Wall clock time and date at job start Mon Mar 8 2021 06:51:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30836 * 125.96161 * 2 1 4 4 C 1.33235 * 109.82758 * 180.02562 * 3 2 1 5 5 C 1.50701 * 125.52709 * 180.02562 * 4 3 2 6 6 H 1.08999 * 109.47083 * 0.02562 * 5 4 3 7 7 C 1.52997 * 109.47108 * 120.00210 * 5 4 3 8 8 C 1.52997 * 109.47190 * 180.02562 * 7 5 4 9 9 C 1.53001 * 109.47200 * 299.99927 * 8 7 5 10 10 H 1.09005 * 109.47150 * 299.99884 * 9 8 7 11 11 N 1.46496 * 109.47219 * 180.02562 * 9 8 7 12 12 C 1.38610 * 120.00077 * 85.00115 * 11 9 8 13 13 N 1.29692 * 124.95236 * 180.27488 * 12 11 9 14 14 C 1.32113 * 116.86761 * 180.22528 * 13 12 11 15 15 C 1.50702 * 122.71268 * 179.75709 * 14 13 12 16 16 O 1.42900 * 109.46941 * 293.25151 * 15 14 13 17 17 Si 1.86308 * 109.46960 * 53.24789 * 15 14 13 18 18 C 1.33332 * 114.58184 * 359.48683 * 14 13 12 19 19 C 1.50695 * 125.95359 * 180.28866 * 18 14 13 20 20 S 1.70964 * 124.95078 * 359.97399 * 12 11 9 21 21 C 1.53001 * 109.47198 * 59.99658 * 9 8 7 22 22 C 1.52992 * 109.47231 * 300.00603 * 21 9 8 23 23 N 1.30718 * 108.94957 * 0.26891 * 4 3 2 24 24 N 1.34422 * 125.96201 * 180.02562 * 2 1 3 25 25 H 1.08999 * 109.46868 * 89.99198 * 1 2 3 26 26 H 1.08998 * 109.47444 * 209.99612 * 1 2 3 27 27 H 1.09008 * 109.47065 * 329.99982 * 1 2 3 28 28 H 1.09002 * 109.47155 * 300.00149 * 7 5 4 29 29 H 1.08998 * 109.47581 * 60.00291 * 7 5 4 30 30 H 1.09006 * 109.47676 * 180.02562 * 8 7 5 31 31 H 1.09001 * 109.47687 * 59.99897 * 8 7 5 32 32 H 0.97002 * 120.00052 * 264.99815 * 11 9 8 33 33 H 1.08994 * 109.47506 * 173.24738 * 15 14 13 34 34 H 0.96705 * 114.00009 * 59.99810 * 16 15 14 35 35 H 1.48496 * 109.99748 * 179.97438 * 17 15 14 36 36 H 1.48495 * 110.00042 * 301.32394 * 17 15 14 37 37 H 1.08997 * 109.47428 * 84.88466 * 19 18 14 38 38 H 1.09005 * 109.47242 * 204.88428 * 19 18 14 39 39 H 1.09005 * 109.47322 * 324.88233 * 19 18 14 40 40 H 1.08999 * 109.46499 * 60.00190 * 21 9 8 41 41 H 1.08996 * 109.47268 * 179.97438 * 21 9 8 42 42 H 1.08998 * 109.47084 * 179.97438 * 22 21 9 43 43 H 1.09001 * 109.47458 * 299.99569 * 22 21 9 44 44 H 0.97000 * 126.82018 * 359.97182 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2753 1.0590 0.0000 4 6 3.5552 0.6888 -0.0006 5 6 4.7372 1.6236 -0.0002 6 1 4.3848 2.6550 0.0011 7 6 5.5850 1.3733 1.2486 8 6 6.7847 2.3228 1.2493 9 6 7.6320 2.0750 -0.0003 10 1 7.9849 1.0436 -0.0013 11 7 8.7810 2.9837 0.0007 12 6 9.9347 2.6415 0.6887 13 7 11.0032 3.3733 0.7578 14 6 12.0148 2.8883 1.4556 15 6 13.3196 3.6248 1.6178 16 8 13.9815 3.7051 0.3540 17 14 12.9873 5.3437 2.2551 18 6 11.7862 1.6972 2.0094 19 6 12.7552 0.9157 2.8586 20 16 10.1538 1.1965 1.5758 21 6 6.7843 2.3251 -1.2492 22 6 5.5846 1.3757 -1.2498 23 7 3.6194 -0.6168 -0.0067 24 7 2.2964 -1.0880 -0.0005 25 1 -0.3633 0.0001 -1.0277 26 1 -0.3634 -0.8900 0.5137 27 1 -0.3634 0.8901 0.5139 28 1 4.9815 1.5503 2.1389 29 1 5.9375 0.3419 1.2478 30 1 7.3890 2.1443 2.1388 31 1 6.4319 3.3542 1.2504 32 1 8.7346 3.8249 -0.4801 33 1 13.9526 3.0907 2.3263 34 1 13.4748 4.1688 -0.3267 35 1 14.2662 6.0801 2.4200 36 1 12.0991 6.0715 1.3137 37 1 12.6867 1.2537 3.8926 38 1 12.5104 -0.1453 2.8063 39 1 13.7693 1.0731 2.4912 40 1 6.4314 3.3565 -1.2481 41 1 7.3880 2.1490 -2.1394 42 1 4.9804 1.5543 -2.1393 43 1 5.9373 0.3444 -1.2509 44 1 2.0093 -2.0146 -0.0005 There are 59 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 59 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_15608010_15704122.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:51:44 Heat of formation + Delta-G solvation = 87.967147 kcal Electronic energy + Delta-G solvation = -26265.891832 eV Core-core repulsion = 22540.579600 eV Total energy + Delta-G solvation = -3725.312232 eV No. of doubly occupied orbitals = 59 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 336.136 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -43.22305 -41.09294 -40.07551 -37.77918 -36.46292 -34.11712 -33.37228 -32.99144 -31.91722 -30.57431 -28.96252 -28.49725 -25.78793 -24.97410 -24.15943 -23.58792 -22.42402 -21.60716 -20.90999 -20.19100 -19.13340 -18.88564 -18.06578 -17.43188 -16.96340 -16.74292 -16.38695 -15.91391 -15.79660 -15.54419 -15.28509 -15.21351 -14.89999 -14.28809 -14.21101 -14.09142 -13.90186 -13.82471 -13.67547 -13.55409 -13.44066 -13.28760 -12.99722 -12.83664 -12.45502 -12.42831 -12.19215 -12.16556 -11.86106 -11.73147 -11.50490 -11.11003 -11.08192 -10.95513 -10.67953 -10.49512 -10.44154 -10.02718 -8.62148 -4.95849 -0.00771 0.17860 0.55798 0.76338 1.26097 1.68340 1.69981 1.78940 1.79398 1.90765 2.08324 2.92859 3.31409 3.47478 3.57332 3.62335 3.66274 3.79149 4.03099 4.05965 4.12062 4.14038 4.24632 4.28546 4.33455 4.43168 4.51466 4.59696 4.65329 4.66213 4.73853 4.81772 4.89002 4.96150 5.01510 5.01886 5.03014 5.06913 5.10243 5.21523 5.23586 5.30016 5.34072 5.42847 5.66637 6.16239 6.33351 6.35450 6.92594 7.06562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.285 3.715 3 N -0.576 5.576 4 C 0.226 3.774 5 C 0.007 3.993 6 H 0.102 0.898 7 C -0.097 4.097 8 C -0.127 4.127 9 C 0.154 3.846 10 H 0.079 0.921 11 N -0.684 5.684 12 C 0.311 3.689 13 N -0.576 5.576 14 C 0.057 3.943 15 C -0.043 4.043 16 O -0.542 6.542 17 Si 0.776 3.224 18 C -0.251 4.251 19 C -0.074 4.074 20 S 0.119 5.881 21 C -0.114 4.114 22 C -0.097 4.097 23 N -0.337 5.337 24 N -0.479 5.479 25 H 0.106 0.894 26 H 0.109 0.891 27 H 0.099 0.901 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.069 0.931 31 H 0.080 0.920 32 H 0.414 0.586 33 H 0.140 0.860 34 H 0.384 0.616 35 H -0.289 1.289 36 H -0.296 1.296 37 H 0.094 0.906 38 H 0.072 0.928 39 H 0.081 0.919 40 H 0.088 0.912 41 H 0.081 0.919 42 H 0.070 0.930 43 H 0.067 0.933 44 H 0.454 0.546 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.923 -3.630 2.135 8.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.007 3.993 3 N -0.306 5.306 4 C -0.057 4.057 5 C -0.014 4.014 6 H 0.120 0.880 7 C -0.136 4.136 8 C -0.166 4.166 9 C 0.049 3.951 10 H 0.097 0.903 11 N -0.324 5.324 12 C -0.061 4.061 13 N -0.303 5.303 14 C -0.072 4.072 15 C -0.155 4.155 16 O -0.349 6.349 17 Si 0.680 3.320 18 C -0.374 4.374 19 C -0.133 4.133 20 S 0.368 5.632 21 C -0.152 4.152 22 C -0.136 4.136 23 N -0.167 5.167 24 N -0.199 5.199 25 H 0.125 0.875 26 H 0.128 0.872 27 H 0.118 0.882 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.099 0.901 32 H 0.253 0.747 33 H 0.157 0.843 34 H 0.233 0.767 35 H -0.216 1.216 36 H -0.223 1.223 37 H 0.112 0.888 38 H 0.091 0.909 39 H 0.100 0.900 40 H 0.106 0.894 41 H 0.100 0.900 42 H 0.089 0.911 43 H 0.086 0.914 44 H 0.302 0.698 Dipole moment (debyes) X Y Z Total from point charges -6.621 -3.650 2.227 7.881 hybrid contribution 0.249 0.083 -1.576 1.598 sum -6.372 -3.567 0.650 7.331 Atomic orbital electron populations 1.20630 0.80654 1.06434 1.05920 1.25161 0.98128 0.82284 0.93710 1.70401 1.01960 1.31086 1.27153 1.24518 0.93615 0.90377 0.97208 1.19685 0.88223 0.96591 0.96895 0.87954 1.21411 0.95592 1.00128 0.96454 1.21979 0.96014 1.00909 0.97700 1.21227 0.84457 0.92858 0.96532 0.90290 1.44145 1.09497 1.24334 1.54442 1.23504 0.91036 0.94818 0.96738 1.66057 1.00758 1.35789 1.27681 1.20071 0.95656 0.93864 0.97649 1.24838 0.90307 1.10817 0.89523 1.86532 1.47193 1.79646 1.21576 0.93870 0.77796 0.72444 0.87901 1.25467 0.99537 1.00305 1.12076 1.20308 0.95943 0.98601 0.98437 1.83888 1.11492 1.19565 1.48256 1.21686 0.95679 1.01309 0.96506 1.21412 0.95534 1.00155 0.96505 1.77898 0.98183 1.12621 1.27969 1.48003 1.03652 1.10974 1.57264 0.87526 0.87224 0.88231 0.91511 0.91403 0.91276 0.90092 0.74695 0.84255 0.76748 1.21591 1.22312 0.88754 0.90862 0.90005 0.89374 0.90021 0.91081 0.91400 0.69793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 0.67 10.51 71.24 0.75 1.42 16 2 C 0.28 0.14 8.24 138.23 1.14 1.28 16 3 N -0.58 -3.70 11.19 -179.73 -2.01 -5.71 16 4 C 0.23 1.23 6.65 138.63 0.92 2.15 16 5 C 0.01 0.00 2.66 -11.54 -0.03 -0.03 16 6 H 0.10 -0.03 8.14 -2.39 -0.02 -0.05 16 7 C -0.10 0.11 5.19 30.59 0.16 0.26 16 8 C -0.13 0.36 5.51 30.59 0.17 0.53 16 9 C 0.15 -0.43 2.40 44.99 0.11 -0.33 16 10 H 0.08 -0.12 7.25 -2.38 -0.02 -0.14 16 11 N -0.68 -0.01 5.23 -330.40 -1.73 -1.73 16 12 C 0.31 1.45 8.22 179.32 1.47 2.93 16 13 N -0.58 -4.58 9.76 -189.86 -1.85 -6.43 16 14 C 0.06 0.35 5.20 41.41 0.22 0.56 16 15 C -0.04 -0.18 2.84 71.24 0.20 0.02 16 16 O -0.54 -4.24 12.88 -148.98 -1.92 -6.16 16 17 Si 0.78 2.82 32.61 68.60 2.24 5.06 16 18 C -0.25 -0.89 6.57 24.57 0.16 -0.73 16 19 C -0.07 0.14 9.71 71.23 0.69 0.83 16 20 S 0.12 0.30 21.68 -56.49 -1.22 -0.93 16 21 C -0.11 0.54 5.39 30.59 0.16 0.71 16 22 C -0.10 0.19 5.19 30.59 0.16 0.35 16 23 N -0.34 -1.94 12.80 -51.33 -0.66 -2.59 16 24 N -0.48 -0.03 7.45 -50.71 -0.38 -0.41 16 25 H 0.11 -1.15 8.14 -2.39 -0.02 -1.17 16 26 H 0.11 -1.49 8.14 -2.39 -0.02 -1.51 16 27 H 0.10 -0.80 8.14 -2.38 -0.02 -0.82 16 28 H 0.07 0.01 8.14 -2.39 -0.02 0.00 16 29 H 0.07 0.03 8.14 -2.39 -0.02 0.01 16 30 H 0.07 -0.10 8.04 -2.38 -0.02 -0.12 16 31 H 0.08 -0.28 8.14 -2.39 -0.02 -0.30 16 32 H 0.41 -0.54 8.73 -92.71 -0.81 -1.35 16 33 H 0.14 -0.02 6.33 -2.39 -0.02 -0.03 16 34 H 0.38 1.90 8.70 -74.05 -0.64 1.26 16 35 H -0.29 -2.47 7.11 99.48 0.71 -1.76 16 36 H -0.30 -3.26 7.11 99.48 0.71 -2.55 16 37 H 0.09 -0.51 8.14 -2.39 -0.02 -0.52 16 38 H 0.07 -0.21 8.14 -2.38 -0.02 -0.23 16 39 H 0.08 -0.19 7.17 -2.38 -0.02 -0.21 16 40 H 0.09 -0.57 8.14 -2.39 -0.02 -0.59 16 41 H 0.08 -0.40 8.14 -2.39 -0.02 -0.41 16 42 H 0.07 -0.07 8.14 -2.39 -0.02 -0.09 16 43 H 0.07 -0.01 8.14 -2.39 -0.02 -0.03 16 44 H 0.45 -3.13 8.96 -213.10 -1.91 -5.04 16 Total: 0.00 -21.08 373.09 -3.52 -24.60 By element: Atomic # 1 Polarization: -13.39 SS G_CDS: -2.27 Total: -15.66 kcal Atomic # 6 Polarization: 3.67 SS G_CDS: 6.28 Total: 9.95 kcal Atomic # 7 Polarization: -10.26 SS G_CDS: -6.63 Total: -16.88 kcal Atomic # 8 Polarization: -4.24 SS G_CDS: -1.92 Total: -6.16 kcal Atomic # 14 Polarization: 2.82 SS G_CDS: 2.24 Total: 5.06 kcal Atomic # 16 Polarization: 0.30 SS G_CDS: -1.22 Total: -0.93 kcal Total: -21.08 -3.52 -24.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_15608010_15704122.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.570 kcal (2) G-P(sol) polarization free energy of solvation -21.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.603 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds