Wall clock time and date at job start Mon Mar 8 2021 05:23:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52995 * 109.47041 * 2 1 4 4 C 1.53006 * 109.46652 * 240.00460 * 2 1 3 5 5 Si 1.86295 * 109.47381 * 120.00208 * 2 1 3 6 6 C 1.86295 * 109.47376 * 299.99981 * 5 2 1 7 7 C 1.86302 * 109.46949 * 179.97438 * 5 2 1 8 8 O 1.63105 * 109.47057 * 60.00015 * 5 2 1 9 9 C 1.42901 * 114.00118 * 179.97438 * 8 5 2 10 10 C 1.50693 * 109.47353 * 179.97438 * 9 8 5 11 11 C 1.33730 * 122.07423 * 0.02562 * 10 9 8 12 12 S 1.76253 * 108.21520 * 180.02562 * 11 10 9 13 13 C 1.76173 * 89.83964 * 0.02562 * 12 11 10 14 14 C 1.47866 * 125.47248 * 179.97438 * 13 12 11 15 15 C 1.39529 * 120.14458 * 47.18088 * 14 13 12 16 16 C 1.37994 * 119.85415 * 179.72130 * 15 14 13 17 17 C 1.38330 * 120.13993 * 0.55203 * 16 15 14 18 18 C 1.38373 * 120.28907 * 359.72423 * 17 16 15 19 19 C 1.37946 * 120.14572 * 359.97438 * 18 17 16 20 20 C 1.50692 * 120.07278 * 180.02562 * 19 18 17 21 21 O 1.42897 * 109.47494 * 254.78251 * 20 19 18 22 22 Si 1.86305 * 109.47093 * 14.78537 * 20 19 18 23 23 H 1.48500 * 109.47330 * 59.99762 * 22 20 19 24 24 H 1.48503 * 109.47164 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.47131 * 299.99248 * 22 20 19 26 26 N 1.30227 * 109.05452 * 359.97438 * 13 12 11 27 27 H 1.09001 * 109.46858 * 299.99783 * 1 2 3 28 28 H 1.09000 * 109.47043 * 59.99785 * 1 2 3 29 29 H 1.09001 * 109.46767 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47373 * 180.02562 * 3 2 1 31 31 H 1.09001 * 109.47313 * 300.00559 * 3 2 1 32 32 H 1.09001 * 109.47117 * 60.00375 * 3 2 1 33 33 H 1.09001 * 109.47154 * 299.99297 * 4 2 1 34 34 H 1.09001 * 109.47181 * 59.99760 * 4 2 1 35 35 H 1.09002 * 109.46612 * 179.97438 * 4 2 1 36 36 H 1.09001 * 109.47123 * 180.02562 * 6 5 2 37 37 H 1.09001 * 109.47014 * 300.00361 * 6 5 2 38 38 H 1.08997 * 109.47268 * 59.99937 * 6 5 2 39 39 H 1.09001 * 109.47277 * 300.00000 * 7 5 2 40 40 H 1.08995 * 109.46948 * 60.00427 * 7 5 2 41 41 H 1.09001 * 109.47092 * 180.02562 * 7 5 2 42 42 H 1.09001 * 109.46563 * 59.99870 * 9 8 5 43 43 H 1.09000 * 109.47006 * 300.00534 * 9 8 5 44 44 H 1.07995 * 125.89203 * 359.97438 * 11 10 9 45 45 H 1.07992 * 120.06835 * 359.97438 * 15 14 13 46 46 H 1.07997 * 119.92672 * 180.27258 * 16 15 14 47 47 H 1.08002 * 119.85195 * 179.74080 * 17 16 15 48 48 H 1.08004 * 119.92435 * 180.02562 * 18 17 16 49 49 H 1.08999 * 109.46945 * 134.77946 * 20 19 18 50 50 H 0.96703 * 113.99863 * 60.00137 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2494 5 14 2.1511 -0.8782 1.5210 6 6 1.5302 -0.0002 3.0422 7 6 4.0141 -0.8789 1.5205 8 8 1.6075 -2.4160 1.5210 9 6 2.0297 -3.1818 2.6512 10 6 1.4723 -4.5781 2.5485 11 6 0.7068 -4.9634 1.5219 12 16 0.2606 -6.6504 1.7701 13 6 1.1761 -6.6660 3.2751 14 6 1.3185 -7.8260 4.1809 15 6 1.6414 -9.0818 3.6657 16 6 1.7785 -10.1591 4.5171 17 6 1.5853 -9.9984 5.8773 18 6 1.2592 -8.7568 6.3940 19 6 1.1253 -7.6705 5.5544 20 6 0.7708 -6.3190 6.1190 21 8 -0.5959 -6.0234 5.8245 22 14 1.0193 -6.3326 7.9653 23 1 2.4396 -6.6398 8.2714 24 1 0.6705 -5.0006 8.5215 25 1 0.1464 -7.3680 8.5747 26 7 1.7073 -5.4917 3.4618 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9564 -0.8899 32 1 1.6767 1.9563 0.8900 33 1 1.6767 -1.7489 -1.2494 34 1 1.6766 -0.2073 -2.1393 35 1 3.1300 -0.7208 -1.2496 36 1 1.8940 -0.5138 3.9322 37 1 1.8935 1.0275 3.0422 38 1 0.4403 -0.0002 3.0423 39 1 4.3771 -1.3929 0.6305 40 1 4.3778 0.1487 1.5204 41 1 4.3776 -1.3931 2.4102 42 1 1.6656 -2.7119 3.5648 43 1 3.1185 -3.2256 2.6742 44 1 0.4120 -4.3470 0.6855 45 1 1.7878 -9.2095 2.6033 46 1 2.0328 -11.1307 4.1200 47 1 1.6896 -10.8456 6.5390 48 1 1.1101 -8.6379 7.4571 49 1 1.4114 -5.5591 5.6717 50 1 -1.2241 -6.6599 6.1923 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_271570_11651794_12621894.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:23:22 Heat of formation + Delta-G solvation = -58.938687 kcal Electronic energy + Delta-G solvation = -28604.238681 eV Core-core repulsion = 24846.446102 eV Total energy + Delta-G solvation = -3757.792579 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 365.139 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.15349 -40.13066 -37.76679 -37.51442 -36.86214 -33.45647 -32.65699 -30.55411 -29.48990 -29.10149 -27.92449 -27.87766 -27.39793 -27.00571 -25.38530 -23.17557 -22.22597 -20.52561 -20.18769 -19.25187 -18.36392 -17.65055 -17.03665 -16.77718 -16.61148 -16.43202 -16.18611 -15.83332 -15.73952 -15.22091 -14.92460 -14.87126 -14.78546 -14.72829 -14.49011 -14.03796 -14.02035 -13.70487 -13.60438 -13.48844 -13.40405 -13.24441 -13.12133 -12.95195 -12.94731 -12.61418 -12.43461 -12.30902 -12.13076 -12.05437 -11.93900 -11.74353 -11.65514 -11.62874 -11.42865 -10.72026 -10.48995 -10.40792 -10.31450 -10.10081 -10.01541 -9.92898 -9.21619 -0.50936 0.15928 0.22073 0.66094 0.88193 1.17506 1.32977 1.41447 1.53820 1.71487 1.88625 1.93571 2.03926 2.36165 2.62801 3.07966 3.55306 3.68863 3.83699 3.86514 4.01147 4.09438 4.09641 4.22443 4.30753 4.37021 4.39920 4.41872 4.46692 4.58751 4.67791 4.67997 4.72623 4.73479 4.75057 4.77852 4.79621 4.83508 4.93222 4.97812 5.08110 5.08597 5.11511 5.18010 5.28066 5.33135 5.35593 5.38780 5.40294 5.42035 5.47457 5.54298 5.59754 5.79903 6.61014 6.80312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.374 4.374 3 C -0.137 4.137 4 C -0.134 4.134 5 Si 1.293 2.707 6 C -0.512 4.512 7 C -0.512 4.512 8 O -0.626 6.626 9 C 0.164 3.836 10 C 0.055 3.945 11 C -0.209 4.209 12 S 0.089 5.911 13 C 0.123 3.877 14 C -0.002 4.002 15 C -0.093 4.093 16 C -0.112 4.112 17 C -0.097 4.097 18 C -0.129 4.129 19 C -0.077 4.077 20 C -0.091 4.091 21 O -0.532 6.532 22 Si 0.947 3.053 23 H -0.247 1.247 24 H -0.252 1.252 25 H -0.252 1.252 26 N -0.453 5.453 27 H 0.055 0.945 28 H 0.053 0.947 29 H 0.059 0.941 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.059 0.941 34 H 0.053 0.947 35 H 0.054 0.946 36 H 0.068 0.932 37 H 0.074 0.926 38 H 0.073 0.927 39 H 0.072 0.928 40 H 0.075 0.925 41 H 0.068 0.932 42 H 0.077 0.923 43 H 0.076 0.924 44 H 0.188 0.812 45 H 0.130 0.870 46 H 0.133 0.867 47 H 0.131 0.869 48 H 0.129 0.871 49 H 0.134 0.866 50 H 0.372 0.628 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.328 -2.097 0.621 2.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.417 4.417 3 C -0.194 4.194 4 C -0.191 4.191 5 Si 1.425 2.575 6 C -0.614 4.614 7 C -0.614 4.614 8 O -0.585 6.585 9 C 0.085 3.915 10 C -0.077 4.077 11 C -0.348 4.348 12 S 0.347 5.653 13 C -0.153 4.153 14 C -0.006 4.006 15 C -0.113 4.113 16 C -0.130 4.130 17 C -0.116 4.116 18 C -0.147 4.147 19 C -0.080 4.080 20 C -0.201 4.201 21 O -0.336 6.336 22 Si 0.770 3.230 23 H -0.171 1.171 24 H -0.176 1.176 25 H -0.176 1.176 26 N -0.167 5.167 27 H 0.074 0.926 28 H 0.072 0.928 29 H 0.078 0.922 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.072 0.928 35 H 0.073 0.927 36 H 0.087 0.913 37 H 0.093 0.907 38 H 0.092 0.908 39 H 0.092 0.908 40 H 0.094 0.906 41 H 0.087 0.913 42 H 0.095 0.905 43 H 0.094 0.906 44 H 0.205 0.795 45 H 0.148 0.852 46 H 0.151 0.849 47 H 0.149 0.851 48 H 0.147 0.853 49 H 0.152 0.848 50 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 0.254 -2.356 0.872 2.525 hybrid contribution 0.237 0.787 -0.198 0.845 sum 0.491 -1.569 0.674 1.777 Atomic orbital electron populations 1.21515 0.93776 1.01985 1.01846 1.25776 1.00694 1.02657 1.12615 1.21553 1.00799 0.94856 1.02188 1.21515 1.00649 1.00171 0.96772 0.76617 0.62991 0.52852 0.65043 1.27036 1.07110 1.09503 1.17771 1.27038 1.24961 1.04804 1.04602 1.85232 1.79565 1.46173 1.47500 1.20153 0.97832 0.86197 0.87283 1.19814 1.00225 0.96283 0.91360 1.26770 1.05361 0.97068 1.05636 1.85085 1.49965 1.09651 1.20649 1.25425 0.99046 0.94354 0.96446 1.17604 1.02055 0.89968 0.90940 1.21299 0.98340 0.91289 1.00413 1.21144 0.99589 0.98869 0.93389 1.21293 0.97507 0.97173 0.95592 1.21113 1.01036 0.92822 0.99703 1.20355 0.99035 0.96118 0.92501 1.25232 0.86727 0.96321 1.11850 1.86581 1.14183 1.53269 1.79587 0.85763 0.81699 0.81136 0.74420 1.17060 1.17580 1.17572 1.66128 1.22748 0.99610 1.28235 0.92642 0.92788 0.92210 0.92487 0.92485 0.92468 0.92224 0.92791 0.92667 0.91309 0.90656 0.90781 0.90837 0.90636 0.91331 0.90484 0.90583 0.79507 0.85195 0.84911 0.85074 0.85328 0.84811 0.78184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 0.01 7.85 37.16 0.29 0.30 16 2 C -0.37 0.17 0.53 -90.62 -0.05 0.13 16 3 C -0.14 0.09 7.85 37.16 0.29 0.39 16 4 C -0.13 0.02 7.85 37.16 0.29 0.31 16 5 Si 1.29 -1.36 8.45 -169.99 -1.44 -2.80 16 6 C -0.51 0.25 8.50 101.05 0.86 1.11 16 7 C -0.51 0.32 8.50 101.05 0.86 1.18 16 8 O -0.63 -0.25 7.41 -35.23 -0.26 -0.51 16 9 C 0.16 0.15 5.72 36.00 0.21 0.35 16 10 C 0.05 0.16 6.69 -84.40 -0.56 -0.41 16 11 C -0.21 -0.46 10.53 29.15 0.31 -0.15 16 12 S 0.09 0.16 23.38 -107.50 -2.51 -2.35 16 13 C 0.12 0.37 6.36 -14.29 -0.09 0.27 16 14 C 0.00 0.00 5.85 -104.98 -0.61 -0.62 16 15 C -0.09 -0.03 9.75 -39.19 -0.38 -0.41 16 16 C -0.11 0.10 10.03 -39.64 -0.40 -0.30 16 17 C -0.10 0.09 10.04 -39.50 -0.40 -0.31 16 18 C -0.13 0.01 8.65 -39.64 -0.34 -0.33 16 19 C -0.08 -0.10 5.29 -104.23 -0.55 -0.65 16 20 C -0.09 -0.12 2.08 36.00 0.07 -0.04 16 21 O -0.53 -0.85 12.82 -35.23 -0.45 -1.31 16 22 Si 0.95 0.16 25.49 -169.99 -4.33 -4.17 16 23 H -0.25 -0.18 7.11 56.52 0.40 0.22 16 24 H -0.25 -0.40 7.11 56.52 0.40 0.00 16 25 H -0.25 0.13 6.74 56.52 0.38 0.51 16 26 N -0.45 -1.66 8.60 -7.55 -0.06 -1.72 16 27 H 0.05 -0.03 7.79 -51.93 -0.40 -0.43 16 28 H 0.05 0.01 8.14 -51.93 -0.42 -0.41 16 29 H 0.06 0.00 7.96 -51.93 -0.41 -0.41 16 30 H 0.06 -0.07 7.79 -51.93 -0.40 -0.48 16 31 H 0.06 -0.02 8.14 -51.93 -0.42 -0.44 16 32 H 0.06 -0.07 7.79 -51.93 -0.40 -0.48 16 33 H 0.06 -0.01 7.97 -51.93 -0.41 -0.42 16 34 H 0.05 0.01 8.14 -51.93 -0.42 -0.42 16 35 H 0.05 -0.03 7.79 -51.93 -0.40 -0.44 16 36 H 0.07 -0.04 7.48 -51.93 -0.39 -0.43 16 37 H 0.07 -0.06 7.79 -51.93 -0.40 -0.47 16 38 H 0.07 -0.01 7.79 -51.93 -0.40 -0.41 16 39 H 0.07 -0.03 7.79 -51.93 -0.40 -0.43 16 40 H 0.07 -0.07 7.79 -51.93 -0.40 -0.48 16 41 H 0.07 -0.05 7.48 -51.93 -0.39 -0.44 16 42 H 0.08 -0.01 7.21 -51.93 -0.37 -0.38 16 43 H 0.08 -0.03 7.21 -51.93 -0.37 -0.40 16 44 H 0.19 0.17 7.51 -52.49 -0.39 -0.23 16 45 H 0.13 -0.12 8.06 -52.49 -0.42 -0.55 16 46 H 0.13 -0.40 8.06 -52.49 -0.42 -0.82 16 47 H 0.13 -0.41 8.06 -52.49 -0.42 -0.83 16 48 H 0.13 -0.18 4.88 -52.48 -0.26 -0.44 16 49 H 0.13 0.33 6.06 -51.93 -0.31 0.01 16 50 H 0.37 -0.73 8.70 45.56 0.40 -0.33 16 LS Contribution 412.57 15.07 6.22 6.22 Total: 0.00 -5.08 412.57 -10.56 -15.64 By element: Atomic # 1 Polarization: -2.30 SS G_CDS: -7.51 Total: -9.81 kcal Atomic # 6 Polarization: 1.02 SS G_CDS: -0.21 Total: 0.81 kcal Atomic # 7 Polarization: -1.66 SS G_CDS: -0.06 Total: -1.72 kcal Atomic # 8 Polarization: -1.10 SS G_CDS: -0.71 Total: -1.82 kcal Atomic # 14 Polarization: -1.20 SS G_CDS: -5.77 Total: -6.97 kcal Atomic # 16 Polarization: 0.16 SS G_CDS: -2.51 Total: -2.35 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -5.08 -10.56 -15.64 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_11651794_12621894.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.298 kcal (2) G-P(sol) polarization free energy of solvation -5.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds