Wall clock time and date at job start Mon Mar 8 2021 06:51:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30841 * 125.95461 * 2 1 4 4 C 1.33241 * 109.82260 * 180.12528 * 3 2 1 5 5 C 1.50695 * 125.52446 * 179.85400 * 4 3 2 6 6 H 1.08999 * 109.47258 * 359.71764 * 5 4 3 7 7 C 1.53008 * 109.47299 * 119.71874 * 5 4 3 8 8 C 1.52994 * 109.47148 * 180.02562 * 7 5 4 9 9 C 1.52999 * 109.47122 * 299.99626 * 8 7 5 10 10 H 1.08993 * 109.47805 * 300.00315 * 9 8 7 11 11 N 1.46502 * 109.46916 * 180.02562 * 9 8 7 12 12 C 1.38608 * 119.99645 * 155.00494 * 11 9 8 13 13 N 1.29687 * 124.95273 * 0.02562 * 12 11 9 14 14 C 1.32124 * 116.86524 * 180.02562 * 13 12 11 15 15 C 1.33330 * 114.58023 * 0.26640 * 14 13 12 16 16 C 1.50700 * 125.94911 * 179.69557 * 15 14 13 17 17 O 1.42904 * 109.46845 * 65.00065 * 16 15 14 18 18 Si 1.86295 * 109.46824 * 185.00054 * 16 15 14 19 19 S 1.70969 * 124.94555 * 180.02562 * 12 11 9 20 20 C 1.53003 * 109.46818 * 60.00690 * 9 8 7 21 21 C 1.52999 * 109.47172 * 239.71624 * 5 4 3 22 22 N 1.30718 * 108.94757 * 359.59066 * 4 3 2 23 23 N 1.34428 * 125.96495 * 179.67553 * 2 1 3 24 24 H 1.09005 * 109.46799 * 270.30152 * 1 2 3 25 25 H 1.09000 * 109.47809 * 30.30186 * 1 2 3 26 26 H 1.09000 * 109.47243 * 150.30853 * 1 2 3 27 27 H 1.08994 * 109.46636 * 59.99906 * 7 5 4 28 28 H 1.09001 * 109.46901 * 300.00558 * 7 5 4 29 29 H 1.09007 * 109.46983 * 180.02562 * 8 7 5 30 30 H 1.08999 * 109.47459 * 59.99858 * 8 7 5 31 31 H 0.97005 * 120.00426 * 334.99768 * 11 9 8 32 32 H 1.08002 * 122.70520 * 179.97438 * 14 13 12 33 33 H 1.08999 * 109.47250 * 304.99785 * 16 15 14 34 34 H 0.96697 * 113.99587 * 179.97438 * 17 16 15 35 35 H 1.48508 * 109.99801 * 178.68371 * 18 16 15 36 36 H 1.48500 * 110.00361 * 300.00054 * 18 16 15 37 37 H 1.08999 * 109.47479 * 59.99942 * 20 9 8 38 38 H 1.09002 * 109.47165 * 180.02562 * 20 9 8 39 39 H 1.08993 * 109.47805 * 300.00100 * 21 5 4 40 40 H 1.09004 * 109.46933 * 60.00650 * 21 5 4 41 41 H 0.96999 * 126.81993 * 359.97438 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2752 1.0591 0.0000 4 6 3.5552 0.6889 -0.0027 5 6 4.7371 1.6238 -0.0068 6 1 4.3845 2.6552 -0.0121 7 6 5.5839 1.3808 1.2442 8 6 6.7835 2.3304 1.2405 9 6 7.6318 2.0754 -0.0070 10 1 7.9848 1.0442 -0.0019 11 7 8.7808 2.9843 -0.0103 12 6 9.9348 2.6399 -0.6965 13 7 10.1016 1.5417 -1.3657 14 6 11.2699 1.3762 -1.9601 15 6 12.1306 2.3783 -1.7800 16 6 13.5301 2.4530 -2.3341 17 8 13.4748 2.5156 -3.7607 18 14 14.3773 3.9768 -1.6778 19 16 11.3459 3.6013 -0.7839 20 6 6.7851 2.3185 -1.2580 21 6 5.5853 1.3682 -1.2542 22 7 3.6194 -0.6167 0.0043 23 7 2.2965 -1.0880 0.0062 24 1 -0.3633 0.0054 1.0277 25 1 -0.3635 0.8872 -0.5185 26 1 -0.3634 -0.8927 -0.5090 27 1 5.9364 0.3495 1.2496 28 1 4.9796 1.5628 2.1330 29 1 7.3870 2.1570 2.1315 30 1 6.4306 3.3617 1.2353 31 1 8.7339 3.8272 0.4677 32 1 11.5099 0.4978 -2.5409 33 1 14.0887 1.5675 -2.0306 34 1 14.3417 2.5660 -4.1860 35 1 15.7690 4.0453 -2.1917 36 1 13.6254 5.1911 -2.0846 37 1 6.4322 3.3498 -1.2631 38 1 7.3893 2.1364 -2.1467 39 1 5.9379 0.3369 -1.2489 40 1 4.9820 1.5415 -2.1454 41 1 2.0094 -2.0145 0.0118 There are 56 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 56 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_15608010_15704118.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:51:41 Heat of formation + Delta-G solvation = 95.185283 kcal Electronic energy + Delta-G solvation = -24138.915661 eV Core-core repulsion = 20569.454050 eV Total energy + Delta-G solvation = -3569.461611 eV No. of doubly occupied orbitals = 56 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 322.120 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.22841 -40.88744 -39.75029 -37.96173 -36.35835 -33.91913 -33.38087 -31.93132 -31.71215 -30.39245 -28.70216 -26.61706 -25.13092 -23.95505 -23.72855 -22.42424 -21.57477 -20.76400 -20.46841 -19.48830 -18.88043 -18.57283 -17.49060 -16.99861 -16.74491 -16.20802 -15.84717 -15.81688 -15.52366 -15.28537 -15.13397 -14.81433 -14.62635 -14.07174 -14.05310 -13.93040 -13.66489 -13.50568 -13.25253 -12.90335 -12.83069 -12.46345 -12.44625 -12.33782 -12.17332 -12.14195 -11.81236 -11.42578 -11.14537 -11.09153 -10.95390 -10.67031 -10.45186 -10.26659 -10.19031 -8.71030 -5.02747 -0.06376 0.05130 0.55309 0.67252 1.24778 1.53756 1.69654 1.78580 1.89165 1.98488 2.19294 2.93188 3.44127 3.50377 3.61024 3.68162 3.73356 3.81671 3.96926 4.10202 4.19036 4.22618 4.38211 4.39949 4.46126 4.48106 4.62381 4.66105 4.67383 4.74073 4.81845 4.95951 5.02189 5.03943 5.09313 5.12139 5.14010 5.23650 5.28071 5.36692 5.44482 5.86901 6.15842 6.20887 6.59834 7.04528 7.05704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.285 3.715 3 N -0.575 5.575 4 C 0.226 3.774 5 C 0.009 3.991 6 H 0.105 0.895 7 C -0.096 4.096 8 C -0.114 4.114 9 C 0.165 3.835 10 H 0.072 0.928 11 N -0.679 5.679 12 C 0.319 3.681 13 N -0.577 5.577 14 C 0.102 3.898 15 C -0.272 4.272 16 C -0.027 4.027 17 O -0.557 6.557 18 Si 0.718 3.282 19 S 0.111 5.889 20 C -0.118 4.118 21 C -0.095 4.095 22 N -0.340 5.340 23 N -0.480 5.480 24 H 0.108 0.892 25 H 0.099 0.901 26 H 0.109 0.891 27 H 0.061 0.939 28 H 0.073 0.927 29 H 0.085 0.915 30 H 0.091 0.909 31 H 0.425 0.575 32 H 0.178 0.822 33 H 0.106 0.894 34 H 0.396 0.604 35 H -0.256 1.256 36 H -0.283 1.283 37 H 0.078 0.922 38 H 0.052 0.948 39 H 0.058 0.942 40 H 0.059 0.941 41 H 0.454 0.546 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.118 -0.102 4.171 4.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.007 3.993 3 N -0.305 5.305 4 C -0.057 4.057 5 C -0.012 4.012 6 H 0.123 0.877 7 C -0.136 4.136 8 C -0.152 4.152 9 C 0.058 3.942 10 H 0.090 0.910 11 N -0.319 5.319 12 C -0.052 4.052 13 N -0.303 5.303 14 C -0.049 4.049 15 C -0.395 4.395 16 C -0.139 4.139 17 O -0.368 6.368 18 Si 0.621 3.379 19 S 0.360 5.640 20 C -0.157 4.157 21 C -0.134 4.134 22 N -0.169 5.169 23 N -0.199 5.199 24 H 0.126 0.874 25 H 0.118 0.882 26 H 0.127 0.873 27 H 0.080 0.920 28 H 0.092 0.908 29 H 0.104 0.896 30 H 0.110 0.890 31 H 0.265 0.735 32 H 0.195 0.805 33 H 0.124 0.876 34 H 0.247 0.753 35 H -0.180 1.180 36 H -0.209 1.209 37 H 0.097 0.903 38 H 0.071 0.929 39 H 0.077 0.923 40 H 0.077 0.923 41 H 0.302 0.698 Dipole moment (debyes) X Y Z Total from point charges -2.067 1.058 4.491 5.056 hybrid contribution 0.071 -1.612 -1.797 2.415 sum -1.996 -0.553 2.694 3.398 Atomic orbital electron populations 1.20634 0.80505 1.06425 1.06001 1.25202 0.98177 0.82257 0.93673 1.70402 1.01858 1.31065 1.27185 1.24544 0.93677 0.90370 0.97130 1.19681 0.88122 0.96613 0.96796 0.87708 1.21405 0.95754 1.00140 0.96261 1.21738 0.95566 1.01166 0.96779 1.20974 0.84301 0.93654 0.95226 0.90951 1.44178 1.09658 1.23811 1.54259 1.23914 0.93140 0.93048 0.95080 1.66485 1.24429 1.21287 1.18091 1.21457 0.86549 0.99704 0.97141 1.24596 1.02792 0.98987 1.13085 1.23946 0.94843 1.11449 0.83639 1.86578 1.35967 1.96235 1.17971 0.94429 0.78104 0.74658 0.90755 1.83816 1.06908 1.22126 1.51124 1.21843 0.95610 1.00155 0.98107 1.21384 0.95720 0.99917 0.96411 1.77916 0.98255 1.12762 1.28008 1.48000 1.03617 1.10994 1.57330 0.87381 0.88197 0.87254 0.91982 0.90825 0.89616 0.89047 0.73501 0.80519 0.87607 0.75273 1.18030 1.20942 0.90324 0.92931 0.92287 0.92270 0.69808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 0.58 10.51 71.24 0.75 1.33 16 2 C 0.28 0.60 8.24 138.22 1.14 1.74 16 3 N -0.57 -4.70 11.19 -179.72 -2.01 -6.71 16 4 C 0.23 1.77 6.65 138.63 0.92 2.70 16 5 C 0.01 0.03 2.66 -11.54 -0.03 -0.01 16 6 H 0.10 0.17 8.14 -2.39 -0.02 0.15 16 7 C -0.10 -0.01 5.19 30.60 0.16 0.15 16 8 C -0.11 0.43 5.39 30.59 0.16 0.60 16 9 C 0.17 0.06 2.58 44.99 0.12 0.18 16 10 H 0.07 0.38 7.76 -2.39 -0.02 0.36 16 11 N -0.68 0.14 5.23 -330.40 -1.73 -1.59 16 12 C 0.32 1.61 8.06 179.32 1.45 3.05 16 13 N -0.58 -5.33 9.90 -202.02 -2.00 -7.33 16 14 C 0.10 0.77 11.24 83.54 0.94 1.71 16 15 C -0.27 -1.39 5.76 24.58 0.14 -1.25 16 16 C -0.03 -0.03 2.98 71.24 0.21 0.19 16 17 O -0.56 -1.90 12.86 -148.98 -1.92 -3.82 16 18 Si 0.72 -0.26 31.07 68.60 2.13 1.87 16 19 S 0.11 0.32 20.59 -56.49 -1.16 -0.84 16 20 C -0.12 -0.22 5.51 30.61 0.17 -0.06 16 21 C -0.09 -0.34 5.19 30.61 0.16 -0.18 16 22 N -0.34 -2.86 12.80 -51.34 -0.66 -3.52 16 23 N -0.48 -0.99 7.45 -50.70 -0.38 -1.36 16 24 H 0.11 -1.08 8.14 -2.38 -0.02 -1.10 16 25 H 0.10 -0.70 8.14 -2.39 -0.02 -0.72 16 26 H 0.11 -1.36 8.14 -2.39 -0.02 -1.38 16 27 H 0.06 0.19 8.14 -2.39 -0.02 0.17 16 28 H 0.07 0.00 8.14 -2.39 -0.02 -0.02 16 29 H 0.09 -0.43 8.14 -2.38 -0.02 -0.44 16 30 H 0.09 -0.62 8.14 -2.39 -0.02 -0.64 16 31 H 0.43 -2.36 8.73 -92.70 -0.81 -3.17 16 32 H 0.18 0.91 8.06 -2.91 -0.02 0.89 16 33 H 0.11 -0.38 7.96 -2.39 -0.02 -0.40 16 34 H 0.40 -2.10 8.74 -74.06 -0.65 -2.75 16 35 H -0.26 -0.47 7.11 99.48 0.71 0.24 16 36 H -0.28 -1.95 7.11 99.48 0.71 -1.24 16 37 H 0.08 -0.03 8.14 -2.39 -0.02 -0.05 16 38 H 0.05 0.35 8.14 -2.39 -0.02 0.33 16 39 H 0.06 0.39 8.14 -2.39 -0.02 0.38 16 40 H 0.06 0.30 8.14 -2.38 -0.02 0.29 16 41 H 0.45 -2.30 8.96 -213.10 -1.91 -4.21 16 Total: 0.00 -22.81 353.15 -3.69 -26.49 By element: Atomic # 1 Polarization: -11.08 SS G_CDS: -2.25 Total: -13.33 kcal Atomic # 6 Polarization: 3.85 SS G_CDS: 6.28 Total: 10.13 kcal Atomic # 7 Polarization: -13.74 SS G_CDS: -6.77 Total: -20.51 kcal Atomic # 8 Polarization: -1.90 SS G_CDS: -1.92 Total: -3.82 kcal Atomic # 14 Polarization: -0.26 SS G_CDS: 2.13 Total: 1.87 kcal Atomic # 16 Polarization: 0.32 SS G_CDS: -1.16 Total: -0.84 kcal Total: -22.81 -3.69 -26.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_15608010_15704118.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.677 kcal (2) G-P(sol) polarization free energy of solvation -22.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.491 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds