 H 0.11 -0.40 6.34 -2.39 -0.02 -0.41 16 26 H 0.40 -1.36 8.74 -74.06 -0.65 -2.01 16 27 H -0.27 -1.08 7.11 99.48 0.71 -0.37 16 28 H -0.31 -4.13 7.11 99.48 0.71 -3.42 16 29 H 0.42 -1.28 8.84 -92.71 -0.82 -2.09 16 30 H 0.08 -0.59 8.14 -2.39 -0.02 -0.61 16 31 H 0.13 -1.73 8.11 -2.39 -0.02 -1.75 16 32 H 0.21 -1.72 8.06 -2.91 -0.02 -1.74 16 33 H 0.18 0.22 8.06 -2.91 -0.02 0.20 16 34 H 0.21 -0.40 5.86 -2.91 -0.02 -0.41 16 35 H 0.12 -1.16 8.14 -2.39 -0.02 -1.18 16 36 H 0.08 -0.40 8.03 -2.38 -0.02 -0.42 16 Total: 0.00 -24.61 316.05 -1.03 -25.63 By element: Atomic # 1 Polarization: -17.76 SS G_CDS: -0.30 Total: -18.05 kcal Atomic # 6 Polarization: 2.30 SS G_CDS: 7.57 Total: 9.87 kcal Atomic # 7 Polarization: -8.13 SS G_CDS: -7.40 Total: -15.53 kcal Atomic # 8 Polarization: -3.21 SS G_CDS: -1.92 Total: -5.12 kcal Atomic # 14 Polarization: 1.99 SS G_CDS: 2.24 Total: 4.23 kcal Atomic # 16 Polarization: 0.20 SS G_CDS: -1.23 Total: -1.03 kcal Total: -24.61 -1.03 -25.63 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_15607998_15704122.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.015 kcal (2) G-P(sol) polarization free energy of solvation -24.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.635 kcal (6) G-S(sol) free energy of system = (1) + (5) 124.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds