Wall clock time and date at job start Mon Mar 8 2021 06:51:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30841 * 125.95461 * 2 1 4 4 C 1.33241 * 109.82260 * 180.12528 * 3 2 1 5 5 C 1.50695 * 125.52446 * 179.85400 * 4 3 2 6 6 H 1.08999 * 109.47258 * 359.71764 * 5 4 3 7 7 C 1.53008 * 109.47299 * 119.71874 * 5 4 3 8 8 C 1.52994 * 109.47148 * 180.02562 * 7 5 4 9 9 C 1.52999 * 109.47122 * 299.99626 * 8 7 5 10 10 H 1.08993 * 109.47805 * 300.00315 * 9 8 7 11 11 N 1.46502 * 109.46916 * 180.02562 * 9 8 7 12 12 C 1.38608 * 119.99645 * 155.00494 * 11 9 8 13 13 N 1.29687 * 124.95273 * 0.02562 * 12 11 9 14 14 C 1.32124 * 116.86524 * 180.02562 * 13 12 11 15 15 C 1.33330 * 114.58023 * 0.26640 * 14 13 12 16 16 C 1.50700 * 125.94911 * 179.69557 * 15 14 13 17 17 O 1.42904 * 109.46845 * 65.00065 * 16 15 14 18 18 Si 1.86295 * 109.46824 * 185.00054 * 16 15 14 19 19 S 1.70969 * 124.94555 * 180.02562 * 12 11 9 20 20 C 1.53003 * 109.46818 * 60.00690 * 9 8 7 21 21 C 1.52999 * 109.47172 * 239.71624 * 5 4 3 22 22 N 1.30718 * 108.94757 * 359.59066 * 4 3 2 23 23 N 1.34428 * 125.96495 * 179.67553 * 2 1 3 24 24 H 1.09005 * 109.46799 * 270.30152 * 1 2 3 25 25 H 1.09000 * 109.47809 * 30.30186 * 1 2 3 26 26 H 1.09000 * 109.47243 * 150.30853 * 1 2 3 27 27 H 1.08994 * 109.46636 * 59.99906 * 7 5 4 28 28 H 1.09001 * 109.46901 * 300.00558 * 7 5 4 29 29 H 1.09007 * 109.46983 * 180.02562 * 8 7 5 30 30 H 1.08999 * 109.47459 * 59.99858 * 8 7 5 31 31 H 0.97005 * 120.00426 * 334.99768 * 11 9 8 32 32 H 1.08002 * 122.70520 * 179.97438 * 14 13 12 33 33 H 1.08999 * 109.47250 * 304.99785 * 16 15 14 34 34 H 0.96697 * 113.99587 * 179.97438 * 17 16 15 35 35 H 1.48508 * 109.99801 * 178.68371 * 18 16 15 36 36 H 1.48500 * 110.00361 * 300.00054 * 18 16 15 37 37 H 1.08999 * 109.47479 * 59.99942 * 20 9 8 38 38 H 1.09002 * 109.47165 * 180.02562 * 20 9 8 39 39 H 1.08993 * 109.47805 * 300.00100 * 21 5 4 40 40 H 1.09004 * 109.46933 * 60.00650 * 21 5 4 41 41 H 0.96999 * 126.81993 * 359.97438 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2752 1.0591 0.0000 4 6 3.5552 0.6889 -0.0027 5 6 4.7371 1.6238 -0.0068 6 1 4.3845 2.6552 -0.0121 7 6 5.5839 1.3808 1.2442 8 6 6.7835 2.3304 1.2405 9 6 7.6318 2.0754 -0.0070 10 1 7.9848 1.0442 -0.0019 11 7 8.7808 2.9843 -0.0103 12 6 9.9348 2.6399 -0.6965 13 7 10.1016 1.5417 -1.3657 14 6 11.2699 1.3762 -1.9601 15 6 12.1306 2.3783 -1.7800 16 6 13.5301 2.4530 -2.3341 17 8 13.4748 2.5156 -3.7607 18 14 14.3773 3.9768 -1.6778 19 16 11.3459 3.6013 -0.7839 20 6 6.7851 2.3185 -1.2580 21 6 5.5853 1.3682 -1.2542 22 7 3.6194 -0.6167 0.0043 23 7 2.2965 -1.0880 0.0062 24 1 -0.3633 0.0054 1.0277 25 1 -0.3635 0.8872 -0.5185 26 1 -0.3634 -0.8927 -0.5090 27 1 5.9364 0.3495 1.2496 28 1 4.9796 1.5628 2.1330 29 1 7.3870 2.1570 2.1315 30 1 6.4306 3.3617 1.2353 31 1 8.7339 3.8272 0.4677 32 1 11.5099 0.4978 -2.5409 33 1 14.0887 1.5675 -2.0306 34 1 14.3417 2.5660 -4.1860 35 1 15.7690 4.0453 -2.1917 36 1 13.6254 5.1911 -2.0846 37 1 6.4322 3.3498 -1.2631 38 1 7.3893 2.1364 -2.1467 39 1 5.9379 0.3369 -1.2489 40 1 4.9820 1.5415 -2.1454 41 1 2.0094 -2.0145 0.0118 There are 56 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 56 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_15608010_15704118.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:51:42 Heat of formation + Delta-G solvation = 95.015955 kcal Electronic energy + Delta-G solvation = -24138.923004 eV Core-core repulsion = 20569.454050 eV Total energy + Delta-G solvation = -3569.468954 eV No. of doubly occupied orbitals = 56 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 322.120 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.12594 -40.77067 -39.67287 -37.89560 -36.28455 -33.87748 -33.30364 -31.87971 -31.63587 -30.35804 -28.72438 -26.51077 -25.02944 -23.85126 -23.69965 -22.37993 -21.48769 -20.67906 -20.35207 -19.40004 -18.81320 -18.51820 -17.39016 -16.94665 -16.66498 -16.13168 -15.75870 -15.72381 -15.42718 -15.27646 -15.08567 -14.75374 -14.52069 -14.17409 -14.05253 -13.93569 -13.72646 -13.56244 -13.21409 -12.85154 -12.78410 -12.37172 -12.33701 -12.24484 -12.16063 -12.07399 -11.74513 -11.36724 -11.02850 -10.93957 -10.85477 -10.58779 -10.34657 -10.15633 -10.05737 -8.61269 -5.02229 0.06890 0.16674 0.63986 0.79683 1.28725 1.57224 1.67961 1.91843 1.94173 2.14798 2.22763 2.93214 3.40493 3.54718 3.64560 3.70603 3.77230 3.81028 4.02958 4.08617 4.20024 4.25682 4.34390 4.39620 4.44393 4.45581 4.48970 4.52416 4.73233 4.74830 4.81269 4.87543 4.99841 5.05677 5.15119 5.19059 5.24455 5.31639 5.32801 5.44544 5.54354 5.96390 6.08324 6.17388 6.45103 7.14153 7.16616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.283 3.717 3 N -0.540 5.540 4 C 0.236 3.764 5 C 0.006 3.994 6 H 0.099 0.901 7 C -0.104 4.104 8 C -0.125 4.125 9 C 0.160 3.840 10 H 0.093 0.907 11 N -0.689 5.689 12 C 0.328 3.672 13 N -0.549 5.549 14 C 0.120 3.880 15 C -0.262 4.262 16 C -0.018 4.018 17 O -0.535 6.535 18 Si 0.650 3.350 19 S 0.091 5.909 20 C -0.127 4.127 21 C -0.105 4.105 22 N -0.309 5.309 23 N -0.484 5.484 24 H 0.093 0.907 25 H 0.099 0.901 26 H 0.084 0.916 27 H 0.075 0.925 28 H 0.071 0.929 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.413 0.587 32 H 0.174 0.826 33 H 0.084 0.916 34 H 0.380 0.620 35 H -0.242 1.242 36 H -0.239 1.239 37 H 0.066 0.934 38 H 0.073 0.927 39 H 0.074 0.926 40 H 0.068 0.932 41 H 0.441 0.559 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.822 -0.513 3.344 3.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.005 3.995 3 N -0.269 5.269 4 C -0.047 4.047 5 C -0.015 4.015 6 H 0.117 0.883 7 C -0.143 4.143 8 C -0.163 4.163 9 C 0.053 3.947 10 H 0.111 0.889 11 N -0.328 5.328 12 C -0.043 4.043 13 N -0.274 5.274 14 C -0.032 4.032 15 C -0.385 4.385 16 C -0.131 4.131 17 O -0.342 6.342 18 Si 0.549 3.451 19 S 0.340 5.660 20 C -0.166 4.166 21 C -0.144 4.144 22 N -0.138 5.138 23 N -0.202 5.202 24 H 0.112 0.888 25 H 0.118 0.882 26 H 0.103 0.897 27 H 0.093 0.907 28 H 0.090 0.910 29 H 0.094 0.906 30 H 0.091 0.909 31 H 0.250 0.750 32 H 0.191 0.809 33 H 0.101 0.899 34 H 0.228 0.772 35 H -0.166 1.166 36 H -0.163 1.163 37 H 0.085 0.915 38 H 0.092 0.908 39 H 0.093 0.907 40 H 0.086 0.914 41 H 0.286 0.714 Dipole moment (debyes) X Y Z Total from point charges -1.771 0.675 3.652 4.114 hybrid contribution 0.037 -1.470 -1.489 2.093 sum -1.733 -0.796 2.163 2.884 Atomic orbital electron populations 1.20429 0.83499 1.05196 1.04759 1.24450 0.96716 0.82863 0.95480 1.70399 1.01427 1.29548 1.25542 1.24177 0.93069 0.90120 0.97344 1.19639 0.88560 0.96757 0.96565 0.88260 1.21484 0.95471 1.00492 0.96836 1.21809 0.96481 1.00591 0.97466 1.21087 0.84289 0.94626 0.94691 0.88855 1.44168 1.10398 1.23405 1.54831 1.23703 0.92266 0.93144 0.95154 1.66490 1.23721 1.20116 1.17061 1.21302 0.86310 0.99003 0.96541 1.24286 1.02061 0.99031 1.13104 1.23702 0.95568 1.09833 0.84005 1.86627 1.34160 1.96113 1.17332 0.95204 0.80416 0.77665 0.91821 1.83961 1.07604 1.22862 1.51540 1.21946 0.96193 0.99772 0.98700 1.21517 0.95670 1.00693 0.96517 1.77999 0.96533 1.12378 1.26881 1.48033 1.04390 1.10139 1.57653 0.88827 0.88212 0.89736 0.90651 0.91014 0.90587 0.90882 0.74969 0.80910 0.89868 0.77204 1.16562 1.16286 0.91511 0.90792 0.90740 0.91376 0.71377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 0.26 10.51 36.01 0.38 0.64 16 2 C 0.28 0.29 8.24 -155.69 -1.28 -0.99 16 3 N -0.54 -2.02 11.19 -8.16 -0.09 -2.11 16 4 C 0.24 0.79 6.65 -156.85 -1.04 -0.25 16 5 C 0.01 0.01 2.66 -91.77 -0.24 -0.24 16 6 H 0.10 0.06 8.14 -51.93 -0.42 -0.36 16 7 C -0.10 0.02 5.19 -26.73 -0.14 -0.12 16 8 C -0.13 0.21 5.39 -26.73 -0.14 0.07 16 9 C 0.16 -0.02 2.58 -67.93 -0.18 -0.20 16 10 H 0.09 0.17 7.76 -51.93 -0.40 -0.24 16 11 N -0.69 0.11 5.23 -55.78 -0.29 -0.18 16 12 C 0.33 0.72 8.06 -87.68 -0.71 0.01 16 13 N -0.55 -2.16 9.90 -15.21 -0.15 -2.31 16 14 C 0.12 0.38 11.24 -19.14 -0.22 0.17 16 15 C -0.26 -0.62 5.76 -36.02 -0.21 -0.82 16 16 C -0.02 -0.01 2.98 36.01 0.11 0.10 16 17 O -0.53 -0.90 12.86 -35.23 -0.45 -1.36 16 18 Si 0.65 -0.05 31.07 -169.99 -5.28 -5.33 16 19 S 0.09 0.12 20.59 -107.50 -2.21 -2.09 16 20 C -0.13 -0.05 5.51 -26.70 -0.15 -0.20 16 21 C -0.10 -0.10 5.19 -26.70 -0.14 -0.24 16 22 N -0.31 -1.10 12.80 32.42 0.41 -0.68 16 23 N -0.48 -0.39 7.45 32.62 0.24 -0.15 16 24 H 0.09 -0.40 8.14 -51.93 -0.42 -0.82 16 25 H 0.10 -0.31 8.14 -51.93 -0.42 -0.73 16 26 H 0.08 -0.45 8.14 -51.93 -0.42 -0.87 16 27 H 0.07 0.06 8.14 -51.93 -0.42 -0.36 16 28 H 0.07 0.00 8.14 -51.93 -0.42 -0.43 16 29 H 0.08 -0.15 8.14 -51.92 -0.42 -0.57 16 30 H 0.07 -0.19 8.14 -51.93 -0.42 -0.61 16 31 H 0.41 -0.99 8.73 -40.82 -0.36 -1.35 16 32 H 0.17 0.32 8.06 -52.49 -0.42 -0.10 16 33 H 0.08 -0.11 7.96 -51.93 -0.41 -0.53 16 34 H 0.38 -0.96 8.74 45.56 0.40 -0.56 16 35 H -0.24 -0.29 7.11 56.52 0.40 0.11 16 36 H -0.24 -0.72 7.11 56.52 0.40 -0.32 16 37 H 0.07 -0.01 8.14 -51.93 -0.42 -0.43 16 38 H 0.07 0.18 8.14 -51.93 -0.42 -0.25 16 39 H 0.07 0.15 8.14 -51.93 -0.42 -0.27 16 40 H 0.07 0.11 8.14 -51.93 -0.42 -0.31 16 41 H 0.44 -1.15 8.96 -182.34 -1.63 -2.78 16 LS Contribution 353.15 15.07 5.32 5.32 Total: 0.00 -9.21 353.15 -13.56 -22.77 By element: Atomic # 1 Polarization: -4.69 SS G_CDS: -7.10 Total: -11.79 kcal Atomic # 6 Polarization: 1.87 SS G_CDS: -3.96 Total: -2.08 kcal Atomic # 7 Polarization: -5.56 SS G_CDS: 0.12 Total: -5.44 kcal Atomic # 8 Polarization: -0.90 SS G_CDS: -0.45 Total: -1.36 kcal Atomic # 14 Polarization: -0.05 SS G_CDS: -5.28 Total: -5.33 kcal Atomic # 16 Polarization: 0.12 SS G_CDS: -2.21 Total: -2.09 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -9.21 -13.56 -22.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_15608010_15704118.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.784 kcal (2) G-P(sol) polarization free energy of solvation -9.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.768 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds